View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0739_high_23 (Length: 250)

Name: NF0739_high_23
Description: NF0739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0739_high_23
NF0739_high_23
[»] chr8 (10 HSPs)
chr8 (62-236)||(2916116-2916293)
chr8 (63-246)||(3002274-3002460)
chr8 (101-234)||(2911160-2911296)
chr8 (62-234)||(2711273-2711448)
chr8 (64-234)||(3170257-3170430)
chr8 (63-234)||(2980181-2980355)
chr8 (63-234)||(2989289-2989463)
chr8 (82-228)||(3282497-3282640)
chr8 (83-234)||(3142153-3142307)
chr8 (64-225)||(9851096-9851260)
[»] chr1 (1 HSPs)
chr1 (62-234)||(10755647-10755822)
[»] chr6 (1 HSPs)
chr6 (63-234)||(18355689-18355863)
[»] scaffold0065 (1 HSPs)
scaffold0065 (64-234)||(45409-45582)
[»] chr7 (1 HSPs)
chr7 (92-234)||(3919139-3919284)


Alignment Details
Target: chr8 (Bit Score: 156; Significance: 5e-83; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 62 - 236
Target Start/End: Complemental strand, 2916293 - 2916116
Alignment:
Q  62 gatgtaaggagagaaacttgctcttttgtattagaatcagatatcattggtagagaagataataaaaaagagattgtaaatttattgaggcaaccacata 161  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2916293 gatgtaaggagagaaacttgctcttttgtattagaatcagatatcattggtagagaagataataaaaaagagattgtaaatttattgaggcaaccacata 2916194  T
Q  162 gaa---acaatgtctccttgattgccattgttggtattggcggtttaggtaagacagctcttgctcagttggtatata 236  Q
    |||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  2916193 gaaaccacaatgtctccttgattgccattgttggtattggcggtttaggtaagacagctcttgctcaactggtatata 2916116  T

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Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 63 - 246
Target Start/End: Original strand, 3002274 - 3002460
Alignment:
Q  63 atgtaaggagagaaacttgctcttttgtattagaatcagatatcattggtagagaagataataaaaaagagattgtaaatttattgaggcaaccacatag 162  Q
    ||||| |||| |||||| | ||||| || |||||||| ||||||||||| ||||||||  ||||||| |||||| || |  | ||||| ||||||||| |    
T  3002274 atgtagggagggaaactagttctttggtgttagaatcggatatcattggaagagaagacgataaaaaggagattatacaccttttgagacaaccacatgg 3002373  T
Q  163 aaac---aatgtctccttgattgccattgttggtattggcggtttaggtaagacagctcttgctcagttggtatatattgttggaga 246  Q
    ||||   ||||||||||||||||| |||||||| ||||| |||||||| |||||| ||||||||||||||||||||| || ||||||    
T  3002374 aaaccaaaatgtctccttgattgctattgttgggattggtggtttaggaaagacaactcttgctcagttggtatataatgatggaga 3002460  T

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Target: chr8; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 101 - 234
Target Start/End: Complemental strand, 2911296 - 2911160
Alignment:
Q  101 gatatcattggtagagaagataataaaaaagagattgtaaatttattgaggcaaccacataga---aacaatgtctccttgattgccattgttggtattg 197  Q
    |||||||| || |||||| |||| |||||||||||| ||| |||||||||||| |  ||||||    |||| ||||||||||| || |||||||||||||    
T  2911296 gatatcatcggaagagaaaataacaaaaaagagattataagtttattgaggcagcatcatagagaccacaacgtctccttgatagctattgttggtattg 2911197  T
Q  198 gcggtttaggtaagacagctcttgctcagttggtata 234  Q
    | |||||||| ||||||||||||||||||||||||||    
T  2911196 gtggtttaggcaagacagctcttgctcagttggtata 2911160  T

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Target: chr8; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 62 - 234
Target Start/End: Complemental strand, 2711448 - 2711273
Alignment:
Q  62 gatgtaaggagagaaacttgctcttttgtattagaatcagatatcattggtagagaagataataaaaaagagattgtaaatttattgaggcaaccacata 161  Q
    ||||||||||| |||| | | |||||||| ||||||||||| || ||||| ||||||||| |||||||  ||||| |||  || ||||||||| |||||     
T  2711448 gatgtaaggagggaaagtagttcttttgtgttagaatcagagattattggaagagaagatgataaaaagaagattataagcttgttgaggcaatcacatg 2711349  T
Q  162 gaaac---aatgtctccttgattgccattgttggtattggcggtttaggtaagacagctcttgctcagttggtata 234  Q
     |||    |||||||||||| |||| |||||||||||||| ||||| || ||||||||||||||||| ||||||||    
T  2711348 aaaatcagaatgtctccttggttgctattgttggtattggtggtttgggaaagacagctcttgctcaattggtata 2711273  T

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Target: chr8; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 64 - 234
Target Start/End: Complemental strand, 3170430 - 3170257
Alignment:
Q  64 tgtaaggagagaaacttgctcttttgtattagaatcagatatcattggtagagaagataataaaaaagagattgtaaatttattgaggcaaccacataga 163  Q
    ||||||||| |||||  | |||||||| ||||||||||| |||||||| ||||||||| |||||||  ||||  |||  || ||||||||| |||||  |    
T  3170430 tgtaaggagggaaacaagttcttttgtgttagaatcagagatcattggaagagaagatgataaaaagaagatcataagcttgttgaggcaatcacatgaa 3170331  T
Q  164 aac---aatgtctccttgattgccattgttggtattggcggtttaggtaagacagctcttgctcagttggtata 234  Q
    ||    |||||||||||| |||| |||||||||||||| ||||| || ||||||||||||||||| ||||||||    
T  3170330 aatcagaatgtctccttggttgctattgttggtattggtggtttgggaaagacagctcttgctcaattggtata 3170257  T

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Target: chr8; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 63 - 234
Target Start/End: Original strand, 2980181 - 2980355
Alignment:
Q  63 atgtaaggagagaaacttgctcttttgtattagaatcagatatcattggtagagaagataataaaaaagagattgtaaatttattgaggcaaccacatag 162  Q
    |||||||||| |||||||| |||| ||| ||||||||| |||||||||| ||||||||| |||||||  ||||| |||  || ||||||||| |||||      
T  2980181 atgtaaggagggaaacttgttcttatgtgttagaatcaaatatcattggaagagaagatgataaaaacaagattataagcttgttgaggcaatcacatga 2980280  T
Q  163 aaa-caat--gtctccttgattgccattgttggtattggcggtttaggtaagacagctcttgctcagttggtata 234  Q
    ||| |||   || ||  || |||| |||||||||||||| ||||| || ||||| ||||||||||| ||||||||    
T  2980281 aaatcaacaagtttctgtggttgctattgttggtattggtggtttgggaaagacggctcttgctcaattggtata 2980355  T

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Target: chr8; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 63 - 234
Target Start/End: Original strand, 2989289 - 2989463
Alignment:
Q  63 atgtaaggagagaaacttgctcttttgtattagaatcagatatcattggtagagaagataataaaaaagagattgtaaatttattgaggcaaccacatag 162  Q
    |||||||||| ||||||||||||| ||| |||||||| || |||||||| ||||||||  || ||||   |||| |||  || ||||||||| ||||| |    
T  2989289 atgtaaggagggaaacttgctcttatgtgttagaatctgagatcattggaagagaagaagatcaaaacacgattataagcttgttgaggcaatcacat-g 2989387  T
Q  163 aa----acaatgtctccttgattgccattgttggtattggcggtttaggtaagacagctcttgctcagttggtata 234  Q
    ||    | |||||||| ||| |||| |||||||||||||| ||||| || |||||||||||||||||  |||||||    
T  2989388 aacatcagaatgtctcattggttgctattgttggtattggtggtttgggaaagacagctcttgctcaactggtata 2989463  T

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Target: chr8; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 82 - 228
Target Start/End: Complemental strand, 3282640 - 3282497
Alignment:
Q  82 ctcttttgtattagaatcagatatcattggtagagaagataataaaaaagagattgtaaatttattgaggcaaccacatagaaacaatgtctccttgatt 181  Q
    ||||||| | ||||||||| |||||| ||| ||||||||| ||||||| |||||| ||||| | ||||||||||||| | ||   ||| |||| |  |||    
T  3282640 ctcttttttgttagaatcaaatatcaatggaagagaagatgataaaaaggagattataaatctcttgaggcaaccacgtgga---aatatctcatcaatt 3282544  T
Q  182 gccattgttggtattggcggtttaggtaagacagctcttgctcagtt 228  Q
    || ||||| |||||||| ||| |||| |||||| |||||||||||||    
T  3282543 gctattgtaggtattggaggtataggcaagacaactcttgctcagtt 3282497  T

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Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 83 - 234
Target Start/End: Complemental strand, 3142307 - 3142153
Alignment:
Q  83 tcttttgtattagaatcagatatcattggtagagaagataataaaaaagagattgtaaatttattgaggcaaccacat-agaaacaa--tgtctccttga 179  Q
    |||||||| ||||| |||||||||||||| ||||| ||| ||||||| || |||||||   | ||||||||| ||||| | || |||  ||||||  ||     
T  3142307 tcttttgtgttagagtcagatatcattggaagagatgatgataaaaatgacattgtaagcatgttgaggcaatcacatgaaaatcaacgtgtctctgtgg 3142208  T
Q  180 ttgccattgttggtattggcggtttaggtaagacagctcttgctcagttggtata 234  Q
    |||| |||||||| ||||| ||||| || |||||||||||| |||| ||||||||    
T  3142207 ttgctattgttgggattggtggtttgggaaagacagctctttctcaattggtata 3142153  T

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Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 64 - 225
Target Start/End: Complemental strand, 9851260 - 9851096
Alignment:
Q  64 tgtaaggagagaaacttgctcttttgtattagaatcagatatcattggtagagaagataataaaaaagagattgtaaatttattgaggcaaccacataga 163  Q
    |||||||||||| ||| | |||||||| || ||||| ||||||||||| ||||||||| ||||||   ||||| |||  || ||||| |||||||||  |    
T  9851260 tgtaaggagagagactagttcttttgtgttggaatcggatatcattggaagagaagatgataaaatgaagattataagcttgttgagacaaccacatgaa 9851161  T
Q  164 a---acaatgtctccttgattgccattgttggtattggcggtttaggtaagacagctcttgctca 225  Q
    |   | |||||||| ||||||||  |||||||  |||| ||||| || |||||| ||||||||||    
T  9851160 aatcaaaatgtctctttgattgctgttgttggatttggtggtttgggaaagacaactcttgctca 9851096  T

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Target: chr1 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 62 - 234
Target Start/End: Complemental strand, 10755822 - 10755647
Alignment:
Q  62 gatgtaaggagagaaacttgctcttttgtattagaatcagatatcattggtagagaagataataaaaaagagattgtaaatttattgaggcaaccacata 161  Q
    ||||||||||| |||||| | |||||||| ||||||||| |||||||||| |||||| || |||||||  | ||| ||| ||| |||| |||| |||||     
T  10755822 gatgtaaggagggaaactagttcttttgtgttagaatcaaatatcattggaagagaatatgataaaaagaaaattataagtttgttgatgcaatcacatg 10755723  T
Q  162 gaaac---aatgtctccttgattgccattgttggtattggcggtttaggtaagacagctcttgctcagttggtata 234  Q
     |||    |||||||||||| |||| |||||||||||||| |||||||| ||||| ||||||||||| ||||||||    
T  10755722 aaaatcagaatgtctccttggttgctattgttggtattggtggtttagggaagacggctcttgctcaattggtata 10755647  T

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Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 63 - 234
Target Start/End: Original strand, 18355689 - 18355863
Alignment:
Q  63 atgtaaggagagaaacttgctcttttgtattagaatcagatatcattggtagagaagataataaaaaagagattgtaaatttattgaggcaaccacatag 162  Q
    |||||||||| ||||||||||||| ||| |||||||| || |||||||| ||||||||  |||||||  ||||| |||  || ||||||||| ||||| |    
T  18355689 atgtaaggagggaaacttgctcttatgtgttagaatctgagatcattggaagagaagaagataaaaacaagattataagcttgttgaggcaatcacat-g 18355787  T
Q  163 aa----acaatgtctccttgattgccattgttggtattggcggtttaggtaagacagctcttgctcagttggtata 234  Q
    ||    | |||||||| ||| |||| |||||||||||||| ||||| || |||||||||||||||||  |||||||    
T  18355788 aacatcagaatgtctcattggttgctattgttggtattggtggtttgggaaagacagctcttgctcaactggtata 18355863  T

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Target: scaffold0065 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 64 - 234
Target Start/End: Original strand, 45409 - 45582
Alignment:
Q  64 tgtaaggagagaaacttgctcttttgtattagaatcagatatcattggtagagaagataataaaaaagagattgtaaatttattgaggcaaccacataga 163  Q
    ||||||||| |||||  | |||||||| | ||||||||||||||| || ||||||||| ||| |||  ||||  |||  || ||||||||| |||||  |    
T  45409 tgtaaggagggaaacaagttcttttgtgtcagaatcagatatcatcggaagagaagatgatagaaataagatcataagcttgttgaggcaatcacatgaa 45508  T
Q  164 aac---aatgtctccttgattgccattgttggtattggcggtttaggtaagacagctcttgctcagttggtata 234  Q
    ||    |||||||||||| |||| ||||| || ||||||||||| || ||||||||||||||||| ||||||||    
T  45509 aatcagaatgtctccttggttgctattgtagggattggcggtttgggaaagacagctcttgctcaattggtata 45582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 234
Target Start/End: Complemental strand, 3919284 - 3919139
Alignment:
Q  92 ttagaatcagatatcattggtagagaagataataaaaaagagattgtaaatttattgaggcaaccacatagaa---acaatgtctccttgattgccattg 188  Q
    |||||||| ||||||||||| ||||||||| |||||||  ||||| |||  || |||| |||||||||| |||   | |||||||   || |||  ||||    
T  3919284 ttagaatcggatatcattggaagagaagatgataaaaagaagattataagcttgttgatgcaaccacatggaaatcaaaatgtctttgtggttggtattg 3919185  T
Q  189 ttggtattggcggtttaggtaagacagctcttgctcagttggtata 234  Q
    |||| ||||| |||||||| |||||| |||||||||| ||| ||||    
T  3919184 ttgggattggtggtttaggaaagacaactcttgctcaattgatata 3919139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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