View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0739_high_5 (Length: 456)
Name: NF0739_high_5
Description: NF0739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0739_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 21 - 428
Target Start/End: Complemental strand, 44017455 - 44017054
Alignment:
| Q |
21 |
acatcatcacaaggttggttttggctctatcatttagtagcagagacaaagatagttaaggtacattctggtatatgtctaagataacaaatagaaagct |
120 |
Q |
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| T |
44017455 |
acatcatcacaaggttggttttggctctatcatttagtagcagagacaaagatagttaaggtacattctggtatatgtctaagataacaaatagaaagct |
44017356 |
T |
|
| Q |
121 |
ttgtccattcctttttgacttttctctcttttctattatctcccttcttatacatactacttgacactatctctttttgtttcacatgcttttgtttaaa |
220 |
Q |
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||||||||||||||||||| ||||||| | ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
44017355 |
ttgtccattcctttttgaccattctctcatctctattatctcccttcttaaacatactacttgacactatctctttttgtttcacatgcttgtgtttaaa |
44017256 |
T |
|
| Q |
221 |
acgtttgtgtgaaacttaagcatcatgcatgtgctctcctaaactagtagtcttttattaccttcaccttcaccttcaccctcatcttctacattaatct |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |
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| T |
44017255 |
acgtttgtgtgaaacttaagcatcatgcatgtgctctcctaaactagtagtcttttatcaccttcacctt------caccctcatcttctacattaatct |
44017162 |
T |
|
| Q |
321 |
ccgaccccaagtaaagccgccattttcacaatcaaaaatggaaaatattagtgttacctctttgttcttttgcttactcttttttagcataacaaagata |
420 |
Q |
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|| || |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44017161 |
ccaactccaagtaaagtcaccattttcacaatcaaaaatggaaaatattagtgttacctctttgttcttttgcttactcttttttagcataacaaagata |
44017062 |
T |
|
| Q |
421 |
caagtaat |
428 |
Q |
| |
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|||||||| |
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| T |
44017061 |
caagtaat |
44017054 |
T |
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