View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0738_low_9 (Length: 475)
Name: NF0738_low_9
Description: NF0738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0738_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 394; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 30 - 463
Target Start/End: Complemental strand, 1232876 - 1232443
Alignment:
| Q |
30 |
cagggcattttagaagtggaatgagtatcatatttaagttctaaatacacaaaatattaccagcaaaaagttcaagtattctccatttatctacctgcta |
129 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
1232876 |
cagggcattttagaggtggaatgagtatcatatttaagttctaaatacacaaaatattaccagcaaaaagttcaagtattctccatttatctacctacta |
1232777 |
T |
|
| Q |
130 |
actaccctcgattcatgagagatagtgcgagtttaatggaactcaccactaatctctttgtttaaccgagcgtaattgaagatagatcaatggataatac |
229 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
1232776 |
actacccacgattcatgagagatagtgcgagtttaatggaactcaccactaatctctttgtttaaaaaagcgtaattgaagatagatcaatggataatac |
1232677 |
T |
|
| Q |
230 |
tattcataattctatcagtagattagataataccacttatcactctcgacttctttaaactaaaatatctactcagttgttttctaggtttctcgatgtg |
329 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
1232676 |
tattcataattctatcagtagattagataataccacttatcactctctacttcttttaactataatatctactcagttgttttctaggtttctcgatgtg |
1232577 |
T |
|
| Q |
330 |
ggattcatttccaagtcccaacattttcttgtatcctaatgatcctgaattatttccaaacctgaaatttgtaagacataaaagatgaagacaacatact |
429 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
1232576 |
ggattcatttccaagtcccaacattttcttgtatcctaatgatcctgaattatttccaaacctgaaatttgtaagacataaaagatgaagacatcatact |
1232477 |
T |
|
| Q |
430 |
tcaaatctttataatttcaattgtaaggtaccta |
463 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
1232476 |
tcaaatctttataatttcaattgtaaggtaccta |
1232443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 161 - 426
Target Start/End: Complemental strand, 1242227 - 1241964
Alignment:
| Q |
161 |
tttaatggaactcaccactaatctctttgtttaaccgagcgtaattgaagatagatcaatggataatactattcataattctatcagtagattagataat |
260 |
Q |
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| T |
1242227 |
tttaatggaactcatcactaatctctctaattaatcaaatgtaattgaagatagataaacaaataatactattcatagttctatca----att-gataat |
1242133 |
T |
|
| Q |
261 |
accacttatcactctcgacttctttaa-actaaaatatctactcagttgttttctaggtttctcgatgtgggattcatttccaagtcccaacattttctt |
359 |
Q |
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|| ||| ||||||||| |||||||| | ||||| |||||||||||||||||||||||||||| ||||||||| || || |||||||||| || |||||| |
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| T |
1242132 |
actactcatcactctctacttcttttatactaa--tatctactcagttgttttctaggtttctggatgtgggactctttcccaagtcccagcagtttctt |
1242035 |
T |
|
| Q |
360 |
gtatcctaatgatcctga----attatttccaaacctgaaatttgtaagacataaaagatgaagacaacat |
426 |
Q |
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|
| T |
1242034 |
gtatcctaatgatcctgaattaattatttccaaacgttaaatttgtaagacatgaaagatgaaaacaacat |
1241964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 376 - 448
Target Start/End: Complemental strand, 1234199 - 1234128
Alignment:
| Q |
376 |
gaattatttccaaacctgaaatttgtaagacataaaagatgaagacaacatacttcaaatctttataatttca |
448 |
Q |
| |
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||||||||||||||| |||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||| |
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| T |
1234199 |
gaattatttccaaac-tgaaatttataagacatgaaagatgaagacaacatccttcaaatctttataatttca |
1234128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 375 - 455
Target Start/End: Complemental strand, 1242912 - 1242832
Alignment:
| Q |
375 |
tgaattatttccaaacctgaaatttgtaagacataaaagatgaagacaacatacttcaaatctttataatttcaattgtaa |
455 |
Q |
| |
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||||||||||||||| |||||||| ||||| || ||||||||| |||| |||||||||||||||||||||| |||||||| |
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|
| T |
1242912 |
tgaattatttccaaaagtgaaatttataagaaatgaaagatgaaaacaaaatacttcaaatctttataatttgaattgtaa |
1242832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 386 - 457
Target Start/End: Complemental strand, 1251643 - 1251572
Alignment:
| Q |
386 |
caaacctgaaatttgtaagacataaaagatgaagacaacatacttcaaatctttataatttcaattgtaagg |
457 |
Q |
| |
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|||| ||||||||||||||| || ||||||||||| ||||||||| ||||||||||||||| |||||||||| |
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|
| T |
1251643 |
caaaactgaaatttgtaagaaatgaaagatgaagaaaacatacttgaaatctttataatttgaattgtaagg |
1251572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 376 - 408
Target Start/End: Complemental strand, 1244158 - 1244126
Alignment:
| Q |
376 |
gaattatttccaaacctgaaatttgtaagacat |
408 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
1244158 |
gaattatttccaaacctgaaatttgtaagacat |
1244126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 420 - 457
Target Start/End: Complemental strand, 1250011 - 1249974
Alignment:
| Q |
420 |
acaacatacttcaaatctttataatttcaattgtaagg |
457 |
Q |
| |
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|||||||||||||||| ||||||||| ||||||||||| |
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| T |
1250011 |
acaacatacttcaaatatttataattacaattgtaagg |
1249974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 376 - 448
Target Start/End: Complemental strand, 13814253 - 13814182
Alignment:
| Q |
376 |
gaattatttccaaacctgaaatttgtaagacataaaagatgaagacaacatacttcaaatctttataatttca |
448 |
Q |
| |
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|||||||||| |||| |||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |
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| T |
13814253 |
gaattatttcaaaaca-gaaatttgtaagacatgcaagatgtagacaacatacttcaaatctttataatttca |
13814182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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