View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0739_low_12 (Length: 424)

Name: NF0739_low_12
Description: NF0739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0739_low_12
NF0739_low_12
[»] chr6 (3 HSPs)
chr6 (1-403)||(17245045-17245447)
chr6 (1-403)||(6229103-6229506)
chr6 (270-326)||(21283627-21283683)
[»] chr3 (4 HSPs)
chr3 (1-403)||(44316887-44317291)
chr3 (1-403)||(49528539-49528942)
chr3 (1-403)||(13866385-13866789)
chr3 (258-313)||(21817039-21817094)
[»] chr5 (1 HSPs)
chr5 (1-403)||(19184971-19185372)
[»] chr7 (4 HSPs)
chr7 (1-403)||(4155974-4156377)
chr7 (263-327)||(25443331-25443395)
chr7 (206-248)||(40577838-40577880)
chr7 (271-327)||(18297487-18297543)
[»] chr2 (1 HSPs)
chr2 (1-403)||(23991641-23992041)
[»] scaffold0031 (1 HSPs)
scaffold0031 (270-327)||(129062-129119)
[»] chr8 (2 HSPs)
chr8 (258-327)||(44633067-44633136)
chr8 (277-310)||(39270496-39270529)
[»] chr1 (2 HSPs)
chr1 (270-327)||(16963069-16963126)
chr1 (270-323)||(51598306-51598359)
[»] chr4 (2 HSPs)
chr4 (270-306)||(701994-702030)
chr4 (270-306)||(770293-770329)


Alignment Details
Target: chr6 (Bit Score: 331; Significance: 0; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Original strand, 17245045 - 17245447
Alignment:
Q  1 ttaaaactctatctctttccatgttgccttcccattatttataattgtactgttgttgcacttatttgctttaattcaaacggcaatttcatattgctgc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||     
T  17245045 ttaaaactctatctctttccatgttgccttcccattatttataattgtactgttgttgcacttatttgctttaattcaaacgacaatttcatattgatgt 17245144  T
Q  101 atgccctttctttcgaattgaatttctaaagctatgaatcaacactgtgtcgtgcccttttgatttgttgtggttgtcgtggctattttgtttcaatgag 200  Q
    ||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  17245145 atgccctttctttcgaattgaatttcttaggctatgaatcaacactgtgtcttgcccttttgatttgttgtggttgtcgtggctattttgtttcaatgag 17245244  T
Q  201 tttgttttttatgaaggattggtgatgatgagtttagatccaaaaatggnnnnnnnnaaggaatgatgatgatgagtttagatctgaaaatgagtttttg 300  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||        ||||||||||||||||||||||||||||||||||| |||||||    
T  17245245 tttgttttttatgaaggattggtgatgatgagtttagatccgaaaatggttttttttaaggaatgatgatgatgagtttagatctgaaaatgggtttttg 17245344  T
Q  301 tgaaggattggtggtggtgatgatgatagattagattgaatttttgaattggatccaaaaatgggtttctgaatttgtatttgtagaagaagaaatgatg 400  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||    
T  17245345 tgaaggaccggtggtggtgatgatgatagattagattgaatttttgaattggatccaaaaatgggtttttggatttgtatttgtagaagaagaaatgatg 17245444  T
Q  401 atg 403  Q
    |||    
T  17245445 atg 17245447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 403
Target Start/End: Original strand, 6229103 - 6229506
Alignment:
Q  1 ttaaaactctatctctttccatgttgccttcccattatttataattgtactgttgttgcacttatttgctttaattcaaacggcaatttcatattgctgc 100  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||    
T  6229103 ttaaaactctatctctttccatgttgtcttcccattatttataattgtactgttgttgcacttatttgctttaattcaaacgacaatttcatattgttgc 6229202  T
Q  101 atgccctttctttcgaattgaatttctaaagctatgaatcaacactgtgtcgtgcccttttgatttgttgtggttgtcgtggctattttgtttcaatgag 200  Q
    || ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||     
T  6229203 attccctttctttcaaattgaatttctaaggctatgaatcaacactgtgtcgtgcccttttgatttgttgtgg-tgtcgtggctattttgtttcaatgaa 6229301  T
Q  201 tttgttttttatgaaggattggtgatgatgagtttagatccaaaaatg--gnnnnnnnnaaggaatgatgatgatgagtttagatctgaaaatgagtttt 298  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||           ||||||||||||||||| ||||||||||||||||| |||||    
T  6229302 tttgttttttatgaaggattggtgatgatgagtttagatccgaaaatgattttttttttaaggaatgatgatgatgggtttagatctgaaaatgggtttt 6229401  T
Q  299 tgtgaaggattggtggtggtgatgatgatagattagattgaatttttgaattggatccaaaaatgggtttctgaatttgtatttgtagaagaagaaatga 398  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  6229402 tgtgaaggattggtggtggtgatgatgatagattagattgaatttttgaattggatccaaaaatgggtttctggatttgtatttgtagaagatgaaatga 6229501  T
Q  399 tgatg 403  Q
    |||||    
T  6229502 tgatg 6229506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 270 - 326
Target Start/End: Original strand, 21283627 - 21283683
Alignment:
Q  270 tgatgagtttagatctgaaaatgagtttttgtgaaggattggtggtggtgatgatga 326  Q
    ||||||||||||||| ||||||||||||||||||||||||| || || |||||||||    
T  21283627 tgatgagtttagatcagaaaatgagtttttgtgaaggattgatgatgatgatgatga 21283683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 330; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Complemental strand, 44317291 - 44316887
Alignment:
Q  1 ttaaaactctatctctttccatgttgccttcccattatttataattgtactgttgttgcacttatttgctttaattcaaacggcaatttcatattgctgc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||    
T  44317291 ttaaaactctatctctttccatgttgccttcccattatttataattgtactgttgttgcacttatttgctttaattcaaacgacaatttcatattgatgc 44317192  T
Q  101 atgccctttctttcgaattgaatttctaaagctatgaatcaacactgtgtcgtgcccttttgatttgttgtggttgtcgtggctattttgtttcaatgag 200  Q
    ||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  44317191 atgccctttctttcgaattgaatttcttaggctatgaatcaacaatgtgtcgtgcccttttgatttgttgtgtttgtcgtggctattttgtttcaatgag 44317092  T
Q  201 tttgttttttatgaaggattggtgatgatgagtttagatccaaaaatgg--nnnnnnnnaaggaatgatgatgatgagtttagatctgaaaatgagtttt 298  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||          ||||||||||||||||| ||||||||||||||||| |||||    
T  44317091 tttgttttttatgaaggattggtgatgatgagtttagatccgaaaatggttttttttttaaggaatgatgatgatgggtttagatctgaaaatgggtttt 44316992  T
Q  299 tgtgaaggattggtggtggtgatgatgatagattagattgaatttttgaattggatccaaaaatgggtttctgaatttgtatttgtagaagaagaaatga 398  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  44316991 tgtgaaggattggtggtggtgatgatgatagattagattgaatttttgaattggatccaaaaatgggtttctggatttgtatttgtagaagaagaaatga 44316892  T
Q  399 tgatg 403  Q
    |||||    
T  44316891 tgatg 44316887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Original strand, 49528539 - 49528942
Alignment:
Q  1 ttaaaactctatctctttccatgttgccttcccattatttataattgtactgttgttgcacttatttgctttaattcaaacggcaatttcatattgctgc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||    
T  49528539 ttaaaactctatctctttccatgttgccttcccattatttataattgtactgttgttgcacttatttgctttaatttaaacgacaatttcatattgatgc 49528638  T
Q  101 atgccctttctttcgaattgaatttctaaagctatgaatcaacactgtgtcgtgcccttttgatttgttgtggttgtcgtggctattttgtttcaatgag 200  Q
    ||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49528639 atgccctttctttcgaattgaatttcttaggctatgaatcaacattgtgtcgtgcccttttgatttgttgtggttgtcgtggctattttgtttcaatgag 49528738  T
Q  201 tttgttttttatgaaggattggtgatgatgagtttagatccaaaaatgg-nnnnnnnnaaggaatgatgatgatgagtttagatctgaaaatgagttttt 299  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||         ||||||||||||||||| |||||||| |||||||| ||||||    
T  49528739 tttgttttttatgaaggattggtgatgatgagtttagatccgaaaatggtttttttttaaggaatgatgatgatgggtttagatttgaaaatgggttttt 49528838  T
Q  300 gtgaaggattggtggtggtgatgatgatagattagattgaatttttgaattggatccaaaaatgggtttctgaatttgtatttgtagaagaagaaatgat 399  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  49528839 gtgaaggattggtggtggtgatgatgatagattagatttaatttttgaattggatccaaaaatgggtttctggatttgtatttgtagaagaagaaatgat 49528938  T
Q  400 gatg 403  Q
    ||||    
T  49528939 gatg 49528942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 403
Target Start/End: Original strand, 13866385 - 13866789
Alignment:
Q  1 ttaaaactctatctctttccatgttgccttcccattatttataattgtactgttgttgcacttatttgctttaattcaaacggcaatttcatattgctgc 100  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||    
T  13866385 ttaaaactctatctctttccatgttgtcttcccattatttataattgtactgttgttgcacttatttgctttaattcaaacgacaatttcatattgatgc 13866484  T
Q  101 atgccctttctttcgaattgaatttctaaagctatgaatcaacactgtgtcgtgcccttttgatttgttgtggttgtcgtggctattttgtttcaatgag 200  Q
    ||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13866485 atgccttttctttcgaattgaatttcttaggctatgaatcaacactgtgtcgtgcccttttgatttgttgtggttgtcgtggctattttgtttcaatgag 13866584  T
Q  201 tttg-ttttttatgaaggattggtgatgatgagtttagatccaaaaatg-gnnnnnnnnaaggaatgatgatgatgagtttagatctgaaaatgagtttt 298  Q
    |||| ||||||||||||||||||||||||||||||||||||| ||||||          ||||||||||||||||| |||||||||||||||||  ||||    
T  13866585 tttgtttttttatgaaggattggtgatgatgagtttagatccgaaaatgatttttttttaaggaatgatgatgatgggtttagatctgaaaatggttttt 13866684  T
Q  299 tgtgaaggattggtggtggtgatgatgatagattagattgaatttttgaattggatccaaaaatgggtttctgaatttgtatttgtagaagaagaaatga 398  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  13866685 tgtgaaggattggtggtggtgatgatgatagattagattgaatttttgaattggatccaaaaatgggtttctggatttgtatttgtagaagaagaaatga 13866784  T
Q  399 tgatg 403  Q
    |||||    
T  13866785 tgatg 13866789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 258 - 313
Target Start/End: Original strand, 21817039 - 21817094
Alignment:
Q  258 aaggaatgatgatgatgagtttagatctgaaaatgagtttttgtgaaggattggtg 313  Q
    ||||||| ||| | ||| ||||||||| ||||||||||||||||||||||||||||    
T  21817039 aaggaataatggtaatgggtttagatcagaaaatgagtttttgtgaaggattggtg 21817094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Original strand, 19184971 - 19185372
Alignment:
Q  1 ttaaaactctatctctttccatgttgccttcccattatttataattgtactgttgttgcacttatttgctttaattcaaacggcaatttcatattgctgc 100  Q
    ||||||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  19184971 ttaaaactctatctctttccatgctgcctttccagtatttataattgtactgttgttgcacttatttgctttaattcaaacgacaatttcatattgctgc 19185070  T
Q  101 atgccctttctttcgaattgaatttctaaagctatgaatcaacactgtgtcgtgcccttttgatttgttgtggttgtcgtggctattttgtttcaatgag 200  Q
    ||||||||||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  19185071 atgccctttcttttgaattgaatttctaaggctatgaatcaacactgtgtcatgcccttttgatttgttgtggttgtcgtggctattttgtttcaatgag 19185170  T
Q  201 tttgttttttatgaaggattggtgatgatgagtttagatccaaaaatggnnnnnnnnaaggaatgatgatgatgagtttagatctgaaaatgagtttttg 300  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||| |        ||||||||||||||||||||||||||||||||||| |||||||    
T  19185171 tttgttttttatgaaggattggtgatgatgagtttagatccgaaaat-gttttttttaaggaatgatgatgatgagtttagatctgaaaatgggtttttg 19185269  T
Q  301 tgaaggattggtggtggtgatgatgatagattagattgaatttttgaattggatccaaaaatgggtttctgaatttgtatttgtagaagaagaaatgatg 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||||||||||||||||||||    
T  19185270 tgaaggattggtggtggtgatgatgatagattagattgaatttttaaattggatccaaaaatgggtttatggatttgtatttgtagaagaagaaatgatg 19185369  T
Q  401 atg 403  Q
    |||    
T  19185370 atg 19185372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 312; Significance: 1e-176; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 403
Target Start/End: Original strand, 4155974 - 4156377
Alignment:
Q  1 ttaaaactctatctctttccatgttgccttcccattatttataattgtactgttgttgcacttatttgctttaattcaaacggcaatttcatattgctgc 100  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| ||||||    
T  4155974 ttaaaactctatctctttccatgctgcctttccattatttataattgtaccgttgttgcacttatttgctttaattcaaacgacaatttcataatgctgc 4156073  T
Q  101 atgccctttctttcgaattgaatttctaaagctatgaatcaacactgtgtcgtgcccttttgatttgttgtggttgtcgtggctattttgtttcaatgag 200  Q
    ||||||||||||| || |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4156074 atgccctttcttttgacttgaatttctaaggctatgaatcaacactgtgtcgtgcccttttgatttgttgtggttgtcgtggctattttgtttcaatgag 4156173  T
Q  201 tttgttttttatgaaggattggtgatgatgagtttagatccaaaaatg-gnnnnnnnnaaggaatgatgatgatgagtttagatctgaaaatgagttttt 299  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||          ||||||||||||||||| ||||||||||||||||| ||||||    
T  4156174 tttgttttttatgaaggattggtgatgatgagtttagatccgaaaatgatttttttttaaggaatgatgatgatgggtttagatctgaaaatgggttttt 4156273  T
Q  300 gtgaaggattggtggtggtgatgatgatagattagattgaatttttgaattggatccaaaaatgggtttctgaatttgtatttgtagaagaagaaatgat 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||    
T  4156274 gtgaaggattggtggtggtgatgatgatagattagattgaatttttgaattggatccaaaaataggtttatggatttgtatttgtagaagaagaaatgat 4156373  T
Q  400 gatg 403  Q
    ||||    
T  4156374 gatg 4156377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 263 - 327
Target Start/End: Complemental strand, 25443395 - 25443331
Alignment:
Q  263 atgatgatgatgagtttagatctgaaaatgagtttttgtgaaggattggtggtggtgatgatgat 327  Q
    |||||||||||| ||||||||| ||||||| ||||| || ||||||||||| || ||||||||||    
T  25443395 atgatgatgatgggtttagatccgaaaatgggttttggtaaaggattggtgatgatgatgatgat 25443331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 206 - 248
Target Start/End: Original strand, 40577838 - 40577880
Alignment:
Q  206 tttttatgaaggattggtgatgatgagtttagatccaaaaatg 248  Q
    ||||| ||| |||||| ||||||||||||||||||||||||||    
T  40577838 tttttgtgatggattgatgatgatgagtttagatccaaaaatg 40577880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 271 - 327
Target Start/End: Complemental strand, 18297543 - 18297487
Alignment:
Q  271 gatgagtttagatctgaaaatgagtttttgtgaaggattggtggtggtgatgatgat 327  Q
    |||||||||||||| ||||||| ||| | |||||||||||||| || | ||||||||    
T  18297543 gatgagtttagatccgaaaatgggttgtagtgaaggattggtgatgataatgatgat 18297487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 403
Target Start/End: Original strand, 23991641 - 23992041
Alignment:
Q  1 ttaaaactctatctctttccatgttgccttcccattatttataattgtactgttgttgcacttatttgctttaattcaaacggcaatttcatattgctgc 100  Q
    |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  23991641 ttaaaactctatctatttccatgctgccttcccattatttataattgtactgttgttgcacttatttgctttaattcaaaccacaatttcatattgctgc 23991740  T
Q  101 atgccctttctttcgaattgaatttctaaagctatgaatcaacactgtgtcgtgcccttttgatttgttgtggttgtcgtggctattttgtttcaatgag 200  Q
    ||||||||||||| |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23991741 atgccctttcttttgaattgaatttctaagactatgaatcaacactgtgtcgtgcccttttgatttgttgtggttgtcgtggctattttgtttcaatgag 23991840  T
Q  201 tttgttttttatgaaggattggtgatgatgagtttagatccaaaaat--ggnnnnnnnnaaggaatgatgatgatgagtttagatctgaaaatgagtttt 298  Q
    || ||||||||||||||||||| ||||||||||||||||||||||||  |         ||||||||||||||||| |||||||||||||||||||||||    
T  23991841 ttggttttttatgaaggattggggatgatgagtttagatccaaaaatgagtttttttttaaggaatgatgatgatgtgtttagatctgaaaatgagtttt 23991940  T
Q  299 tgtgaaggattggtggtggtgatgatgatagattagattgaatttttgaattggatccaaaaatgggtttctgaatttgtatttgtagaagaagaaatga 398  Q
    |||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||| |||||||||    
T  23991941 tgtgaaggattggtggtgg---tgatgatagattagattgaatttttgaattggatccaaaaat-ggtttctggatttgtatttgttgaacaagaaatga 23992036  T
Q  399 tgatg 403  Q
    |||||    
T  23992037 tgatg 23992041  T

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Target: scaffold0031 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 270 - 327
Target Start/End: Original strand, 129062 - 129119
Alignment:
Q  270 tgatgagtttagatctgaaaatgagtttttgtgaaggattggtggtggtgatgatgat 327  Q
    ||||| ||||||||| ||||||||||||||||||||| ||| || || ||||||||||    
T  129062 tgatgggtttagatcagaaaatgagtttttgtgaaggtttgatgatgatgatgatgat 129119  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 258 - 327
Target Start/End: Complemental strand, 44633136 - 44633067
Alignment:
Q  258 aaggaatgatgatgatgagtttagatctgaaaatgagtttttgtgaaggattggtggtggtgatgatgat 327  Q
    ||||||| ||| | ||| ||||||||| ||||||| ||||||||||||||||| || || ||||||||||    
T  44633136 aaggaataatggtaatgggtttagatcagaaaatgggtttttgtgaaggattgatgatgatgatgatgat 44633067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 310
Target Start/End: Original strand, 39270496 - 39270529
Alignment:
Q  277 tttagatctgaaaatgagtttttgtgaaggattg 310  Q
    |||||||| |||||||||||||||||||||||||    
T  39270496 tttagatcagaaaatgagtttttgtgaaggattg 39270529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 270 - 327
Target Start/End: Original strand, 16963069 - 16963126
Alignment:
Q  270 tgatgagtttagatctgaaaatgagtttttgtgaaggattggtggtggtgatgatgat 327  Q
    ||||| ||||||||  ||||||||||||||||||||||||| || || ||||||||||    
T  16963069 tgatgggtttagataagaaaatgagtttttgtgaaggattgatgatgatgatgatgat 16963126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 323
Target Start/End: Complemental strand, 51598359 - 51598306
Alignment:
Q  270 tgatgagtttagatctgaaaatgagtttttgtgaaggattggtggtggtgatga 323  Q
    ||||| ||||||||| ||||||||||||||||||| ||||| || || ||||||    
T  51598359 tgatgggtttagatcagaaaatgagtttttgtgaaagattgatgatgatgatga 51598306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 306
Target Start/End: Complemental strand, 702030 - 701994
Alignment:
Q  270 tgatgagtttagatctgaaaatgagtttttgtgaagg 306  Q
    ||||| ||||||||| |||||||||||||||||||||    
T  702030 tgatgggtttagatcagaaaatgagtttttgtgaagg 701994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 306
Target Start/End: Complemental strand, 770329 - 770293
Alignment:
Q  270 tgatgagtttagatctgaaaatgagtttttgtgaagg 306  Q
    ||||| ||||||||| |||||||||||||||||||||    
T  770329 tgatgggtttagatcagaaaatgagtttttgtgaagg 770293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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