View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0739_high_18 (Length: 254)
Name: NF0739_high_18
Description: NF0739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0739_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 30 - 241
Target Start/End: Original strand, 41789307 - 41789519
Alignment:
| Q |
30 |
ttggagccattgttaatgttcatgagagtttgtgcggtttgatttggtcgttttacgtagttgtttgggtgttgttggtagctctttgtgggtgatctat |
129 |
Q |
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| T |
41789307 |
ttggagccattgttaatgttcatgagagtttgtgcggtttgatttggtcgttttacgtagttgtttgggtgttgttggtagctctttgtgggtgatctat |
41789406 |
T |
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| Q |
130 |
atggatttta-ttgcgagtttttatactcgaactttgctttgtttgaatctctctttttggatgttccgtatatgtatgacattgttgattagtaaatct |
228 |
Q |
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| T |
41789407 |
atggattttatttgcgagtttttatactcgaactttgctttgtctaaatctctctttttggatgttccgtatatgtatgacattgttgattagtaaatct |
41789506 |
T |
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| Q |
229 |
ttttcacttgtct |
241 |
Q |
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| T |
41789507 |
ttttcacttgtct |
41789519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 35 - 118
Target Start/End: Original strand, 32737597 - 32737679
Alignment:
| Q |
35 |
gccattgttaatgttcatgagagtttgtgcggtttgatttggtcgttttacgtagttgtttgggtgttgttggtagctctttgt |
118 |
Q |
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| T |
32737597 |
gccattgttaatgttcatgagagtatgtgcgg-ttggtttggttgttttgtgcaattgtttgggtgttgttggtagctctttgt |
32737679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 35 - 196
Target Start/End: Complemental strand, 5824216 - 5824052
Alignment:
| Q |
35 |
gccattgttaatgttcatgagagtttgtgcggtttgatttggtcgttttacgtagttgtttgggtgttgttggtagctctttgt--gggtgatctatat- |
131 |
Q |
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| T |
5824216 |
gccattgttaatgttcatgagagtttgtgcggtttggtttggttgttttgcgtaattgtttgggtgttgttggtagctctttgtgggggtgatcaatata |
5824117 |
T |
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| Q |
132 |
ggattttattgcgagtttttatactcgaactttgctttgtttgaatctctctttttggatgttcc |
196 |
Q |
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| |||| ||||||| |||| ||| |||||||||||||| || |||||||||||| | |||||| |
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| T |
5824116 |
gcttttttttgcgaggttttttacatgaactttgctttgtctgtatctctctttttaggtgttcc |
5824052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 38 - 121
Target Start/End: Complemental strand, 24374858 - 24374777
Alignment:
| Q |
38 |
attgttaatgttcatgagagtttgtgcggtttgatttggtcgttttacgtagttgtttgggtgttgttggtagctctttgtggg |
121 |
Q |
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| T |
24374858 |
attgttaatgttcatgaaagtttgtttggtttgatttggt-gttttgtgtaattgttt-ggtgttgttggtagatctttgtggg |
24374777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 38 - 101
Target Start/End: Complemental strand, 29176958 - 29176895
Alignment:
| Q |
38 |
attgttaatgttcatgagagtttgtgcggtttgatttggtcgttttacgtagttgtttgggtgt |
101 |
Q |
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||||||||| |||| ||||||||||||| |||| |||||| ||||| ||| |||||||||||| |
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| T |
29176958 |
attgttaatcttcacgagagtttgtgcgatttggtttggttgttttgtgtaattgtttgggtgt |
29176895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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