View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0739_low_11 (Length: 449)
Name: NF0739_low_11
Description: NF0739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0739_low_11 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 15 - 449
Target Start/End: Complemental strand, 6954133 - 6953708
Alignment:
| Q |
15 |
tattgagaaacaggacgaaaactatttgggaagtaacgagttacaagaaaactatgctttctttgaagggaaagatgaaaactatttttacattaagggg |
114 |
Q |
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| T |
6954133 |
tattgagaaacaggaagaaaactatttgggaattaacgagttacaagaaaactatgctttctttgaagggaaagatgaaaactatttttacattaacggg |
6954034 |
T |
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| Q |
115 |
nnnnnnnnnnnnnnnnnnnngtaacaatcatatggagaaagacatgatagttaagtgtgttatcagatgatatttaacattgcataatatcttatctttc |
214 |
Q |
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| T |
6954033 |
atccgaaagaaaaaa-----gtaacaatcatatggagaaagacatgata----agtgtgttatcagatgatatttaacattgcataatatcttatctttc |
6953943 |
T |
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| Q |
215 |
tattgatgatgtttttagaacaagcattttatctaatagatggttaaatttatggaagaatgcattgcatcttgattttgatttgactcgcatgaacaaa |
314 |
Q |
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| T |
6953942 |
tattgatgatgtttttagaacaagcattttatctaatagatggttaaatttatggaagaatgcgttgcatcttgattttgattggactcgcatgaacaaa |
6953843 |
T |
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| Q |
315 |
cccttgtttttaaatccaaaagttggcactaaacaagatgctatcaaatatgctgaaattgttaacactgtattgcgtcaacacgaaggtaatttcgtta |
414 |
Q |
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| T |
6953842 |
cccttgtttttaaatccaaaagttggcactaaacaagatgctatcaaatatgctgaaattgttgacactatattgcgtcaacacgaaggtaatttcatta |
6953743 |
T |
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| Q |
415 |
gttgttgcttcaaacattttcctgaaagtcttgat |
449 |
Q |
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| T |
6953742 |
gttgttgcttcaaacattttcctgaaagtcttgat |
6953708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 180 - 319
Target Start/End: Original strand, 29147041 - 29147180
Alignment:
| Q |
180 |
gatgatatttaacattgcataatatcttatctttctattgatgatgtttttagaacaagcattttatctaatagatggttaaatttatggaagaatgcat |
279 |
Q |
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| T |
29147041 |
gatgatattttgcatcgcttaatctcttatctttccattgatgaagctttaagaacaagtattttatcaaagaggtggatacatttgtggaagaatgcaa |
29147140 |
T |
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| Q |
280 |
tgcatcttgattttgatttgactcgcatgaacaaaccctt |
319 |
Q |
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| T |
29147141 |
tgcaccttgattttgatttcacacacatgataaaaccctt |
29147180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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