View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0739_high_15 (Length: 262)
Name: NF0739_high_15
Description: NF0739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0739_high_15 |
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| [»] scaffold0391 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 24142648 - 24142407
Alignment:
| Q |
1 |
cagtggcgtgtcaacttaatgtgaataacggaaaaaagctactgctatacaagaactaaatttggataggatgcaagagtgatggttcaaaaatgccatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24142648 |
cagtggcgtgtcaacttaatgtgaataacggaaaaaagctactgctatacaagaactaaatttggataggatgcaagagtgatggttcaaaaatgccatg |
24142549 |
T |
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| Q |
101 |
tgagccggtggacttcagtggctacagtcagttatcctatcctttaccacgattttttatctacttttgttgggagatggaacgaggaagcgtctaactt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
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| T |
24142548 |
tgagccggtggacttcagtggctacagtcagttatcctatcctttaccacgattttttatctacttttgttgggagatggaacgaggaggtgtctaactt |
24142449 |
T |
|
| Q |
201 |
caatcttccaattagggagatgacaataacacttgatgatgt |
242 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
24142448 |
caatcttccaattagggagatgacaataacacttgatgatgt |
24142407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 44 - 124
Target Start/End: Original strand, 20625647 - 20625727
Alignment:
| Q |
44 |
gctatacaagaactaaatttggataggatgcaagagtgatggttcaaaaatgccatgtgagccggtggacttcagtggcta |
124 |
Q |
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| T |
20625647 |
gctatacaagaaccagatgtggataggatgcaagagcgatggttcaaagaggccatgtgatccaatggacttcagtggcta |
20625727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 100
Target Start/End: Original strand, 16363037 - 16363079
Alignment:
| Q |
58 |
aaatttggataggatgcaagagtgatggttcaaaaatgccatg |
100 |
Q |
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| T |
16363037 |
aaatttggatagcatgcaagaatgatggttcaaagatgccatg |
16363079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0391 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0391
Description:
Target: scaffold0391; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 20 - 126
Target Start/End: Complemental strand, 711 - 604
Alignment:
| Q |
20 |
tgtgaataacggaaaaaagctactg-ctatacaagaactaaatttggataggatgcaagagtgatggttcaaaaatgccatgtgagccggtggacttcag |
118 |
Q |
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|||||| ||||| |||||||||||| |||||||||||| | |||||||||||||||||||| |||| ||||| ||| |||| ||| |||||||||| |
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| T |
711 |
tgtgaacaacggcaaaaagctactggctatacaagaaccacatttggataggatgcaagagcaatgggtcaaagatgtcatgcgagtaagtggacttcaa |
612 |
T |
|
| Q |
119 |
tggctaca |
126 |
Q |
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|||||||| |
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| T |
611 |
tggctaca |
604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 100
Target Start/End: Original strand, 1771900 - 1771956
Alignment:
| Q |
44 |
gctatacaagaactaaatttggataggatgcaagagtgatggttcaaaaatgccatg |
100 |
Q |
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||||||||||| |||||||||||||||||||||| |||| |||||| |||||||| |
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| T |
1771900 |
gctatacaagagtcaaatttggataggatgcaagagcgatgattcaaagatgccatg |
1771956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 62 - 105
Target Start/End: Original strand, 42229583 - 42229626
Alignment:
| Q |
62 |
ttggataggatgcaagagtgatggttcaaaaatgccatgtgagc |
105 |
Q |
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| T |
42229583 |
ttggataggatgcaagagtgatggttcaaagataccacgtgagc |
42229626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 242
Target Start/End: Original strand, 21118225 - 21118303
Alignment:
| Q |
164 |
cttttgttgggagatggaacgaggaagcgtctaacttcaatcttccaattagggagatgacaataacacttgatgatgt |
242 |
Q |
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||||||||| |||||||||||||| |||||| |||| || || | |||| |||||| ||||| |||||||||||||| |
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| T |
21118225 |
cttttgttgaaagatggaacgaggagacgtctagcttccatttttcgattaaggagataacaatgacacttgatgatgt |
21118303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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