View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0739_high_17 (Length: 258)

Name: NF0739_high_17
Description: NF0739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0739_high_17
NF0739_high_17
[»] chr8 (9 HSPs)
chr8 (62-221)||(2916131-2916293)
chr8 (63-238)||(3002274-3002452)
chr8 (62-221)||(2711286-2711448)
chr8 (64-221)||(3170270-3170430)
chr8 (101-228)||(2911166-2911296)
chr8 (82-158)||(3282564-3282640)
chr8 (63-120)||(2989289-2989346)
chr8 (64-128)||(9851196-9851260)
chr8 (83-140)||(3142250-3142307)
[»] chr1 (1 HSPs)
chr1 (62-204)||(10755677-10755822)
[»] chr6 (1 HSPs)
chr6 (63-221)||(18355689-18355850)
[»] chr7 (1 HSPs)
chr7 (92-165)||(3919211-3919284)


Alignment Details
Target: chr8 (Bit Score: 137; Significance: 1e-71; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 62 - 221
Target Start/End: Complemental strand, 2916293 - 2916131
Alignment:
Q  62 gatgtaaggagagaaacttgctcttttgtattagaatcagatatcattggtagagaagataataaaaaagagattgtaaatttattgaggcaaccacata 161  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2916293 gatgtaaggagagaaacttgctcttttgtattagaatcagatatcattggtagagaagataataaaaaagagattgtaaatttattgaggcaaccacata 2916194  T
Q  162 gaa---acaatgtctccttgattgccattgttggtattggcggttttggttagaaagctcttg 221  Q
    |||   |||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||    
T  2916193 gaaaccacaatgtctccttgattgccattgttggtattggcggtttaggtaagacagctcttg 2916131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 63 - 238
Target Start/End: Original strand, 3002274 - 3002452
Alignment:
Q  63 atgtaaggagagaaacttgctcttttgtattagaatcagatatcattggtagagaagataataaaaaagagattgtaaatttattgaggcaaccacatag 162  Q
    ||||| |||| |||||| | ||||| || |||||||| ||||||||||| ||||||||  ||||||| |||||| || |  | ||||| ||||||||| |    
T  3002274 atgtagggagggaaactagttctttggtgttagaatcggatatcattggaagagaagacgataaaaaggagattatacaccttttgagacaaccacatgg 3002373  T
Q  163 aaac---aatgtctccttgattgccattgttggtattggcggttttggttagaaagctcttgttcagtttttatataat 238  Q
    ||||   ||||||||||||||||| |||||||| ||||| ||||| ||  ||| | |||||| ||||||  ||||||||    
T  3002374 aaaccaaaatgtctccttgattgctattgttgggattggtggtttaggaaagacaactcttgctcagttggtatataat 3002452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 62 - 221
Target Start/End: Complemental strand, 2711448 - 2711286
Alignment:
Q  62 gatgtaaggagagaaacttgctcttttgtattagaatcagatatcattggtagagaagataataaaaaagagattgtaaatttattgaggcaaccacata 161  Q
    ||||||||||| |||| | | |||||||| ||||||||||| || ||||| ||||||||| |||||||  ||||| |||  || ||||||||| |||||     
T  2711448 gatgtaaggagggaaagtagttcttttgtgttagaatcagagattattggaagagaagatgataaaaagaagattataagcttgttgaggcaatcacatg 2711349  T
Q  162 gaa---acaatgtctccttgattgccattgttggtattggcggttttggttagaaagctcttg 221  Q
     ||   | |||||||||||| |||| |||||||||||||| ||||| ||  ||| ||||||||    
T  2711348 aaaatcagaatgtctccttggttgctattgttggtattggtggtttgggaaagacagctcttg 2711286  T

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Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 64 - 221
Target Start/End: Complemental strand, 3170430 - 3170270
Alignment:
Q  64 tgtaaggagagaaacttgctcttttgtattagaatcagatatcattggtagagaagataataaaaaagagattgtaaatttattgaggcaaccacataga 163  Q
    ||||||||| |||||  | |||||||| ||||||||||| |||||||| ||||||||| |||||||  ||||  |||  || ||||||||| |||||  |    
T  3170430 tgtaaggagggaaacaagttcttttgtgttagaatcagagatcattggaagagaagatgataaaaagaagatcataagcttgttgaggcaatcacatgaa 3170331  T
Q  164 a---acaatgtctccttgattgccattgttggtattggcggttttggttagaaagctcttg 221  Q
    |   | |||||||||||| |||| |||||||||||||| ||||| ||  ||| ||||||||    
T  3170330 aatcagaatgtctccttggttgctattgttggtattggtggtttgggaaagacagctcttg 3170270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 101 - 228
Target Start/End: Complemental strand, 2911296 - 2911166
Alignment:
Q  101 gatatcattggtagagaagataataaaaaagagattgtaaatttattgaggcaaccacataga---aacaatgtctccttgattgccattgttggtattg 197  Q
    |||||||| || |||||| |||| |||||||||||| ||| |||||||||||| |  ||||||    |||| ||||||||||| || |||||||||||||    
T  2911296 gatatcatcggaagagaaaataacaaaaaagagattataagtttattgaggcagcatcatagagaccacaacgtctccttgatagctattgttggtattg 2911197  T
Q  198 gcggttttggttagaaagctcttgttcagtt 228  Q
    | ||||| ||  ||| |||||||| ||||||    
T  2911196 gtggtttaggcaagacagctcttgctcagtt 2911166  T

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Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 82 - 158
Target Start/End: Complemental strand, 3282640 - 3282564
Alignment:
Q  82 ctcttttgtattagaatcagatatcattggtagagaagataataaaaaagagattgtaaatttattgaggcaaccac 158  Q
    ||||||| | ||||||||| |||||| ||| ||||||||| ||||||| |||||| ||||| | |||||||||||||    
T  3282640 ctcttttttgttagaatcaaatatcaatggaagagaagatgataaaaaggagattataaatctcttgaggcaaccac 3282564  T

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Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 63 - 120
Target Start/End: Original strand, 2989289 - 2989346
Alignment:
Q  63 atgtaaggagagaaacttgctcttttgtattagaatcagatatcattggtagagaaga 120  Q
    |||||||||| ||||||||||||| ||| |||||||| || |||||||| ||||||||    
T  2989289 atgtaaggagggaaacttgctcttatgtgttagaatctgagatcattggaagagaaga 2989346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 128
Target Start/End: Complemental strand, 9851260 - 9851196
Alignment:
Q  64 tgtaaggagagaaacttgctcttttgtattagaatcagatatcattggtagagaagataataaaa 128  Q
    |||||||||||| ||| | |||||||| || ||||| ||||||||||| ||||||||| ||||||    
T  9851260 tgtaaggagagagactagttcttttgtgttggaatcggatatcattggaagagaagatgataaaa 9851196  T

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Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 83 - 140
Target Start/End: Complemental strand, 3142307 - 3142250
Alignment:
Q  83 tcttttgtattagaatcagatatcattggtagagaagataataaaaaagagattgtaa 140  Q
    |||||||| ||||| |||||||||||||| ||||| ||| ||||||| || |||||||    
T  3142307 tcttttgtgttagagtcagatatcattggaagagatgatgataaaaatgacattgtaa 3142250  T

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Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 62 - 204
Target Start/End: Complemental strand, 10755822 - 10755677
Alignment:
Q  62 gatgtaaggagagaaacttgctcttttgtattagaatcagatatcattggtagagaagataataaaaaagagattgtaaatttattgaggcaaccacata 161  Q
    ||||||||||| |||||| | |||||||| ||||||||| |||||||||| |||||| || |||||||  | ||| ||| ||| |||| |||| |||||     
T  10755822 gatgtaaggagggaaactagttcttttgtgttagaatcaaatatcattggaagagaatatgataaaaagaaaattataagtttgttgatgcaatcacatg 10755723  T
Q  162 gaa---acaatgtctccttgattgccattgttggtattggcggttt 204  Q
     ||   | |||||||||||| |||| |||||||||||||| |||||    
T  10755722 aaaatcagaatgtctccttggttgctattgttggtattggtggttt 10755677  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 63 - 221
Target Start/End: Original strand, 18355689 - 18355850
Alignment:
Q  63 atgtaaggagagaaacttgctcttttgtattagaatcagatatcattggtagagaagataataaaaaagagattgtaaatttattgaggcaaccacatag 162  Q
    |||||||||| ||||||||||||| ||| |||||||| || |||||||| ||||||||  |||||||  ||||| |||  || ||||||||| ||||| |    
T  18355689 atgtaaggagggaaacttgctcttatgtgttagaatctgagatcattggaagagaagaagataaaaacaagattataagcttgttgaggcaatcacat-g 18355787  T
Q  163 aa----acaatgtctccttgattgccattgttggtattggcggttttggttagaaagctcttg 221  Q
    ||    | |||||||| ||| |||| |||||||||||||| ||||| ||  ||| ||||||||    
T  18355788 aacatcagaatgtctcattggttgctattgttggtattggtggtttgggaaagacagctcttg 18355850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 92 - 165
Target Start/End: Complemental strand, 3919284 - 3919211
Alignment:
Q  92 ttagaatcagatatcattggtagagaagataataaaaaagagattgtaaatttattgaggcaaccacatagaaa 165  Q
    |||||||| ||||||||||| ||||||||| |||||||  ||||| |||  || |||| |||||||||| ||||    
T  3919284 ttagaatcggatatcattggaagagaagatgataaaaagaagattataagcttgttgatgcaaccacatggaaa 3919211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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