View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0739_high_7 (Length: 358)
Name: NF0739_high_7
Description: NF0739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0739_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 138; Significance: 4e-72; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 154 - 307
Target Start/End: Original strand, 6953460 - 6953613
Alignment:
| Q |
154 |
ttaacatatatctcattaacatccaaccacataagctccaaagttttaagacttcggttttcgactttgagactagtgaacccttttgactcaaggagac |
253 |
Q |
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| T |
6953460 |
ttaacatatatctcattaacatccaaccacataagctccaaagttttaagacttcggttttcgattttgagactagtgaacccttttgactcaaggagac |
6953559 |
T |
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| Q |
254 |
taaacttctccaaagcaacacaattttccaaaattccattgatggtactatttg |
307 |
Q |
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| T |
6953560 |
gaaacttctccaaaccaacacaattttccaaaattccattgatggtacaatttg |
6953613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 18 - 162
Target Start/End: Original strand, 6953129 - 6953275
Alignment:
| Q |
18 |
atatcttgagttttcagaatgctttgataacttggattgcaagcagaagagaaactc--gagtttttcggagtaaattctaagaccctttggaggacaac |
115 |
Q |
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| T |
6953129 |
atatcttgagttttcagaatgctttgataacttggattgcaagcagaagagaaactcaagagtttttcggagtaaattctaagactctttggagggcaac |
6953228 |
T |
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| Q |
116 |
ttaaagaatcaatcaccaaaacatgaagctcctcaacattaacatat |
162 |
Q |
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| T |
6953229 |
ttaaagaatcaatcaccaaaacttgaagctcctcaacattaacatat |
6953275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 99 - 355
Target Start/End: Complemental strand, 29147795 - 29147539
Alignment:
| Q |
99 |
accctttggaggacaacttaaagaatcaatcaccaaaacatgaagctcctcaacattaacatatatctcattaacatccaaccacataagctccaaagtt |
198 |
Q |
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| T |
29147795 |
accctttggagtgcaaactagagaatcaattacaataacttgtagatcgtcgacattaacatctatctctttaacattcaaccataaaagctccaaaaat |
29147696 |
T |
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| Q |
199 |
ttaagacttcggttttcgactttgagactagtgaacccttttgactcaaggagactaaacttctccaaagcaacacaattttccaaaattccattgatgg |
298 |
Q |
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| T |
29147695 |
ttaagattttggttttcaatcttgaggctattgaacccaattgagtcaatgagactacacttctccaaaccataacaatttttcaaaattccattgatga |
29147596 |
T |
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| Q |
299 |
tactatttgccataagcatattcctcaacttcaaatttttcaaatttttacaacttt |
355 |
Q |
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| T |
29147595 |
tactattctccatagccaacttcttcaacttcaaaattttcagcttttcacaacttt |
29147539 |
T |
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