View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0738_low_83 (Length: 209)

Name: NF0738_low_83
Description: NF0738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0738_low_83
NF0738_low_83
[»] chr3 (1 HSPs)
chr3 (1-95)||(5187214-5187308)
[»] chr7 (2 HSPs)
chr7 (1-77)||(21266987-21267063)
chr7 (1-81)||(48185703-48185782)
[»] chr1 (2 HSPs)
chr1 (40-91)||(25218331-25218382)
chr1 (39-91)||(41313037-41313088)
[»] chr5 (2 HSPs)
chr5 (39-91)||(37803037-37803088)
chr5 (39-91)||(37626497-37626548)
[»] chr2 (2 HSPs)
chr2 (7-56)||(2584194-2584243)
chr2 (39-91)||(19216491-19216542)
[»] scaffold2006 (1 HSPs)
scaffold2006 (39-91)||(840-891)


Alignment Details
Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 5187214 - 5187308
Alignment:
Q  1 aataacaataacataaaactccatgacttcaaaataaaaataaatgagtttctctttgaattttcataatagtaaattagaattgttttacttca 95  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  5187214 aataacaataagataaaactccatgacttcaaaataaaaataaatgagtttctctttgaattttcaaaatagtaaattagaatcgttttacttca 5187308  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 21266987 - 21267063
Alignment:
Q  1 aataacaataacataaaactccatgacttcaaaataaaaataaatgagtttctctttgaattttcataatagtaaat 77  Q
    |||||||||||| ||||||||| || ||||||||||||||||||| | ||||||||  |||||||| || |||||||    
T  21266987 aataacaataacttaaaactccttggcttcaaaataaaaataaataaatttctcttaaaattttcaaaacagtaaat 21267063  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 48185703 - 48185782
Alignment:
Q  1 aataacaataacataaaactccatgacttcaaaataaaaataaatgagtttctctttgaattttcataatagtaaattaga 81  Q
    |||||||||||| ||||||||| || |||||| |||||||||||| | |||||| || |||||||| || |||||||||||    
T  48185703 aataacaataacttaaaactccttggcttcaagataaaaataaataaatttctc-ttaaattttcaaaacagtaaattaga 48185782  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 91
Target Start/End: Complemental strand, 25218382 - 25218331
Alignment:
Q  40 ataaatgagtttctctttgaattttcataatagtaaattagaattgttttac 91  Q
    |||||| |||||||||||||||||||| |||||||||||||| |||| ||||    
T  25218382 ataaataagtttctctttgaattttcaaaatagtaaattagagttgtcttac 25218331  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 91
Target Start/End: Original strand, 41313037 - 41313088
Alignment:
Q  39 aataaatgagtttctctttgaattttcataatagtaaattagaattgttttac 91  Q
    ||||||| |||||||||| ||||||||| |||||||||| ||| |||||||||    
T  41313037 aataaataagtttctctt-gaattttcagaatagtaaatcagagttgttttac 41313088  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 91
Target Start/End: Original strand, 37803037 - 37803088
Alignment:
Q  39 aataaatgagtttctctttgaattttcataatagtaaattagaattgttttac 91  Q
    ||||||| |||||||||| ||||||||| |||||||||||||| |||||||||    
T  37803037 aataaataagtttctctt-gaattttcagaatagtaaattagagttgttttac 37803088  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 91
Target Start/End: Original strand, 37626497 - 37626548
Alignment:
Q  39 aataaatgagtttctctttgaattttcataatagtaaattagaattgttttac 91  Q
    ||||||| |||||||||| ||||||||| |||||||||| ||| |||||||||    
T  37626497 aataaataagtttctctt-gaattttcagaatagtaaatcagagttgttttac 37626548  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 2584194 - 2584243
Alignment:
Q  7 aataacataaaactccatgacttcaaaataaaaataaatgagtttctctt 56  Q
    |||||| ||||||||| || ||||||||||||||||||| | ||||||||    
T  2584194 aataacttaaaactccttgccttcaaaataaaaataaataaatttctctt 2584243  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 91
Target Start/End: Complemental strand, 19216542 - 19216491
Alignment:
Q  39 aataaatgagtttctctttgaattttcataatagtaaattagaattgttttac 91  Q
    ||||||| |||||||||| ||||||||| |||||||||| ||| |||||||||    
T  19216542 aataaataagtttctctt-gaattttcagaatagtaaatcagagttgttttac 19216491  T

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Target: scaffold2006 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold2006
Description:

Target: scaffold2006; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 91
Target Start/End: Original strand, 840 - 891
Alignment:
Q  39 aataaatgagtttctctttgaattttcataatagtaaattagaattgttttac 91  Q
    ||||||| |||||||||| ||||||||| |||||||||| ||| |||||||||    
T  840 aataaataagtttctctt-gaattttcagaatagtaaataagagttgttttac 891  T

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