View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0739_high_12 (Length: 269)
Name: NF0739_high_12
Description: NF0739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0739_high_12 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 47 - 269
Target Start/End: Original strand, 30877218 - 30877440
Alignment:
| Q |
47 |
atttccttctgttatagaaatagttatacataagcatttatatgatatctgactcggatcctttaagcaaagtttcgggctcgatccttgtgtaaaggaa |
146 |
Q |
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| T |
30877218 |
atttccttctgttatagaaatagttatacataagcatttatatgatatctgactcggatcctttaagcaaagtttcgggctcgatccatgtgtaaaggaa |
30877317 |
T |
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| Q |
147 |
aaacttgggttaggaggggagagcccactaaacatcactagttagatttcattgtggatattggttggtggatacttcacaccaatataattggttatta |
246 |
Q |
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| T |
30877318 |
aaacttgggttaggaggggagagcccactaaacatcactagttagctttcattgtggatattggttggtggatacttcacaccaatataattggttatta |
30877417 |
T |
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| Q |
247 |
aaaaataattaagcattaatgtg |
269 |
Q |
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| T |
30877418 |
aaaaataattaagcattaatgtg |
30877440 |
T |
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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 93
Target Start/End: Complemental strand, 29269863 - 29269821
Alignment:
| Q |
52 |
cttctgttatagaaatagtt-atacataagcatttatatgata |
93 |
Q |
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| T |
29269863 |
cttctgttatagaaatagtttatacacaagcatttatatgata |
29269821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 53 - 93
Target Start/End: Complemental strand, 37053560 - 37053519
Alignment:
| Q |
53 |
ttctgttatagaaatagt-tatacataagcatttatatgata |
93 |
Q |
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| T |
37053560 |
ttctgttatagaaatagtctatacataagcacttatatgata |
37053519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 91
Target Start/End: Original strand, 37063181 - 37063217
Alignment:
| Q |
56 |
tgttatagaaatagtt-atacataagcatttatatga |
91 |
Q |
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| T |
37063181 |
tgttatagaaatagtttatacataagcatttatatga |
37063217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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