View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0739_high_3 (Length: 473)

Name: NF0739_high_3
Description: NF0739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0739_high_3
NF0739_high_3
[»] chr8 (4 HSPs)
chr8 (147-404)||(6348454-6348711)
chr8 (1-99)||(6349972-6350070)
chr8 (99-136)||(6351578-6351615)
chr8 (401-433)||(28249845-28249877)
[»] chr2 (2 HSPs)
chr2 (397-430)||(5935260-5935293)
chr2 (399-430)||(34951111-34951142)
[»] chr3 (2 HSPs)
chr3 (399-441)||(8735025-8735067)
chr3 (399-441)||(9087266-9087308)
[»] chr7 (1 HSPs)
chr7 (404-441)||(114376-114413)
[»] chr6 (2 HSPs)
chr6 (404-441)||(2539439-2539476)
chr6 (404-433)||(31721916-31721945)
[»] chr1 (2 HSPs)
chr1 (404-441)||(12523163-12523200)
chr1 (397-430)||(49852816-49852849)


Alignment Details
Target: chr8 (Bit Score: 238; Significance: 1e-131; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 147 - 404
Target Start/End: Complemental strand, 6348711 - 6348454
Alignment:
Q  147 atgaaggaagtgttagttctggaaatcgattgagacaattattaccttcccatgaaatgttaggattttaagtttcccctatcaagacattgtcatgctt 246  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  6348711 atgaaggaagtgttagttctggaaatcgattgagacaattattaccttcccatgaaatgttaggaatttaagtttcccctatctagacattgtcatgctt 6348612  T
Q  247 taatttgcctttacgagtcaaagttcgtttgccacttcccttctcattctcgttttctgaattagtggtcttttatcttgaaaatgacaagattaagaaa 346  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6348611 taatttgcctttacgagtcaaagttcgtttgccacttcccttctcattctcgttttctgaattagtggtcttttatcttgaaaatgacaagattaagaaa 6348512  T
Q  347 attatcggttgtaaaaatagagaataatcattggcaaagctctctgactattgagttt 404  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  6348511 attatcgggtgtaaaactagagaataatcattggcaaagctctctgactattgggttt 6348454  T

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Target: chr8; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 6350070 - 6349972
Alignment:
Q  1 aaaacaaatcggaacagagaatagacatggaaaaaagaatagatcaagcaaaagaacaacgaaagtaataaatgaaagaagttacaatagaacctgcgt 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6350070 aaaacaaatcggaacagagaatagacatggaaaaaagaatagatcaagcaaaagaacaacgaaagtaataaatgaaagaagttacaatagaacctgcgt 6349972  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 99 - 136
Target Start/End: Original strand, 6351578 - 6351615
Alignment:
Q  99 taacaagcaaggaagaaatattaacatacaaaaaatat 136  Q
    ||||||||||||||||||||||||||||||||||||||    
T  6351578 taacaagcaaggaagaaatattaacatacaaaaaatat 6351615  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 401 - 433
Target Start/End: Complemental strand, 28249877 - 28249845
Alignment:
Q  401 gttttactttttccaccctatgtctttccttgc 433  Q
    |||||||||||||||||||||| ||||||||||    
T  28249877 gttttactttttccaccctatgcctttccttgc 28249845  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 397 - 430
Target Start/End: Original strand, 5935260 - 5935293
Alignment:
Q  397 ttgagttttactttttccaccctatgtctttcct 430  Q
    ||||||||||||||||||||||||||||||||||    
T  5935260 ttgagttttactttttccaccctatgtctttcct 5935293  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 399 - 430
Target Start/End: Complemental strand, 34951142 - 34951111
Alignment:
Q  399 gagttttactttttccaccctatgtctttcct 430  Q
    ||||||||||||||||||||||||||||||||    
T  34951142 gagttttactttttccaccctatgtctttcct 34951111  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 399 - 441
Target Start/End: Original strand, 8735025 - 8735067
Alignment:
Q  399 gagttttactttttccaccctatgtctttccttgcacgtccta 441  Q
    |||||||||||||  ||| ||||||||||||||||||||||||    
T  8735025 gagttttacttttctcacactatgtctttccttgcacgtccta 8735067  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 399 - 441
Target Start/End: Original strand, 9087266 - 9087308
Alignment:
Q  399 gagttttactttttccaccctatgtctttccttgcacgtccta 441  Q
    |||||||||||||  ||| ||||||||||||||||||||||||    
T  9087266 gagttttacttttctcacactatgtctttccttgcacgtccta 9087308  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 441
Target Start/End: Complemental strand, 114413 - 114376
Alignment:
Q  404 ttactttttccaccctatgtctttccttgcacgtccta 441  Q
    ||||||||||||||||||||||||||| ||||| ||||    
T  114413 ttactttttccaccctatgtctttcctcgcacgcccta 114376  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 441
Target Start/End: Original strand, 2539439 - 2539476
Alignment:
Q  404 ttactttttccaccctatgtctttccttgcacgtccta 441  Q
    ||||||||||||||||||||||||||| ||||| ||||    
T  2539439 ttactttttccaccctatgtctttcctcgcacgcccta 2539476  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 433
Target Start/End: Original strand, 31721916 - 31721945
Alignment:
Q  404 ttactttttccaccctatgtctttccttgc 433  Q
    ||||||||||||||||||||||||||||||    
T  31721916 ttactttttccaccctatgtctttccttgc 31721945  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 441
Target Start/End: Original strand, 12523163 - 12523200
Alignment:
Q  404 ttactttttccaccctatgtctttccttgcacgtccta 441  Q
    ||||||||||||||||||||||||||| ||||| ||||    
T  12523163 ttactttttccaccctatgtctttcctcgcacgcccta 12523200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 430
Target Start/End: Complemental strand, 49852849 - 49852816
Alignment:
Q  397 ttgagttttactttttccaccctatgtctttcct 430  Q
    ||||||||||||||| ||||||||||||||||||    
T  49852849 ttgagttttacttttcccaccctatgtctttcct 49852816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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