View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0739_low_1 (Length: 658)
Name: NF0739_low_1
Description: NF0739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0739_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 218 - 458
Target Start/End: Original strand, 32684851 - 32685095
Alignment:
| Q |
218 |
atacaatttgaatagcaaatatatgtacttacctcataagacatgttatcaatgtctaagcgcatatcttgatgttcatcaaccagattttcatcttcat |
317 |
Q |
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| T |
32684851 |
atacaatttgaatatcaa-tacatgtacttacctcataagacatgttatcaatgtccaagcgcatatcttgatgttcatcaaccagattttcatcttcat |
32684949 |
T |
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| Q |
318 |
cacttaaatcactttcctacacaaatgaagtttaattgataagtaaatctatatgttttgctaaaattattatgcggaag----taaatcactttcctaa |
413 |
Q |
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| T |
32684950 |
caattaaatcactttcctacacaaatgaagtttaattgataagtaaatctatatgttttcctaaaattattatgcggaagtaattaaatcactctcctaa |
32685049 |
T |
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| Q |
414 |
aaaatttatttat-cttttaagttttaaaacaaataacaaagtaaa |
458 |
Q |
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| T |
32685050 |
aaaatttatttatccttttaagttttaaaacaaataacaaagtaaa |
32685095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 517 - 645
Target Start/End: Original strand, 32685094 - 32685222
Alignment:
| Q |
517 |
aattttattgtttgctagtagtgagaaacgttacatcaataaagatgaagctggaggggttaacacttcgatttctgagcgttatctcaggtatgactcc |
616 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32685094 |
aattttattgtttgctagtagtgagaaacattacatcaataaagatgaagctggaggggttaacacttcgatttctgagcgttatctcaggtatgactcc |
32685193 |
T |
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| Q |
617 |
atgtggtcgtaaaatctgaaggcccgtct |
645 |
Q |
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| T |
32685194 |
atgtggttgtaaaatctgaaggcccgtct |
32685222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 29 - 142
Target Start/End: Original strand, 32684685 - 32684798
Alignment:
| Q |
29 |
aattttgtcttgagttgagtttcaattgttttctctggtatactagtgcttacatcgccaatcctctcacccaatgcaacaagttcctataaataataat |
128 |
Q |
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||||||||||| |||||| ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32684685 |
aattttgtcttaagttgactttcaattgttttctctggtaaactagtgcttacattgccaatcctctcacccaatgcaacaagttcctataaataataat |
32684784 |
T |
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| Q |
129 |
ttcaagtgtaaata |
142 |
Q |
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|||||||||||||| |
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| T |
32684785 |
ttcaagtgtaaata |
32684798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 239 - 359
Target Start/End: Original strand, 32694444 - 32694564
Alignment:
| Q |
239 |
tatgtacttacctcataagacatgttatcaatgtctaagcgcatatcttgatgttcatcaaccagattttcatcttcatcacttaaatcactttcctaca |
338 |
Q |
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|||| |||||||||||||||||| | || ||||| |||||||||||| | || | |||| ||||||| | |||||||| ||||| || ||||| | |
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| T |
32694444 |
tatgcacttacctcataagacatatcctctatgtccaagcgcatatctcggtgatggtcaatcagatttcccacttcatcaattaaagcaacatcctata |
32694543 |
T |
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| Q |
339 |
caaatgaagtttaattgataa |
359 |
Q |
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|||||||||||| |||||||| |
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| T |
32694544 |
caaatgaagtttcattgataa |
32694564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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