View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0739_high_19 (Length: 253)

Name: NF0739_high_19
Description: NF0739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0739_high_19
NF0739_high_19
[»] chr3 (8 HSPs)
chr3 (4-114)||(13866282-13866392)
chr3 (4-114)||(44317284-44317394)
chr3 (4-114)||(49528420-49528530)
chr3 (163-229)||(49528305-49528371)
chr3 (163-229)||(44317443-44317509)
chr3 (191-229)||(13866176-13866214)
chr3 (50-84)||(12991638-12991672)
chr3 (163-199)||(50394147-50394183)
[»] chr7 (4 HSPs)
chr7 (4-114)||(4155871-4155981)
chr7 (163-229)||(4155754-4155820)
chr7 (163-209)||(40262832-40262878)
chr7 (163-226)||(38676865-38676929)
[»] chr6 (4 HSPs)
chr6 (4-114)||(6229000-6229110)
chr6 (4-114)||(17244926-17245036)
chr6 (163-229)||(6228885-6228951)
chr6 (191-229)||(17244820-17244858)
[»] chr5 (3 HSPs)
chr5 (4-114)||(19184868-19184978)
chr5 (163-229)||(19184753-19184819)
chr5 (163-209)||(2596595-2596641)
[»] chr2 (2 HSPs)
chr2 (4-114)||(23991538-23991648)
chr2 (163-229)||(23991422-23991488)
[»] chr8 (1 HSPs)
chr8 (163-225)||(15741420-15741483)
[»] chr1 (2 HSPs)
chr1 (163-209)||(38961260-38961306)
chr1 (163-226)||(43727472-43727536)


Alignment Details
Target: chr3 (Bit Score: 103; Significance: 2e-51; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 4 - 114
Target Start/End: Complemental strand, 13866392 - 13866282
Alignment:
Q  4 agttttaaagagatatggttctggaatttgtatggaaagagatatagttttggaatttgtatggaaaagatattgggaagaagatgggttaggttataca 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||    
T  13866392 agttttaaagagatatggttctggaatttgtatggaaagagatatagttttggaatttgtatggaaaggatattgggaagaagatgagttaggttataca 13866293  T
Q  104 tagaaacatga 114  Q
    |||||||||||    
T  13866292 tagaaacatga 13866282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 4 - 114
Target Start/End: Original strand, 44317284 - 44317394
Alignment:
Q  4 agttttaaagagatatggttctggaatttgtatggaaagagatatagttttggaatttgtatggaaaagatattgggaagaagatgggttaggttataca 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||||    
T  44317284 agttttaaagagatatggttctggaatttgtatggaaagagatatggttttggaatttgtatggaaaggatattgggaagaagatgagttaggttataca 44317383  T
Q  104 tagaaacatga 114  Q
    |||||||||||    
T  44317384 tagaaacatga 44317394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 4 - 114
Target Start/End: Complemental strand, 49528530 - 49528420
Alignment:
Q  4 agttttaaagagatatggttctggaatttgtatggaaagagatatagttttggaatttgtatggaaaagatattgggaagaagatgggttaggttataca 103  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||    
T  49528530 agttttaaagagatatggttctggaatttgtattgaaagagatatagttttggaatttgtatggaaaggatattgggaagaagatgagttaggttataca 49528431  T
Q  104 tagaaacatga 114  Q
    |||||||||||    
T  49528430 tagaaacatga 49528420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 163 - 229
Target Start/End: Complemental strand, 49528371 - 49528305
Alignment:
Q  163 atgaagttctgggttcgtgcatgaattttatgagtttttgggtttttccttgctgttgttgatgatg 229  Q
    ||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||    
T  49528371 atgaagttctgggtttgtgtatgaattttatgaatttttgggtttttccttgctgttgttgatgatg 49528305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 163 - 229
Target Start/End: Original strand, 44317443 - 44317509
Alignment:
Q  163 atgaagttctgggttcgtgcatgaattttatgagtttttgggtttttccttgctgttgttgatgatg 229  Q
    |||||||||| |||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||    
T  44317443 atgaagttctaggtttgtgtatgaattttatgaatttttgggtttttccttgctgttgttgatgatg 44317509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 191 - 229
Target Start/End: Complemental strand, 13866214 - 13866176
Alignment:
Q  191 tatgagtttttgggtttttccttgctgttgttgatgatg 229  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  13866214 tatgaatttttgggtttttccttgctgttgttgatgatg 13866176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 84
Target Start/End: Complemental strand, 12991672 - 12991638
Alignment:
Q  50 gttttggaatttgtatggaaaagatattgggaaga 84  Q
    ||||||||||||||||||||||||||||| |||||    
T  12991672 gttttggaatttgtatggaaaagatattgcgaaga 12991638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 199
Target Start/End: Original strand, 50394147 - 50394183
Alignment:
Q  163 atgaagttctgggttcgtgcatgaattttatgagttt 199  Q
    ||||||||||||||| ||| |||||||||||||||||    
T  50394147 atgaagttctgggtttgtgaatgaattttatgagttt 50394183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 99; Significance: 6e-49; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 4 - 114
Target Start/End: Complemental strand, 4155981 - 4155871
Alignment:
Q  4 agttttaaagagatatggttctggaatttgtatggaaagagatatagttttggaatttgtatggaaaagatattgggaagaagatgggttaggttataca 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||    
T  4155981 agttttaaagagatatggttctggaatttgtatggaaagagatatagttttggaatttgtatggaaaggatattgggaagaagatgagttaggttataca 4155882  T
Q  104 tagaaacatga 114  Q
    | |||||||||    
T  4155881 tggaaacatga 4155871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 163 - 229
Target Start/End: Complemental strand, 4155820 - 4155754
Alignment:
Q  163 atgaagttctgggttcgtgcatgaattttatgagtttttgggtttttccttgctgttgttgatgatg 229  Q
    |||||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  4155820 atgaagttatgggtttgtgtatgaattttatgagtttttgggtttttccttgctgttgttgatgatg 4155754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 163 - 209
Target Start/End: Complemental strand, 40262878 - 40262832
Alignment:
Q  163 atgaagttctgggttcgtgcatgaattttatgagtttttgggttttt 209  Q
    ||||||||||||||| ||| ||||||||||||||||| |||||||||    
T  40262878 atgaagttctgggtttgtgtatgaattttatgagtttctgggttttt 40262832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 226
Target Start/End: Original strand, 38676865 - 38676929
Alignment:
Q  163 atgaagttctgggttcgtgcatgaattttatgagtttttgg-gtttttccttgctgttgttgatg 226  Q
    ||||||||||| ||| ||| ||||||||||||||||| |||  ||||| |||| |||||||||||    
T  38676865 atgaagttctgagtttgtgaatgaattttatgagtttctggatttttttcttgttgttgttgatg 38676929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 99; Significance: 6e-49; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 4 - 114
Target Start/End: Complemental strand, 6229110 - 6229000
Alignment:
Q  4 agttttaaagagatatggttctggaatttgtatggaaagagatatagttttggaatttgtatggaaaagatattgggaagaagatgggttaggttataca 103  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||    
T  6229110 agttttaaagagatatgattctggaatttgtatggaaagagatatagttttggaatttgtatggaaaggatattgggaagaagatgagttaggttataca 6229011  T
Q  104 tagaaacatga 114  Q
    |||||||||||    
T  6229010 tagaaacatga 6229000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 4 - 114
Target Start/End: Complemental strand, 17245036 - 17244926
Alignment:
Q  4 agttttaaagagatatggttctggaatttgtatggaaagagatatagttttggaatttgtatggaaaagatattgggaagaagatgggttaggttataca 103  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||    
T  17245036 agttttaaagagatatggttctggaatttgtatagaaagagatatagttttggaatttgtatggaaaggatattgggaagaagatgagttaggttataca 17244937  T
Q  104 tagaaacatga 114  Q
    |||||||||||    
T  17244936 tagaaacatga 17244926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 163 - 229
Target Start/End: Complemental strand, 6228951 - 6228885
Alignment:
Q  163 atgaagttctgggttcgtgcatgaattttatgagtttttgggtttttccttgctgttgttgatgatg 229  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||    
T  6228951 atgaagttctgggtttgtgtatgaattttatgagtttttgggttttttcttgctgttgttgatgatg 6228885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 191 - 229
Target Start/End: Complemental strand, 17244858 - 17244820
Alignment:
Q  191 tatgagtttttgggtttttccttgctgttgttgatgatg 229  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  17244858 tatgagtttttggttttttccttgctgttgttgatgatg 17244820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 99; Significance: 6e-49; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 4 - 114
Target Start/End: Complemental strand, 19184978 - 19184868
Alignment:
Q  4 agttttaaagagatatggttctggaatttgtatggaaagagatatagttttggaatttgtatggaaaagatattgggaagaagatgggttaggttataca 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||||    
T  19184978 agttttaaagagatatggttctggaatttgtatggaaagagatatagttttggaatttgtacggaaaggatattgggaagaagatgagttaggttataca 19184879  T
Q  104 tagaaacatga 114  Q
    |||||||||||    
T  19184878 tagaaacatga 19184868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 163 - 229
Target Start/End: Complemental strand, 19184819 - 19184753
Alignment:
Q  163 atgaagttctgggttcgtgcatgaattttatgagtttttgggtttttccttgctgttgttgatgatg 229  Q
    ||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||    
T  19184819 atgaagttctgggtttgtgtatgaattttaagagtttttgggtttttccttgctgttgttgatgatg 19184753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 163 - 209
Target Start/End: Complemental strand, 2596641 - 2596595
Alignment:
Q  163 atgaagttctgggttcgtgcatgaattttatgagtttttgggttttt 209  Q
    ||||||||||||||| ||| ||||||||||||||||||||| |||||    
T  2596641 atgaagttctgggtttgtgtatgaattttatgagtttttggattttt 2596595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 4 - 114
Target Start/End: Complemental strand, 23991648 - 23991538
Alignment:
Q  4 agttttaaagagatatggttctggaatttgtatggaaagagatatagttttggaatttgtatggaaaagatattgggaagaagatgggttaggttataca 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |  ||||| |||||||    
T  23991648 agttttaaagagatatggttctggaatttgtatggaaagagatatagttttggaatttgtatggaaaggatattaggaagaaggtaagttagcttataca 23991549  T
Q  104 tagaaacatga 114  Q
    |||||| ||||    
T  23991548 tagaaaaatga 23991538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 163 - 229
Target Start/End: Complemental strand, 23991488 - 23991422
Alignment:
Q  163 atgaagttctgggttcgtgcatgaattttatgagtttttgggtttttccttgctgttgttgatgatg 229  Q
    |||||||||| |||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||    
T  23991488 atgaagttctcggtttgtgtatgaattttatgagtttttgggttttttcttgctgttgttgatgatg 23991422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 225
Target Start/End: Original strand, 15741420 - 15741483
Alignment:
Q  163 atgaagttctgggttcgtgcatgaattttatgagtttttggg-tttttccttgctgttgttgat 225  Q
    ||||||||||||||| ||| ||||||||||||||||| |||| ||||| ||||||| |||||||    
T  15741420 atgaagttctgggtttgtgtatgaattttatgagtttctgggtttttttcttgctgctgttgat 15741483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 209
Target Start/End: Complemental strand, 38961306 - 38961260
Alignment:
Q  163 atgaagttctgggttcgtgcatgaattttatgagtttttgggttttt 209  Q
    |||||||| |||||| ||| ||||||||||||||||| |||||||||    
T  38961306 atgaagttttgggtttgtgtatgaattttatgagtttctgggttttt 38961260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 226
Target Start/End: Complemental strand, 43727536 - 43727472
Alignment:
Q  163 atgaagttctgggttcgtgcatgaattttatgagtttttgg-gtttttccttgctgttgttgatg 226  Q
    |||||||||||| || ||| ||||||||||||||||| |||  ||||| |||| |||||||||||    
T  43727536 atgaagttctggatttgtgtatgaattttatgagtttctggatttttttcttgttgttgttgatg 43727472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 4729 times since January 2019
Visitors: 4839