View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0739_low_13 (Length: 412)

Name: NF0739_low_13
Description: NF0739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0739_low_13
NF0739_low_13
[»] chr8 (34 HSPs)
chr8 (11-410)||(5290518-5290917)
chr8 (264-410)||(5306178-5306324)
chr8 (246-410)||(15125430-15125594)
chr8 (265-410)||(11832713-11832858)
chr8 (247-405)||(5283259-5283417)
chr8 (264-388)||(5313413-5313537)
chr8 (266-387)||(14950092-14950213)
chr8 (11-64)||(5306411-5306465)
chr8 (11-57)||(14949681-14949728)
chr8 (61-99)||(8536153-8536191)
chr8 (59-188)||(28769343-28769484)
chr8 (59-99)||(8629034-8629074)
chr8 (106-158)||(11494130-11494182)
chr8 (59-99)||(14482127-14482167)
chr8 (59-99)||(14949813-14949853)
chr8 (59-99)||(31884519-31884559)
chr8 (73-132)||(44617856-44617918)
chr8 (11-64)||(5282931-5282985)
chr8 (59-101)||(11476990-11477032)
chr8 (59-97)||(12972781-12972819)
chr8 (59-89)||(30172754-30172784)
chr8 (194-231)||(1096612-1096649)
chr8 (66-99)||(1112785-1112818)
chr8 (67-132)||(42597334-42597404)
chr8 (59-95)||(3645925-3645961)
chr8 (59-95)||(6918956-6918992)
chr8 (67-99)||(10114423-10114455)
chr8 (59-99)||(11059793-11059833)
chr8 (67-99)||(13652148-13652180)
chr8 (67-99)||(13710791-13710823)
chr8 (71-99)||(26215433-26215461)
chr8 (59-99)||(26813910-26813950)
chr8 (59-99)||(35298583-35298623)
chr8 (59-95)||(35534970-35535006)
[»] chr6 (22 HSPs)
chr6 (264-410)||(31526770-31526916)
chr6 (59-99)||(31668790-31668830)
chr6 (59-132)||(10452427-10452505)
chr6 (59-132)||(29274296-29274374)
chr6 (63-185)||(2034453-2034579)
chr6 (67-99)||(4247739-4247771)
chr6 (59-99)||(29249399-29249439)
chr6 (67-99)||(31461611-31461643)
chr6 (59-98)||(8010282-8010321)
chr6 (11-53)||(31526641-31526684)
chr6 (67-133)||(725721-725786)
chr6 (67-96)||(4003708-4003737)
chr6 (62-99)||(33259744-33259781)
chr6 (59-99)||(1810405-1810445)
chr6 (67-95)||(2514635-2514663)
chr6 (59-99)||(2727961-2728001)
chr6 (59-99)||(3169350-3169390)
chr6 (59-99)||(21959653-21959693)
chr6 (63-99)||(29940725-29940761)
chr6 (59-95)||(32578059-32578095)
chr6 (63-99)||(33069631-33069667)
chr6 (67-99)||(33416318-33416350)
[»] chr4 (28 HSPs)
chr4 (59-189)||(23819015-23819156)
chr4 (59-188)||(22684525-22684661)
chr4 (59-99)||(2980576-2980616)
chr4 (59-99)||(4191664-4191704)
chr4 (61-99)||(47970245-47970283)
chr4 (59-132)||(54325104-54325182)
chr4 (59-140)||(55437345-55437429)
chr4 (106-161)||(969358-969413)
chr4 (67-158)||(4798600-4798696)
chr4 (59-132)||(30207638-30207715)
chr4 (67-132)||(40709448-40709517)
chr4 (67-122)||(26190173-26190230)
chr4 (70-99)||(24160926-24160955)
chr4 (70-99)||(25487650-25487679)
chr4 (59-130)||(44319875-44319950)
chr4 (59-99)||(486006-486046)
chr4 (67-99)||(4663801-4663833)
chr4 (59-95)||(9843775-9843811)
chr4 (67-99)||(18967507-18967539)
chr4 (59-99)||(19422343-19422383)
chr4 (62-98)||(25548210-25548246)
chr4 (67-95)||(31005953-31005981)
chr4 (59-99)||(36734818-36734858)
chr4 (61-97)||(41603498-41603534)
chr4 (187-227)||(44638141-44638181)
chr4 (67-99)||(51044564-51044596)
chr4 (59-99)||(51555972-51556012)
chr4 (66-98)||(54462204-54462236)
[»] chr5 (29 HSPs)
chr5 (59-144)||(11684348-11684436)
chr5 (60-99)||(7096232-7096271)
chr5 (59-99)||(13224354-13224394)
chr5 (59-99)||(20982240-20982280)
chr5 (59-132)||(12407728-12407805)
chr5 (59-99)||(26516223-26516263)
chr5 (59-99)||(29115318-29115358)
chr5 (67-99)||(29588813-29588845)
chr5 (59-132)||(32059656-32059733)
chr5 (59-189)||(32172578-32172720)
chr5 (62-144)||(35135714-35135804)
chr5 (60-98)||(10798510-10798548)
chr5 (67-132)||(16945050-16945118)
chr5 (133-187)||(18906353-18906407)
chr5 (59-132)||(19177404-19177482)
chr5 (124-189)||(28409368-28409433)
chr5 (67-100)||(31030232-31030265)
chr5 (58-95)||(38813202-38813239)
chr5 (59-100)||(40499779-40499820)
chr5 (67-104)||(42849897-42849934)
chr5 (59-91)||(2569815-2569847)
chr5 (59-99)||(10391278-10391318)
chr5 (67-99)||(14714944-14714976)
chr5 (59-99)||(18700327-18700367)
chr5 (59-99)||(31694443-31694483)
chr5 (106-158)||(32197704-32197756)
chr5 (59-99)||(38819680-38819720)
chr5 (67-99)||(39919751-39919783)
chr5 (71-99)||(42573884-42573912)
[»] chr7 (29 HSPs)
chr7 (73-189)||(39345422-39345538)
chr7 (67-129)||(33894556-33894622)
chr7 (59-99)||(7244627-7244667)
chr7 (68-132)||(24909603-24909667)
chr7 (59-99)||(45078218-45078258)
chr7 (59-127)||(45593791-45593864)
chr7 (59-99)||(46213728-46213768)
chr7 (67-121)||(941477-941532)
chr7 (60-99)||(24973870-24973909)
chr7 (61-99)||(3610845-3610883)
chr7 (67-132)||(5369758-5369826)
chr7 (59-132)||(9527157-9527235)
chr7 (59-100)||(5628670-5628711)
chr7 (67-132)||(27481361-27481431)
chr7 (67-99)||(2223081-2223113)
chr7 (59-99)||(3241366-3241406)
chr7 (67-99)||(5276157-5276189)
chr7 (67-99)||(5373158-5373190)
chr7 (119-171)||(12792519-12792571)
chr7 (67-99)||(22388009-22388041)
chr7 (67-99)||(25670690-25670722)
chr7 (67-99)||(27378932-27378964)
chr7 (59-95)||(27389308-27389344)
chr7 (59-99)||(27492720-27492760)
chr7 (67-99)||(35809009-35809041)
chr7 (136-188)||(39280983-39281035)
chr7 (59-99)||(47006973-47007013)
chr7 (63-95)||(47528042-47528074)
chr7 (59-99)||(49060465-49060505)
[»] chr2 (30 HSPs)
chr2 (59-144)||(33267571-33267661)
chr2 (59-132)||(29430681-29430758)
chr2 (67-132)||(10143105-10143175)
chr2 (124-189)||(29316778-29316843)
chr2 (59-132)||(37053519-37053597)
chr2 (122-174)||(1056371-1056423)
chr2 (59-99)||(33197344-33197384)
chr2 (67-132)||(35755569-35755639)
chr2 (67-99)||(41033055-41033087)
chr2 (59-130)||(17952770-17952846)
chr2 (59-97)||(9478224-9478262)
chr2 (61-99)||(13864577-13864615)
chr2 (66-100)||(30990473-30990507)
chr2 (70-99)||(5133708-5133737)
chr2 (67-132)||(18962105-18962175)
chr2 (124-156)||(680505-680537)
chr2 (59-99)||(2400081-2400121)
chr2 (59-99)||(10190204-10190244)
chr2 (59-99)||(11393471-11393511)
chr2 (67-99)||(11393760-11393792)
chr2 (59-99)||(11410132-11410172)
chr2 (67-99)||(11410421-11410453)
chr2 (67-99)||(15119922-15119954)
chr2 (71-99)||(15288711-15288739)
chr2 (67-95)||(25609729-25609757)
chr2 (59-95)||(26484193-26484229)
chr2 (67-99)||(26522729-26522761)
chr2 (59-99)||(31461363-31461403)
chr2 (67-99)||(34055006-34055038)
chr2 (67-99)||(38239656-38239688)
[»] scaffold0590 (1 HSPs)
scaffold0590 (59-99)||(1179-1219)
[»] scaffold0275 (1 HSPs)
scaffold0275 (59-99)||(2756-2796)
[»] chr3 (32 HSPs)
chr3 (59-99)||(41028956-41028996)
chr3 (72-132)||(20669562-20669622)
chr3 (59-99)||(24268260-24268300)
chr3 (133-189)||(37273145-37273201)
chr3 (59-99)||(43116533-43116573)
chr3 (55-131)||(49586984-49587064)
chr3 (59-98)||(16790462-16790501)
chr3 (61-100)||(24158606-24158645)
chr3 (59-98)||(48528503-48528542)
chr3 (62-132)||(8007762-8007837)
chr3 (59-129)||(27792797-27792872)
chr3 (61-94)||(11039425-11039458)
chr3 (67-132)||(20192673-20192743)
chr3 (68-121)||(23808308-23808366)
chr3 (58-99)||(24413608-24413649)
chr3 (59-132)||(38462206-38462284)
chr3 (59-99)||(905075-905115)
chr3 (67-99)||(1395604-1395636)
chr3 (73-189)||(2128261-2128382)
chr3 (59-99)||(16790193-16790233)
chr3 (59-99)||(20211026-20211066)
chr3 (59-127)||(22232751-22232824)
chr3 (59-106)||(27290996-27291044)
chr3 (59-99)||(33307685-33307725)
chr3 (67-99)||(35127476-35127508)
chr3 (67-99)||(42039092-42039124)
chr3 (59-99)||(44284163-44284203)
chr3 (59-99)||(44374749-44374789)
chr3 (59-99)||(51278262-51278302)
chr3 (67-99)||(52413226-52413258)
chr3 (59-99)||(52450157-52450197)
chr3 (71-99)||(54194456-54194484)
[»] chr1 (32 HSPs)
chr1 (61-99)||(13037791-13037829)
chr1 (59-99)||(24146364-24146404)
chr1 (59-99)||(35350546-35350586)
chr1 (67-132)||(15579416-15579485)
chr1 (124-183)||(34290238-34290297)
chr1 (59-189)||(44032002-44032144)
chr1 (59-132)||(45107548-45107625)
chr1 (66-132)||(15360826-15360897)
chr1 (67-97)||(39339856-39339886)
chr1 (65-94)||(488932-488961)
chr1 (70-99)||(2462903-2462932)
chr1 (67-119)||(5160342-5160397)
chr1 (65-106)||(6292424-6292465)
chr1 (133-182)||(12564509-12564558)
chr1 (59-148)||(23895261-23895355)
chr1 (59-132)||(30259554-30259632)
chr1 (133-174)||(37842373-37842414)
chr1 (62-99)||(41638177-41638214)
chr1 (59-92)||(42550166-42550199)
chr1 (59-132)||(44422626-44422702)
chr1 (67-132)||(45999355-45999425)
chr1 (59-96)||(46712298-46712335)
chr1 (59-92)||(50764486-50764519)
chr1 (59-99)||(870970-871010)
chr1 (59-99)||(4202234-4202274)
chr1 (193-221)||(4338766-4338794)
chr1 (67-95)||(6110273-6110301)
chr1 (59-99)||(6659628-6659668)
chr1 (124-188)||(14629970-14630034)
chr1 (67-99)||(38651514-38651546)
chr1 (67-99)||(42397696-42397728)
chr1 (59-95)||(48282058-48282094)
[»] scaffold0654 (1 HSPs)
scaffold0654 (59-99)||(6742-6782)
[»] scaffold0014 (1 HSPs)
scaffold0014 (59-99)||(116661-116701)
[»] scaffold0508 (1 HSPs)
scaffold0508 (59-99)||(9880-9920)
[»] scaffold0100 (1 HSPs)
scaffold0100 (59-99)||(42542-42582)


Alignment Details
Target: chr8 (Bit Score: 376; Significance: 0; HSPs: 34)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 11 - 410
Target Start/End: Original strand, 5290518 - 5290917
Alignment:
Q  11 cataggcaagtgtgccacctacattaacctgtttccattatagcaaagtatcatacaagtgcttatgtataagctatttctataacaaataaaatagtca 110  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5290518 cataggccagtgtgccaccaacattaacctgtttccattatagcaaagtatcatacaagtgcttatgtataagctatttctataacaaataaaatagtca 5290617  T
Q  111 aactgttttcatgtaagctatattcataagctatcttgaagaacttatagaatgaagctgaaaagaacttatggacatgctattaaataaactcaaatga 210  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5290618 aactgttttcatgtaagctatattcataagctatcgtgaaaaacttatagaatgaagctgaaaagaacttatggacatgctattaaataaactcaaatga 5290717  T
Q  211 gtcaattcaaacatgccttaaaactatgtttattactaaatctgttttataactaacttacagttccttgaatcttgggaatttctccaagtattgcata 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  5290718 gtcaattcaaacatgccttaaaactatgtttattactaaatctgttttataactaacttacagttccttgaatcttgggaatctctccaagtattgcata 5290817  T
Q  311 caaaagtgatgattttccagctccaactggtccacaaactgctattttctgtctccatttgatttctaaatttacatcccttaaggttggagacatagat 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  5290818 caaaagtgatgattttccagctccaactggtccacaaactgctattttctgtctccatttgatttctaaatttacatcctttaaggttggagacatagat 5290917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 264 - 410
Target Start/End: Complemental strand, 5306324 - 5306178
Alignment:
Q  264 taacttacagttccttgaatcttgggaatttctccaagtattgcatacaaaagtgatgattttccagctccaactggtccacaaactgctattttctgtc 363  Q
    |||||||||| ||||| |||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  5306324 taacttacagctccttaaatcttaggaatctctccaagtattgcatacaaaagtgatgattttccggctccaactggtccacaaactgctattttctgtc 5306225  T
Q  364 tccatttgatttctaaatttacatcccttaaggttggagacatagat 410  Q
     |||||||||||||| |||||||||  |||| |||||||||| ||||    
T  5306224 cccatttgatttctatatttacatctgttaaagttggagacaaagat 5306178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 246 - 410
Target Start/End: Complemental strand, 15125594 - 15125430
Alignment:
Q  246 ctaaatctgttttataactaacttacagttccttgaatcttgggaatttctccaagtattgcatacaaaagtgatgattttccagctccaactggtccac 345  Q
    |||||| |||| ||| | |||||||||||||||  |||||| || || ||||||||||||||||||||||| ||||||||||||| ||||||||||||||    
T  15125594 ctaaatatgttctattagtaacttacagttcctgaaatcttagggatctctccaagtattgcatacaaaagagatgattttccagatccaactggtccac 15125495  T
Q  346 aaactgctattttctgtctccatttgatttctaaatttacatcccttaaggttggagacatagat 410  Q
    ||||||| ||||||||||||||||| || |||||||| |||||  |||||| |||||||||||||    
T  15125494 aaactgcaattttctgtctccattttatctctaaattaacatcttttaaggctggagacatagat 15125430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 265 - 410
Target Start/End: Complemental strand, 11832858 - 11832713
Alignment:
Q  265 aacttacagttccttgaatcttgggaatttctccaagtattgcatacaaaagtgatgattttccagctccaactggtccacaaactgctattttctgtct 364  Q
    ||||||||||||||  |||||| ||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||     
T  11832858 aacttacagttcctgaaatctttggaatctctcctagtattgcatacaaaagagatgattttccagctccaactggtccacaaactgcaattttctgtcc 11832759  T
Q  365 ccatttgatttctaaatttacatcccttaaggttggagacatagat 410  Q
    |||  ||||||||| ||| ||||| ||||| |||||||||| ||||    
T  11832758 ccacctgatttctatattaacatctcttaaagttggagacacagat 11832713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 247 - 405
Target Start/End: Original strand, 5283259 - 5283417
Alignment:
Q  247 taaatctgttttataactaacttacagttccttgaatcttgggaatttctccaagtattgcatacaaaagtgatgattttccagctccaactggtccaca 346  Q
    ||||| |||| ||| | |||||||||||||||  |||||| ||||| ||||| ||||||| ||||||||| |||||||||||||||||||||||||||||    
T  5283259 taaatatgttctattagtaacttacagttcctgaaatctttggaatctctcctagtattgaatacaaaagagatgattttccagctccaactggtccaca 5283358  T
Q  347 aactgctattttctgtctccatttgatttctaaatttacatcccttaaggttggagaca 405  Q
    |||||| |||||||||| ||   ||||||||| ||| ||||| ||||| ||||||||||    
T  5283359 aactgcaattttctgtccccgcctgatttctatattaacatctcttaaagttggagaca 5283417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 264 - 388
Target Start/End: Complemental strand, 5313537 - 5313413
Alignment:
Q  264 taacttacagttccttgaatcttgggaatttctccaagtattgcatacaaaagtgatgattttccagctccaactggtccacaaactgctattttctgtc 363  Q
    |||||||||||||||  |||||| ||||| ||||||||||||||||||| ||| |||||||||||||||||||| ||||| |||||||||||||||||||    
T  5313537 taacttacagttcctgaaatcttaggaatctctccaagtattgcatacagaagagatgattttccagctccaacaggtccgcaaactgctattttctgtc 5313438  T
Q  364 tccatttgatttctaaatttacatc 388  Q
     |||||| || ||||| || |||||    
T  5313437 cccattttatctctaagttcacatc 5313413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 266 - 387
Target Start/End: Original strand, 14950092 - 14950213
Alignment:
Q  266 acttacagttccttgaatcttgggaatttctccaagtattgcatacaaaagtgatgattttccagctccaactggtccacaaactgctattttctgtctc 365  Q
    ||||||||||||||||||||||| ||| ||||| ||||||||||||||||| ||||||||||| | ||| |||| ||| |||||||| ||||| ||||||    
T  14950092 acttacagttccttgaatcttggaaatctctccgagtattgcatacaaaagagatgattttccggatcccactgctccgcaaactgcaattttgtgtctc 14950191  T
Q  366 catttgatttctaaatttacat 387  Q
    |||||||| |||||||| ||||    
T  14950192 catttgatatctaaattcacat 14950213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 11 - 64
Target Start/End: Complemental strand, 5306465 - 5306411
Alignment:
Q  11 cataggcaagtgtgccacctacattaacctg-tttccattatagcaaagtatcat 64  Q
    ||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||    
T  5306465 cataggcaagtgtgccacctacattaacctgttttccattatagtaaaatatcat 5306411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 14949681 - 14949728
Alignment:
Q  11 cataggcaagtgtgccacctacattaacctg-tttccattatagcaaa 57  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  14949681 cataggctagtgtgccacctacattaacctgttttccattatagcaaa 14949728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 99
Target Start/End: Complemental strand, 8536191 - 8536153
Alignment:
Q  61 tcatacaagtgcttatgtataagctatttctataacaaa 99  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  8536191 tcatataagtgcttatgtataagctatttctataacaaa 8536153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 59 - 188
Target Start/End: Complemental strand, 28769484 - 28769343
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttctataacaa---ataaaat--agtcaaactgttttcatgtaagctata-------ttcataagctatct 146  Q
    ||||||| || ||||||||||||||||||| |||||||||   |||||||  ||||||||| ||||| | |||||||||       |||||||||||| |    
T  28769484 tatcatataaatgcttatgtataagctattcctataacaaactataaaattaagtcaaactattttcttataagctataagctgttttcataagctattt 28769385  T
Q  147 tgaagaacttatagaatgaagctgaaaagaacttatggacat 188  Q
    || |||  |||| |||  |||||||||| |||||||||||||    
T  28769384 tggagagtttatggaaataagctgaaaacaacttatggacat 28769343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 8629034 - 8629074
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttctataacaaa 99  Q
    ||||||| |||||||||| ||||||||||||||||||||||    
T  8629034 tatcatataagtgcttatttataagctatttctataacaaa 8629074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 158
Target Start/End: Original strand, 11494130 - 11494182
Alignment:
Q  106 agtcaaactgttttcatgtaagctatattcataagctatcttgaagaacttat 158  Q
    ||||||||| ||||||| ||| |||| |||||||||||||||||||| |||||    
T  11494130 agtcaaacttttttcatataaactattttcataagctatcttgaagagcttat 11494182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 14482127 - 14482167
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttctataacaaa 99  Q
    ||||||| |||||||||||||||| ||||||||||||||||    
T  14482127 tatcatataagtgcttatgtataaactatttctataacaaa 14482167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 14949813 - 14949853
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttctataacaaa 99  Q
    |||||||||||| ||||||||||||||| ||||||||||||    
T  14949813 tatcatacaagttcttatgtataagctacttctataacaaa 14949853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 31884519 - 31884559
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttctataacaaa 99  Q
    |||||||||||||| |||||||||| |||||||||||||||    
T  31884519 tatcatacaagtgcatatgtataagttatttctataacaaa 31884559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 132
Target Start/End: Complemental strand, 44617918 - 44617856
Alignment:
Q  73 ttatgtataagctatttctataac---aaataaaatagtcaaactgttttcatgtaagctata 132  Q
    ||||||||||||||||||||||||   |||||||||||| | ||||||||||| |||| ||||    
T  44617918 ttatgtataagctatttctataactaaaaataaaatagttagactgttttcatataagatata 44617856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 11 - 64
Target Start/End: Original strand, 5282931 - 5282985
Alignment:
Q  11 cataggcaagtgtgccacctacattaacctgtt-tccattatagcaaagtatcat 64  Q
    |||||||||| || ||||||||||||||||||| |||||||||| ||| ||||||    
T  5282931 cataggcaagagttccacctacattaacctgttctccattatagtaaaatatcat 5282985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 59 - 101
Target Start/End: Complemental strand, 11477032 - 11476990
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttctataacaaata 101  Q
    ||||||| ||||||| ||||||||||||||||| |||||||||    
T  11477032 tatcatataagtgctaatgtataagctatttctgtaacaaata 11476990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 59 - 97
Target Start/End: Original strand, 12972781 - 12972819
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttctataaca 97  Q
    ||||||| |||||||||||||||||||||||| ||||||    
T  12972781 tatcatataagtgcttatgtataagctatttcaataaca 12972819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 59 - 89
Target Start/End: Complemental strand, 30172784 - 30172754
Alignment:
Q  59 tatcatacaagtgcttatgtataagctattt 89  Q
    |||||||||||||||||||||||||||||||    
T  30172784 tatcatacaagtgcttatgtataagctattt 30172754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 231
Target Start/End: Original strand, 1096612 - 1096649
Alignment:
Q  194 taaataaactcaaatgagtcaattcaaacatgccttaa 231  Q
    ||||||||||||||| ||||||| ||||||||||||||    
T  1096612 taaataaactcaaataagtcaatccaaacatgccttaa 1096649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 99
Target Start/End: Original strand, 1112785 - 1112818
Alignment:
Q  66 caagtgcttatgtataagctatttctataacaaa 99  Q
    |||||||||||||||| |||||||||||||||||    
T  1112785 caagtgcttatgtatatgctatttctataacaaa 1112818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 132
Target Start/End: Original strand, 42597334 - 42597404
Alignment:
Q  67 aagtgcttatgtataagctatttctataacaa---ataaaat--agtcaaactgttttcatgtaagctata 132  Q
    |||| |||||||||||||||||||||||||||   |||||||  ||| ||| |||||||||| ||||||||    
T  42597334 aagtacttatgtataagctatttctataacaaaagataaaataaagtaaaattgttttcatgcaagctata 42597404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 95
Target Start/End: Complemental strand, 3645961 - 3645925
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttctataa 95  Q
    ||||||| |||||||| ||||||||||||||||||||    
T  3645961 tatcatataagtgcttgtgtataagctatttctataa 3645925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 95
Target Start/End: Original strand, 6918956 - 6918992
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttctataa 95  Q
    ||||||| ||||||||||||||||||||||| |||||    
T  6918956 tatcatataagtgcttatgtataagctatttttataa 6918992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 99
Target Start/End: Original strand, 10114423 - 10114455
Alignment:
Q  67 aagtgcttatgtataagctatttctataacaaa 99  Q
    |||||||||||||||||||||||||||| ||||    
T  10114423 aagtgcttatgtataagctatttctatagcaaa 10114455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 99
Target Start/End: Complemental strand, 11059833 - 11059793
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttctataacaaa 99  Q
    |||||||||||| ||| |||||||||||| |||||||||||    
T  11059833 tatcatacaagtacttgtgtataagctatctctataacaaa 11059793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 99
Target Start/End: Original strand, 13652148 - 13652180
Alignment:
Q  67 aagtgcttatgtataagctatttctataacaaa 99  Q
    |||||||||||||||||||||||||||| ||||    
T  13652148 aagtgcttatgtataagctatttctatagcaaa 13652180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 99
Target Start/End: Original strand, 13710791 - 13710823
Alignment:
Q  67 aagtgcttatgtataagctatttctataacaaa 99  Q
    |||||||||||||||||||||||||||| ||||    
T  13710791 aagtgcttatgtataagctatttctatagcaaa 13710823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 99
Target Start/End: Original strand, 26215433 - 26215461
Alignment:
Q  71 gcttatgtataagctatttctataacaaa 99  Q
    |||||||||||||||||||||||||||||    
T  26215433 gcttatgtataagctatttctataacaaa 26215461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 99
Target Start/End: Complemental strand, 26813950 - 26813910
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttctataacaaa 99  Q
    ||||||| ||||||||||||||||  |||||||||||||||    
T  26813950 tatcatataagtgcttatgtataaattatttctataacaaa 26813910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 99
Target Start/End: Complemental strand, 35298623 - 35298583
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttctataacaaa 99  Q
    ||||||| ||||||||||||||||||||||||  |||||||    
T  35298623 tatcatataagtgcttatgtataagctatttcagtaacaaa 35298583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 95
Target Start/End: Complemental strand, 35535006 - 35534970
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttctataa 95  Q
    ||||||| |||||||||| ||||||||||||||||||    
T  35535006 tatcatataagtgcttatatataagctatttctataa 35534970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 8e-37; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 264 - 410
Target Start/End: Original strand, 31526770 - 31526916
Alignment:
Q  264 taacttacagttccttgaatcttgggaatttctccaagtattgcatacaaaagtgatgattttccagctccaactggtccacaaactgctattttctgtc 363  Q
    |||||||||||||||||||| || ||||| ||||| ||||||||||||| ||| || ||||||||||||||||| |||||||||||||||||||||||||    
T  31526770 taacttacagttccttgaatatttggaatctctccgagtattgcatacagaagagacgattttccagctccaaccggtccacaaactgctattttctgtc 31526869  T
Q  364 tccatttgatttctaaatttacatcccttaaggttggagacatagat 410  Q
     || ||| ||||||||||| |||||  |||| ||||| |||| ||||    
T  31526870 cccgttttatttctaaattaacatctgttaaagttggggacacagat 31526916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 59 - 99
Target Start/End: Complemental strand, 31668830 - 31668790
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttctataacaaa 99  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  31668830 tatcatataagtgcttatgtataagctatttctataacaaa 31668790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 59 - 132
Target Start/End: Complemental strand, 10452505 - 10452427
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttctataacaa---ataaaat--agtcaaactgttttcatgtaagctata 132  Q
    |||||||  |||||||||||||||||||||||||||||||   |||||||  | ||||||| ||||||| |||||||||    
T  10452505 tatcatatcagtgcttatgtataagctatttctataacaaaatataaaataaaatcaaactattttcatataagctata 10452427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 59 - 132
Target Start/End: Complemental strand, 29274374 - 29274296
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttctataacaa---ataaaat--agtcaaactgttttcatgtaagctata 132  Q
    ||||||| || ||||||||||||||||||||||||| |||   |||||||  ||||||| ||||||||| |||||||||    
T  29274374 tatcatagaaatgcttatgtataagctatttctatagcaaaagataaaataaagtcaaattgttttcatataagctata 29274296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 185
Target Start/End: Complemental strand, 2034579 - 2034453
Alignment:
Q  63 atacaagtgcttatgtataagctatttctataacaa--ataaaat--agtcaaactgttttcatgtaagctatattcataagctatcttgaagaacttat 158  Q
    ||||||||||||||||||||||| ||| || |||||  |||||||  |||||||||  |||||| |||||| | ||||||||||| | || ||| ||||     
T  2034579 atacaagtgcttatgtataagctgtttttacaacaaagataaaataaagtcaaactactttcatataagcttttttcataagctaacatgtagagcttaa 2034480  T
Q  159 agaatgaagctgaaaagaacttatgga 185  Q
     |||  |||||||||| | ||||||||    
T  2034479 tgaaataagctgaaaacagcttatgga 2034453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 99
Target Start/End: Complemental strand, 4247771 - 4247739
Alignment:
Q  67 aagtgcttatgtataagctatttctataacaaa 99  Q
    |||||||||||||||||||||||||||||||||    
T  4247771 aagtgcttatgtataagctatttctataacaaa 4247739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 29249399 - 29249439
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttctataacaaa 99  Q
    ||||||| |||||||||||||| ||||||||||||||||||    
T  29249399 tatcatataagtgcttatgtatcagctatttctataacaaa 29249439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 99
Target Start/End: Original strand, 31461611 - 31461643
Alignment:
Q  67 aagtgcttatgtataagctatttctataacaaa 99  Q
    |||||||||||||||||||||||||||||||||    
T  31461611 aagtgcttatgtataagctatttctataacaaa 31461643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 59 - 98
Target Start/End: Original strand, 8010282 - 8010321
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttctataacaa 98  Q
    ||||||| ||||||||| ||||||||||||||||||||||    
T  8010282 tatcatataagtgcttaggtataagctatttctataacaa 8010321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 11 - 53
Target Start/End: Original strand, 31526641 - 31526684
Alignment:
Q  11 cataggcaagtgtgccacctacattaacctgtttc-cattatag 53  Q
    |||||||||| |||||||||||||||||||||||| ||||||||    
T  31526641 cataggcaagagtgccacctacattaacctgtttcgcattatag 31526684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 67 - 133
Target Start/End: Complemental strand, 725786 - 725721
Alignment:
Q  67 aagtgcttatgtataagctatttctataacaaataaaatagtcaaactgttttcatgtaagctatat 133  Q
    |||||||||||||| ||||||||||||| | || |||| |||||||||||||| || ||| ||||||    
T  725786 aagtgcttatgtattagctatttctatagctaa-aaaaaagtcaaactgtttttatataaactatat 725721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 96
Target Start/End: Complemental strand, 4003737 - 4003708
Alignment:
Q  67 aagtgcttatgtataagctatttctataac 96  Q
    ||||||||||||||||||||||||||||||    
T  4003737 aagtgcttatgtataagctatttctataac 4003708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 99
Target Start/End: Original strand, 33259744 - 33259781
Alignment:
Q  62 catacaagtgcttatgtataagctatttctataacaaa 99  Q
    |||| ||||||||||||||||||||||| |||||||||    
T  33259744 catataagtgcttatgtataagctatttttataacaaa 33259781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 99
Target Start/End: Complemental strand, 1810445 - 1810405
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttctataacaaa 99  Q
    ||||||| ||||||||||| | |||||||||||||||||||    
T  1810445 tatcatataagtgcttatgcaaaagctatttctataacaaa 1810405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 95
Target Start/End: Original strand, 2514635 - 2514663
Alignment:
Q  67 aagtgcttatgtataagctatttctataa 95  Q
    |||||||||||||||||||||||||||||    
T  2514635 aagtgcttatgtataagctatttctataa 2514663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 99
Target Start/End: Complemental strand, 2728001 - 2727961
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttctataacaaa 99  Q
    ||||||| |||||||||||||||||||  ||||||||||||    
T  2728001 tatcatataagtgcttatgtataagctgcttctataacaaa 2727961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 99
Target Start/End: Complemental strand, 3169390 - 3169350
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttctataacaaa 99  Q
    ||||||| |||||||||||| ||| ||||||||||||||||    
T  3169390 tatcatataagtgcttatgtgtaacctatttctataacaaa 3169350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 21959653 - 21959693
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttctataacaaa 99  Q
    ||||||| ||||||||| |||||||||||||| ||||||||    
T  21959653 tatcatagaagtgcttaagtataagctatttccataacaaa 21959693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 63 - 99
Target Start/End: Original strand, 29940725 - 29940761
Alignment:
Q  63 atacaagtgcttatgtataagctatttctataacaaa 99  Q
    ||||||||||||| ||||||||| |||||||||||||    
T  29940725 atacaagtgcttaagtataagctttttctataacaaa 29940761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 95
Target Start/End: Complemental strand, 32578095 - 32578059
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttctataa 95  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  32578095 tatcatataagtgcttatgtgtaagctatttctataa 32578059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 63 - 99
Target Start/End: Complemental strand, 33069667 - 33069631
Alignment:
Q  63 atacaagtgcttatgtataagctatttctataacaaa 99  Q
    |||||| | ||||||||||||||||||||||||||||    
T  33069667 atacaaattcttatgtataagctatttctataacaaa 33069631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 99
Target Start/End: Original strand, 33416318 - 33416350
Alignment:
Q  67 aagtgcttatgtataagctatttctataacaaa 99  Q
    ||||||||||||||||||||||| |||||||||    
T  33416318 aagtgcttatgtataagctatttttataacaaa 33416350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 59 - 189
Target Start/End: Original strand, 23819015 - 23819156
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttctataacaaataaaa----tagtcaaactgttttcatgtaagctata-------ttcataagctatctt 147  Q
    ||||||||||||| ||||||||||| |||||| |||||||||| ||    |||||||||||||||||| |||| ||||       |||||||||||||||    
T  23819015 tatcatacaagtgtttatgtataagttatttccataacaaatataaaatgtagtcaaactgttttcatataagttataacatgttttcataagctatctt 23819114  T
Q  148 gaagaacttatagaatgaagctgaaaagaacttatggacatg 189  Q
    ||||| |||||||||  ||| |||||| ||||||||||||||    
T  23819115 gaagagcttatagaaataagatgaaaacaacttatggacatg 23819156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 59 - 188
Target Start/End: Complemental strand, 22684661 - 22684525
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttctataacaaa---taaaat--agtcaaactgttttcatgtaagctatattcataagc--tatcttgaag 151  Q
    ||||||| || ||||| ||||||||||||||||||||||||   ||||||  ||||||| ||||||||| |||||| |  ||||||||  ||||||||||    
T  22684661 tatcatataaatgcttctgtataagctatttctataacaaacggtaaaataaagtcaaattgttttcatataagctgttctcataagctatatcttgaag 22684562  T
Q  152 aacttatagaatgaagctgaaaagaacttatggacat 188  Q
    | |||| ||||  |||||||||| | |||||||||||    
T  22684561 agcttaaagaaataagctgaaaacagcttatggacat 22684525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 59 - 99
Target Start/End: Complemental strand, 2980616 - 2980576
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttctataacaaa 99  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  2980616 tatcatataagtgcttatgtataagctatttctataacaaa 2980576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 4191664 - 4191704
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttctataacaaa 99  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  4191664 tatcatataagtgcttatgtataagctatttctataacaaa 4191704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 99
Target Start/End: Original strand, 47970245 - 47970283
Alignment:
Q  61 tcatacaagtgcttatgtataagctatttctataacaaa 99  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  47970245 tcatataagtgcttatgtataagctatttctataacaaa 47970283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 59 - 132
Target Start/End: Complemental strand, 54325182 - 54325104
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttctataacaaa---taaaata--gtcaaactgttttcatgtaagctata 132  Q
    ||||||| |||||||| ||||||| |||||||||| |||||   |||||||  |||||||||||||||| |||||||||    
T  54325182 tatcatataagtgcttgtgtataaactatttctattacaaaagataaaataaagtcaaactgttttcatataagctata 54325104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 59 - 140
Target Start/End: Complemental strand, 55437429 - 55437345
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttctataacaa-ataaaat--agtcaaactgttttcatgtaagctatattcataag 140  Q
    ||||||| ||| | |||| ||||||||||||||||||||| |||||||  ||||||| | ||||||| |||||||| ||||||||    
T  55437429 tatcatataagcgattatctataagctatttctataacaatataaaataaagtcaaattattttcatataagctattttcataag 55437345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 106 - 161
Target Start/End: Complemental strand, 969413 - 969358
Alignment:
Q  106 agtcaaactgttttcatgtaagctatattcataagctatcttgaagaacttataga 161  Q
    ||||||| ||||||||| |||||||| ||||| ||||||| || ||||||||||||    
T  969413 agtcaaattgttttcatataagctattttcatgagctatcgtggagaacttataga 969358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 67 - 158
Target Start/End: Complemental strand, 4798696 - 4798600
Alignment:
Q  67 aagtgcttatgtataagctatttctataacaa---ataaaat--agtcaaactgttttcatgtaagctatattcataagctatcttgaagaacttat 158  Q
    |||||||||||||||||||||||||||| |||   |||||||  |||| || ||||||| || ||| | | |||||||||||||||| ||| |||||    
T  4798696 aagtgcttatgtataagctatttctatatcaaaagataaaataaagtctaaatgttttcctgcaagttgttttcataagctatcttggagagcttat 4798600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 59 - 132
Target Start/End: Complemental strand, 30207715 - 30207638
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttctataac---aaataaaat-agtcaaactgttttcatgtaagctata 132  Q
    ||||||| ||||||||||||||| | || |||||||||   ||||||||| | ||||||||||||||| |||||||||    
T  30207715 tatcatataagtgcttatgtatatgttagttctataacaaaaaataaaataaatcaaactgttttcatataagctata 30207638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 67 - 132
Target Start/End: Complemental strand, 40709517 - 40709448
Alignment:
Q  67 aagtgcttatgtataagctatttctataacaa---ataaaatagtcaaactgttt-tcatgtaagctata 132  Q
    |||||||||| |||||||| ||||||||||||   |||||||||||||||| ||| | ||||||||||||    
T  40709517 aagtgcttatttataagctgtttctataacaaaagataaaatagtcaaactttttcttatgtaagctata 40709448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 67 - 122
Target Start/End: Complemental strand, 26190230 - 26190173
Alignment:
Q  67 aagtgcttatgtataagctatttctataaca--aataaaatagtcaaactgttttcat 122  Q
    ||||||||||||||| ||||||| |||||||  ||||||| ||||||||| |||||||    
T  26190230 aagtgcttatgtatatgctatttttataacaacaataaaaaagtcaaactcttttcat 26190173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 99
Target Start/End: Original strand, 24160926 - 24160955
Alignment:
Q  70 tgcttatgtataagctatttctataacaaa 99  Q
    ||||||||||||||||||||||||||||||    
T  24160926 tgcttatgtataagctatttctataacaaa 24160955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 99
Target Start/End: Complemental strand, 25487679 - 25487650
Alignment:
Q  70 tgcttatgtataagctatttctataacaaa 99  Q
    ||||||||||||||||||||||||||||||    
T  25487679 tgcttatgtataagctatttctataacaaa 25487650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 130
Target Start/End: Original strand, 44319875 - 44319950
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttctataacaa--ataaaat--agtcaaactgttttcatgtaagcta 130  Q
    ||||||| ||||||| |||||||| |||||||||||| ||  |||||||  |||| |||||||||||| |||||||    
T  44319875 tatcatataagtgctcatgtataaactatttctataaaaaagataaaataaagtcgaactgttttcatataagcta 44319950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 486006 - 486046
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttctataacaaa 99  Q
    ||||||| ||||||||||||||| |||||||||| ||||||    
T  486006 tatcataaaagtgcttatgtatatgctatttctaaaacaaa 486046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 99
Target Start/End: Complemental strand, 4663833 - 4663801
Alignment:
Q  67 aagtgcttatgtataagctatttctataacaaa 99  Q
    ||||||||||||||||| |||||||||||||||    
T  4663833 aagtgcttatgtataagttatttctataacaaa 4663801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 95
Target Start/End: Complemental strand, 9843811 - 9843775
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttctataa 95  Q
    ||||||| || ||||||||||||||||||||||||||    
T  9843811 tatcatataactgcttatgtataagctatttctataa 9843775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 99
Target Start/End: Complemental strand, 18967539 - 18967507
Alignment:
Q  67 aagtgcttatgtataagctatttctataacaaa 99  Q
    |||||||||||||||||||||||||||| ||||    
T  18967539 aagtgcttatgtataagctatttctatatcaaa 18967507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 19422343 - 19422383
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttctataacaaa 99  Q
    ||||||| || |||||||||||||| |||||||||||||||    
T  19422343 tatcatataaatgcttatgtataagttatttctataacaaa 19422383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 62 - 98
Target Start/End: Complemental strand, 25548246 - 25548210
Alignment:
Q  62 catacaagtgcttatgtataagctatttctataacaa 98  Q
    |||| ||||||||||| ||||||||||||||||||||    
T  25548246 cataaaagtgcttatgcataagctatttctataacaa 25548210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 95
Target Start/End: Original strand, 31005953 - 31005981
Alignment:
Q  67 aagtgcttatgtataagctatttctataa 95  Q
    |||||||||||||||||||||||||||||    
T  31005953 aagtgcttatgtataagctatttctataa 31005981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 36734818 - 36734858
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttctataacaaa 99  Q
    ||||||| |||||||||||||||| || |||||||||||||    
T  36734818 tatcatataagtgcttatgtataatctctttctataacaaa 36734858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 61 - 97
Target Start/End: Complemental strand, 41603534 - 41603498
Alignment:
Q  61 tcatacaagtgcttatgtataagctatttctataaca 97  Q
    ||||| ||||||||||||||||||||||| |||||||    
T  41603534 tcatataagtgcttatgtataagctatttatataaca 41603498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 187 - 227
Target Start/End: Complemental strand, 44638181 - 44638141
Alignment:
Q  187 atgctattaaataaactcaaatgagtcaattcaaacatgcc 227  Q
    |||||| ||||||||||||||| ||||||| ||||||||||    
T  44638181 atgctagtaaataaactcaaataagtcaatccaaacatgcc 44638141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 99
Target Start/End: Complemental strand, 51044596 - 51044564
Alignment:
Q  67 aagtgcttatgtataagctatttctataacaaa 99  Q
    ||||| |||||||||||||||||||||||||||    
T  51044596 aagtgtttatgtataagctatttctataacaaa 51044564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 99
Target Start/End: Complemental strand, 51556012 - 51555972
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttctataacaaa 99  Q
    ||||||| ||||||||||||||||||||||  |||||||||    
T  51556012 tatcatataagtgcttatgtataagctattattataacaaa 51555972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 66 - 98
Target Start/End: Complemental strand, 54462236 - 54462204
Alignment:
Q  66 caagtgcttatgtataagctatttctataacaa 98  Q
    |||||||||||||| ||||||||||||||||||    
T  54462236 caagtgcttatgtaaaagctatttctataacaa 54462204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 59 - 144
Target Start/End: Original strand, 11684348 - 11684436
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttctataacaaa---taaaatagtcaaactgttttcatgtaagctatattcataagctat 144  Q
    ||||||| ||||||| ||||||||||||||| |||||||||   ||||||||| ||||||||||||| |||||||| ||||||||||||    
T  11684348 tatcatataagtgctaatgtataagctatttttataacaaaatataaaatagtgaaactgttttcatataagctattttcataagctat 11684436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 60 - 99
Target Start/End: Complemental strand, 7096271 - 7096232
Alignment:
Q  60 atcatacaagtgcttatgtataagctatttctataacaaa 99  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  7096271 atcatacaagtgcttatgtataagctatttctataacaaa 7096232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 13224354 - 13224394
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttctataacaaa 99  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  13224354 tatcatagaagtgcttatgtataagctatttctataacaaa 13224394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 59 - 99
Target Start/End: Complemental strand, 20982280 - 20982240
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttctataacaaa 99  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  20982280 tatcatataagtgcttatgtataagctatttctataacaaa 20982240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 59 - 132
Target Start/End: Complemental strand, 12407805 - 12407728
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttctataacaa---ataaaat--agtcaaactgttttcatgtaagctata 132  Q
    ||||||||||||| ||||||||||||||||||||||||||   |||||||  ||| || ||||||||||||||| ||||    
T  12407805 tatcatacaagtg-ttatgtataagctatttctataacaaaagataaaataaagtaaatctgttttcatgtaagttata 12407728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 26516223 - 26516263
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttctataacaaa 99  Q
    ||||||| |||||||||||||||||||||||||| ||||||    
T  26516223 tatcatataagtgcttatgtataagctatttctaaaacaaa 26516263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 99
Target Start/End: Complemental strand, 29115358 - 29115318
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttctataacaaa 99  Q
    ||||||| |||||||||||||||||||||||||| ||||||    
T  29115358 tatcataaaagtgcttatgtataagctatttctacaacaaa 29115318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 99
Target Start/End: Original strand, 29588813 - 29588845
Alignment:
Q  67 aagtgcttatgtataagctatttctataacaaa 99  Q
    |||||||||||||||||||||||||||||||||    
T  29588813 aagtgcttatgtataagctatttctataacaaa 29588845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 59 - 132
Target Start/End: Complemental strand, 32059733 - 32059656
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttctataacaaa--taaaata--gtcaaactgttttcatgtaagctata 132  Q
    ||||||| ||||||||||||||||||| ||| | |||| ||  |||||||  |||||||||||||||| |||||||||    
T  32059733 tatcatataagtgcttatgtataagctgtttttgtaactaagataaaataaagtcaaactgttttcatataagctata 32059656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 59 - 189
Target Start/End: Original strand, 32172578 - 32172720
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttctataacaa---ataaaat--agtcaaactgttttcatgtaagctata-------ttcataagctatct 146  Q
    ||||||||||| |||||||||||| ||||||||| |||||   |||||||  ||||||  ||||| ||| |||||||||       |||||||||||||     
T  32172578 tatcatacaagagcttatgtataaactatttctacaacaaaagataaaatgaagtcaagttgtttacatataagctataagctgttttcataagctatca 32172677  T
Q  147 tgaagaacttatagaatgaagctgaaaagaacttatggacatg 189  Q
    ||||||||| || |||  ||||||||||   ||||||||||||    
T  32172678 tgaagaactaatggaaataagctgaaaatggcttatggacatg 32172720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 62 - 144
Target Start/End: Complemental strand, 35135804 - 35135714
Alignment:
Q  62 catacaagtgcttatgtataagctatttctataacaa---ataaaat--agtcaaactgttttcatgtaagctata---ttcataagctat 144  Q
    |||| ||||| ||||||||||| ||||||||||||||   |||||||  ||||||||| ||||||| |||||||||   ||||||||||||    
T  35135804 catataagtgtttatgtataagatatttctataacaaaagataaaataaagtcaaactattttcatataagctataagtttcataagctat 35135714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 60 - 98
Target Start/End: Complemental strand, 10798548 - 10798510
Alignment:
Q  60 atcatacaagtgcttatgtataagctatttctataacaa 98  Q
    |||||| ||||||||||||||||||||||||||| ||||    
T  10798548 atcatataagtgcttatgtataagctatttctatgacaa 10798510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 67 - 132
Target Start/End: Complemental strand, 16945118 - 16945050
Alignment:
Q  67 aagtgcttatgtataagctatttctataacaa---ataaaatagtcaaactgttttcatgtaagctata 132  Q
    |||||||||||||||||||||||||| || ||   |||||||||| ||| |||||||||  ||||||||    
T  16945118 aagtgcttatgtataagctatttctacaagaaaagataaaatagttaaattgttttcatagaagctata 16945050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 133 - 187
Target Start/End: Original strand, 18906353 - 18906407
Alignment:
Q  133 ttcataagctatcttgaagaacttatagaatgaagctgaaaagaacttatggaca 187  Q
    |||||||||||||||||| | ||||| |||  |||||||||| ||||||||||||    
T  18906353 ttcataagctatcttgaaaagcttatcgaaataagctgaaaacaacttatggaca 18906407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 132
Target Start/End: Original strand, 19177404 - 19177482
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttctataacaaa---taaaat--agtcaaactgttttcatgtaagctata 132  Q
    ||||||| |||||||||||||||| ||||||||| |||| |   ||||||  |||| |||||||||||| |||||||||    
T  19177404 tatcatataagtgcttatgtataaactatttctacaacagaagataaaattaagtctaactgttttcatataagctata 19177482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 189
Target Start/End: Complemental strand, 28409433 - 28409368
Alignment:
Q  124 taagctatattcataagctatcttgaagaacttatagaatgaagctgaaaagaacttatggacatg 189  Q
    |||||||| || ||||||||||  | ||||||| |||||  |||||||||| ||||||||||||||    
T  28409433 taagctatttttataagctatcccggagaacttgtagaaataagctgaaaataacttatggacatg 28409368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 100
Target Start/End: Complemental strand, 31030265 - 31030232
Alignment:
Q  67 aagtgcttatgtataagctatttctataacaaat 100  Q
    ||||||||||||||||||||||| ||||||||||    
T  31030265 aagtgcttatgtataagctatttttataacaaat 31030232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 95
Target Start/End: Complemental strand, 38813239 - 38813202
Alignment:
Q  58 gtatcatacaagtgcttatgtataagctatttctataa 95  Q
    ||||||||||||||||||||||||| ||||||| ||||    
T  38813239 gtatcatacaagtgcttatgtataaactatttcaataa 38813202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 100
Target Start/End: Complemental strand, 40499820 - 40499779
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttctataacaaat 100  Q
    ||||||| ||||||||||||| ||| ||||||||||||||||    
T  40499820 tatcatataagtgcttatgtacaagttatttctataacaaat 40499779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 104
Target Start/End: Original strand, 42849897 - 42849934
Alignment:
Q  67 aagtgcttatgtataagctatttctataacaaataaaa 104  Q
    ||||||||||||||||||||||||||||| | ||||||    
T  42849897 aagtgcttatgtataagctatttctataatatataaaa 42849934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 91
Target Start/End: Complemental strand, 2569847 - 2569815
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttct 91  Q
    ||||||| |||||||||||||||||||||||||    
T  2569847 tatcatataagtgcttatgtataagctatttct 2569815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 10391278 - 10391318
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttctataacaaa 99  Q
    ||||||| ||||||||| ||||||||||||| |||||||||    
T  10391278 tatcatataagtgcttacgtataagctatttttataacaaa 10391318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 99
Target Start/End: Complemental strand, 14714976 - 14714944
Alignment:
Q  67 aagtgcttatgtataagctatttctataacaaa 99  Q
    ||||| |||||||||||||||||||||||||||    
T  14714976 aagtgattatgtataagctatttctataacaaa 14714944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 18700327 - 18700367
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttctataacaaa 99  Q
    ||||||||| |||||||||||||||||| ||||||| ||||    
T  18700327 tatcatacaggtgcttatgtataagctaattctatatcaaa 18700367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 31694443 - 31694483
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttctataacaaa 99  Q
    ||||||| ||||||||||| ||||||||| |||||||||||    
T  31694443 tatcatataagtgcttatgaataagctatgtctataacaaa 31694483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 106 - 158
Target Start/End: Original strand, 32197704 - 32197756
Alignment:
Q  106 agtcaaactgttttcatgtaagctatattcataagctatcttgaagaacttat 158  Q
    ||||||||| ||||||| |||||| | | ||||||||||| ||||||||||||    
T  32197704 agtcaaactattttcatataagctgtttccataagctatcctgaagaacttat 32197756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 99
Target Start/End: Complemental strand, 38819720 - 38819680
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttctataacaaa 99  Q
    ||||||| ||| ||||||||||| |||||||||||||||||    
T  38819720 tatcatataagggcttatgtatacgctatttctataacaaa 38819680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 99
Target Start/End: Complemental strand, 39919783 - 39919751
Alignment:
Q  67 aagtgcttatgtataagctatttctataacaaa 99  Q
    |||||||||||||||||||| ||||||||||||    
T  39919783 aagtgcttatgtataagctaattctataacaaa 39919751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 99
Target Start/End: Complemental strand, 42573912 - 42573884
Alignment:
Q  71 gcttatgtataagctatttctataacaaa 99  Q
    |||||||||||||||||||||||||||||    
T  42573912 gcttatgtataagctatttctataacaaa 42573884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 73 - 189
Target Start/End: Original strand, 39345422 - 39345538
Alignment:
Q  73 ttatgtataagctatttctataacaaataaaatagtcaaactgttttcatgtaagctatattcataagctatcttgaagaacttatagaatgaagctgaa 172  Q
    ||||||||||||||||||  |||||||  | | ||||||||||||||||| |||||| | |||| |||||||| ||| || ||||| |||  ||||||||    
T  39345422 ttatgtataagctatttcagtaacaaaagatagagtcaaactgttttcatataagctgttttcaaaagctatcctgacgaccttatggaaataagctgaa 39345521  T
Q  173 aagaacttatggacatg 189  Q
    |  ||||||||||||||    
T  39345522 agcaacttatggacatg 39345538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 67 - 129
Target Start/End: Original strand, 33894556 - 33894622
Alignment:
Q  67 aagtgcttatgtataagctatttctataacaa---ataaaat-agtcaaactgttttcatgtaagct 129  Q
    ||||||||||||||||||||||||||||||||   ||||||| ||||||||||||||||| ||||||    
T  33894556 aagtgcttatgtataagctatttctataacaaaagataaaataagtcaaactgttttcatataagct 33894622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 7244627 - 7244667
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttctataacaaa 99  Q
    ||||||| |||||||||||||||||||||||||||| ||||    
T  7244627 tatcatataagtgcttatgtataagctatttctatatcaaa 7244667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 132
Target Start/End: Original strand, 24909603 - 24909667
Alignment:
Q  68 agtgcttatgtataagctatttctataacaaataaaatagtcaaactgttttcatgtaagctata 132  Q
    |||||||||||||||||||||||| ||||||| |  | ||||||| | ||||||| |||||||||    
T  24909603 agtgcttatgtataagctatttctttaacaaaaagtaaagtcaaattattttcatataagctata 24909667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 45078218 - 45078258
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttctataacaaa 99  Q
    ||||||| ||||||||||||||||||||||| |||||||||    
T  45078218 tatcatataagtgcttatgtataagctatttttataacaaa 45078258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 127
Target Start/End: Complemental strand, 45593864 - 45593791
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttctataacaa---ataaaat--agtcaaactgttttcatgtaag 127  Q
    ||||||| || |||||||||||||||||||||| ||||||   |||||||  ||||||||||||||||| ||||    
T  45593864 tatcatataaatgcttatgtataagctatttctgtaacaaaacataaaataaagtcaaactgttttcatataag 45593791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 46213728 - 46213768
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttctataacaaa 99  Q
    ||||||| ||||||||||||| |||||||||||||||||||    
T  46213728 tatcatataagtgcttatgtaaaagctatttctataacaaa 46213768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 67 - 121
Target Start/End: Original strand, 941477 - 941532
Alignment:
Q  67 aagtgcttatgtataagctatttctataaca-aataaaatagtcaaactgttttca 121  Q
    |||||| ||| |||||||||||||||||||| ||| ||||||||||| ||||||||    
T  941477 aagtgcatatatataagctatttctataacacaattaaatagtcaaattgttttca 941532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 60 - 99
Target Start/End: Original strand, 24973870 - 24973909
Alignment:
Q  60 atcatacaagtgcttatgtataagctatttctataacaaa 99  Q
    |||||| ||||||||||||| |||||||||||||||||||    
T  24973870 atcatataagtgcttatgtaaaagctatttctataacaaa 24973909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 61 - 99
Target Start/End: Complemental strand, 3610883 - 3610845
Alignment:
Q  61 tcatacaagtgcttatgtataagctatttctataacaaa 99  Q
    ||||| |||||||||||||||||||||||||| ||||||    
T  3610883 tcatataagtgcttatgtataagctatttctacaacaaa 3610845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 67 - 132
Target Start/End: Complemental strand, 5369826 - 5369758
Alignment:
Q  67 aagtgcttatgtataagctatttctataacaaa---taaaatagtcaaactgttttcatgtaagctata 132  Q
    |||||||||||||||||||| |||||||| |||   ||| | ||||||||||||||||| || ||||||    
T  5369826 aagtgcttatgtataagctaattctataaaaaaaattaataaagtcaaactgttttcatatatgctata 5369758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 59 - 132
Target Start/End: Complemental strand, 9527235 - 9527157
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttctataacaa-----ataaaatagtcaaactgttttcatgtaagctata 132  Q
    |||||||||||||||||| |||| ||||| ||||||||||     |||| | ||||||||||||||||| ||| |||||    
T  9527235 tatcatacaagtgcttatatatacgctatatctataacaaaagatataataaagtcaaactgttttcatataaactata 9527157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 100
Target Start/End: Complemental strand, 5628711 - 5628670
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttctataacaaat 100  Q
    ||||||||||| ||||||| ||||||||||| ||||||||||    
T  5628711 tatcatacaagggcttatgcataagctatttttataacaaat 5628670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 132
Target Start/End: Complemental strand, 27481431 - 27481361
Alignment:
Q  67 aagtgcttatgtataagctatttctataacaa---ataaaa--tagtcaaactgttttcatgtaagctata 132  Q
    ||||| ||||||||||||||||||||||||||   ||||||   ||||||||||||| ||| |||||||||    
T  27481431 aagtgtttatgtataagctatttctataacaaaggataaaacgaagtcaaactgtttccatataagctata 27481361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 99
Target Start/End: Original strand, 2223081 - 2223113
Alignment:
Q  67 aagtgcttatgtataagctatttctataacaaa 99  Q
    ||||| |||||||||||||||||||||||||||    
T  2223081 aagtgtttatgtataagctatttctataacaaa 2223113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 3241366 - 3241406
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttctataacaaa 99  Q
    ||||||| |||||||||| || |||||||||||||||||||    
T  3241366 tatcatataagtgcttatatagaagctatttctataacaaa 3241406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 99
Target Start/End: Original strand, 5276157 - 5276189
Alignment:
Q  67 aagtgcttatgtataagctatttctataacaaa 99  Q
    ||||||||||||||||||||||| |||||||||    
T  5276157 aagtgcttatgtataagctatttttataacaaa 5276189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 99
Target Start/End: Original strand, 5373158 - 5373190
Alignment:
Q  67 aagtgcttatgtataagctatttctataacaaa 99  Q
    ||||||||||||||| |||||||||||||||||    
T  5373158 aagtgcttatgtatatgctatttctataacaaa 5373190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 119 - 171
Target Start/End: Complemental strand, 12792571 - 12792519
Alignment:
Q  119 tcatgtaagctatattcataagctatcttgaagaacttatagaatgaagctga 171  Q
    |||| |||||||| |||||||||||||||||||| ||||| |||  |||||||    
T  12792571 tcatataagctattttcataagctatcttgaagagcttattgaaataagctga 12792519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 99
Target Start/End: Complemental strand, 22388041 - 22388009
Alignment:
Q  67 aagtgcttatgtataagctatttctataacaaa 99  Q
    ||||||||||| |||||||||||||||||||||    
T  22388041 aagtgcttatggataagctatttctataacaaa 22388009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 99
Target Start/End: Complemental strand, 25670722 - 25670690
Alignment:
Q  67 aagtgcttatgtataagctatttctataacaaa 99  Q
    ||||||||||||||||||||||| |||||||||    
T  25670722 aagtgcttatgtataagctatttttataacaaa 25670690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 99
Target Start/End: Complemental strand, 27378964 - 27378932
Alignment:
Q  67 aagtgcttatgtataagctatttctataacaaa 99  Q
    ||||||||||||||||||||||||||| |||||    
T  27378964 aagtgcttatgtataagctatttctattacaaa 27378932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 95
Target Start/End: Original strand, 27389308 - 27389344
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttctataa 95  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  27389308 tatcatataagtgtttatgtataagctatttctataa 27389344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 27492720 - 27492760
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttctataacaaa 99  Q
    ||||||| |||| ||||||||||| ||||||||||||||||    
T  27492720 tatcatataagttcttatgtataaactatttctataacaaa 27492760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 99
Target Start/End: Complemental strand, 35809041 - 35809009
Alignment:
Q  67 aagtgcttatgtataagctatttctataacaaa 99  Q
    ||||| |||||||||||||||||||||||||||    
T  35809041 aagtgtttatgtataagctatttctataacaaa 35809009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 136 - 188
Target Start/End: Original strand, 39280983 - 39281035
Alignment:
Q  136 ataagctatcttgaagaacttatagaatgaagctgaaaagaacttatggacat 188  Q
    ||||||||||||| ||||| ||| |||  |||||||||| |||||||||||||    
T  39280983 ataagctatcttggagaacatatggaaataagctgaaaacaacttatggacat 39281035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 47006973 - 47007013
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttctataacaaa 99  Q
    ||||||| |||||||||||||||| || |||||||||||||    
T  47006973 tatcatataagtgcttatgtataaactttttctataacaaa 47007013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 63 - 95
Target Start/End: Complemental strand, 47528074 - 47528042
Alignment:
Q  63 atacaagtgcttatgtataagctatttctataa 95  Q
    ||||||||| |||||||||||||||||||||||    
T  47528074 atacaagtgtttatgtataagctatttctataa 47528042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 49060465 - 49060505
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttctataacaaa 99  Q
    ||||||| ||||  |||||||||||||||||||||||||||    
T  49060465 tatcatataagtatttatgtataagctatttctataacaaa 49060505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 59 - 144
Target Start/End: Complemental strand, 33267661 - 33267571
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttctataacaaa---taaaat--agtcaaactgttttcatgtaagctatattcataagctat 144  Q
    ||||||| |||||||||||||||| ||||||||||||||||   ||||||  ||| ||||||||||||| |||||| | || |||||||||    
T  33267661 tatcatataagtgcttatgtataatctatttctataacaaacagtaaaataaagttaaactgttttcatataagctgtttttataagctat 33267571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 59 - 132
Target Start/End: Original strand, 29430681 - 29430758
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttctataacaaa---taaa-atagtcaaactgttttcatgtaagctata 132  Q
    ||||||||||| | |||||||||||||||||||||||||||   |||| | ||||||||||||||| | |||||||||    
T  29430681 tatcatacaagggtttatgtataagctatttctataacaaaagttaaataaagtcaaactgttttcttataagctata 29430758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 67 - 132
Target Start/End: Original strand, 10143105 - 10143175
Alignment:
Q  67 aagtgcttatgtataagctatttctataacaa---ataaaat--agtcaaactgttttcatgtaagctata 132  Q
    ||||||||||||||||| ||||||||||||||   |||||||  |||||||||||||| || |||||||||    
T  10143105 aagtgcttatgtataagttatttctataacaaaagataaaattaagtcaaactgtttttatataagctata 10143175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 124 - 189
Target Start/End: Complemental strand, 29316843 - 29316778
Alignment:
Q  124 taagctatattcataagctatcttgaagaacttatagaatgaagctgaaaagaacttatggacatg 189  Q
    |||||| | ||||| |||||||||| ||||||||| |||  ||||||||||||||||||| |||||    
T  29316843 taagctgttttcatcagctatcttggagaacttatggaaataagctgaaaagaacttatgaacatg 29316778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 59 - 132
Target Start/End: Original strand, 37053519 - 37053597
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttctataac---aaataaaat--agtcaaactgttttcatgtaagctata 132  Q
    ||||||| |||||||||||||||  |||||||||||||   |||||||||  ||||||||||||||||| |||| ||||    
T  37053519 tatcatataagtgcttatgtatagactatttctataacagaaaataaaataaagtcaaactgttttcatataagttata 37053597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 174
Target Start/End: Complemental strand, 1056423 - 1056371
Alignment:
Q  122 tgtaagctatattcataagctatcttgaagaacttatagaatgaagctgaaaa 174  Q
    |||||||||| ||||||||||||||||||||  ||||||||  ||||||||||    
T  1056423 tgtaagctattttcataagctatcttgaagagtttatagaaataagctgaaaa 1056371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 99
Target Start/End: Complemental strand, 33197384 - 33197344
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttctataacaaa 99  Q
    ||||||| |||||||||| ||||||||||||||||||||||    
T  33197384 tatcatataagtgcttatctataagctatttctataacaaa 33197344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 132
Target Start/End: Complemental strand, 35755639 - 35755569
Alignment:
Q  67 aagtgcttatgtataagctatttctataa-caaat--aaaat--agtcaaactgttttcatgtaagctata 132  Q
    ||||| ||||||||||||||||||||||| |||||  |||||  ||||||| |||||||||||||||||||    
T  35755639 aagtgtttatgtataagctatttctataatcaaatagaaaataaagtcaaattgttttcatgtaagctata 35755569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 99
Target Start/End: Complemental strand, 41033087 - 41033055
Alignment:
Q  67 aagtgcttatgtataagctatttctataacaaa 99  Q
    |||||||||||||||||||||||||||||||||    
T  41033087 aagtgcttatgtataagctatttctataacaaa 41033055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 59 - 130
Target Start/End: Complemental strand, 17952846 - 17952770
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttctataacaa---ataaaat--agtcaaactgttttcatgtaagcta 130  Q
    ||||||| ||| |||||| |||||||||||||||||||||   |||||||  ||||||||| ||||||| |||||||    
T  17952846 tatcatataagagcttatatataagctatttctataacaaaagataaaataaagtcaaactattttcatataagcta 17952770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 59 - 97
Target Start/End: Original strand, 9478224 - 9478262
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttctataaca 97  Q
    ||||||| ||||| |||||||||||||||||||||||||    
T  9478224 tatcatataagtgtttatgtataagctatttctataaca 9478262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 61 - 99
Target Start/End: Original strand, 13864577 - 13864615
Alignment:
Q  61 tcatacaagtgcttatgtataagctatttctataacaaa 99  Q
    ||||| ||||| |||||||||||||||||||||||||||    
T  13864577 tcatataagtgtttatgtataagctatttctataacaaa 13864615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 100
Target Start/End: Complemental strand, 30990507 - 30990473
Alignment:
Q  66 caagtgcttatgtataagctatttctataacaaat 100  Q
    |||||||||||||||||||| ||||||||||||||    
T  30990507 caagtgcttatgtataagctctttctataacaaat 30990473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 99
Target Start/End: Original strand, 5133708 - 5133737
Alignment:
Q  70 tgcttatgtataagctatttctataacaaa 99  Q
    ||||||||||||||||||||||||||||||    
T  5133708 tgcttatgtataagctatttctataacaaa 5133737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 132
Target Start/End: Complemental strand, 18962175 - 18962105
Alignment:
Q  67 aagtgcttatgtataagctatttctataacaa---ataaaat--agtcaaactgttttcatgtaagctata 132  Q
    |||||||||||||| |||||||| ||||||||   |||||||  ||| ||||||||||||| |||||||||    
T  18962175 aagtgcttatgtattagctatttttataacaaaagataaaataaagttaaactgttttcatataagctata 18962105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 124 - 156
Target Start/End: Original strand, 680505 - 680537
Alignment:
Q  124 taagctatattcataagctatcttgaagaactt 156  Q
    |||||||| ||||||||||||||||||||||||    
T  680505 taagctattttcataagctatcttgaagaactt 680537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 2400081 - 2400121
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttctataacaaa 99  Q
    ||||||| ||||||||||||||||| | |||||||||||||    
T  2400081 tatcatataagtgcttatgtataagttgtttctataacaaa 2400121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 10190204 - 10190244
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttctataacaaa 99  Q
    ||||||| |||||||||||||||| |||||| |||||||||    
T  10190204 tatcatataagtgcttatgtataaactatttttataacaaa 10190244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 99
Target Start/End: Complemental strand, 11393511 - 11393471
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttctataacaaa 99  Q
    ||||||| |||||||||| ||||||||||||||||| ||||    
T  11393511 tatcatataagtgcttatctataagctatttctatatcaaa 11393471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 99
Target Start/End: Complemental strand, 11393792 - 11393760
Alignment:
Q  67 aagtgcttatgtataagctatttctataacaaa 99  Q
    |||||||||||||||||||||||||||| ||||    
T  11393792 aagtgcttatgtataagctatttctataccaaa 11393760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 99
Target Start/End: Complemental strand, 11410172 - 11410132
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttctataacaaa 99  Q
    ||||||| |||||||||| ||||||||||||||||| ||||    
T  11410172 tatcatataagtgcttatctataagctatttctatatcaaa 11410132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 99
Target Start/End: Complemental strand, 11410453 - 11410421
Alignment:
Q  67 aagtgcttatgtataagctatttctataacaaa 99  Q
    |||||||||||||||||||||||||||| ||||    
T  11410453 aagtgcttatgtataagctatttctataccaaa 11410421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 99
Target Start/End: Original strand, 15119922 - 15119954
Alignment:
Q  67 aagtgcttatgtataagctatttctataacaaa 99  Q
    ||||||||||||||||||| |||||||||||||    
T  15119922 aagtgcttatgtataagctttttctataacaaa 15119954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 99
Target Start/End: Complemental strand, 15288739 - 15288711
Alignment:
Q  71 gcttatgtataagctatttctataacaaa 99  Q
    |||||||||||||||||||||||||||||    
T  15288739 gcttatgtataagctatttctataacaaa 15288711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 95
Target Start/End: Original strand, 25609729 - 25609757
Alignment:
Q  67 aagtgcttatgtataagctatttctataa 95  Q
    |||||||||||||||||||||||||||||    
T  25609729 aagtgcttatgtataagctatttctataa 25609757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 95
Target Start/End: Complemental strand, 26484229 - 26484193
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttctataa 95  Q
    ||||||| ||||||||||| |||||||||||||||||    
T  26484229 tatcatataagtgcttatggataagctatttctataa 26484193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 99
Target Start/End: Complemental strand, 26522761 - 26522729
Alignment:
Q  67 aagtgcttatgtataagctatttctataacaaa 99  Q
    |||||||||||||||| ||||||||||||||||    
T  26522761 aagtgcttatgtataaactatttctataacaaa 26522729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 31461363 - 31461403
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttctataacaaa 99  Q
    ||||||| ||||| |||| ||||||||||||||||||||||    
T  31461363 tatcatataagtggttatatataagctatttctataacaaa 31461403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 99
Target Start/End: Complemental strand, 34055038 - 34055006
Alignment:
Q  67 aagtgcttatgtataagctatttctataacaaa 99  Q
    ||||||||||||||| |||||||||||||||||    
T  34055038 aagtgcttatgtataggctatttctataacaaa 34055006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 99
Target Start/End: Complemental strand, 38239688 - 38239656
Alignment:
Q  67 aagtgcttatgtataagctatttctataacaaa 99  Q
    ||||| |||||||||||||||||||||||||||    
T  38239688 aagtgtttatgtataagctatttctataacaaa 38239656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 59 - 99
Target Start/End: Complemental strand, 1219 - 1179
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttctataacaaa 99  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  1219 tatcatataagtgcttatgtataagctatttctataacaaa 1179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 2756 - 2796
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttctataacaaa 99  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  2756 tatcatataagtgcttatgtataagctatttctataacaaa 2796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 59 - 99
Target Start/End: Complemental strand, 41028996 - 41028956
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttctataacaaa 99  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  41028996 tatcatataagtgcttatgtataagctatttctataacaaa 41028956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 132
Target Start/End: Original strand, 20669562 - 20669622
Alignment:
Q  72 cttatgtataagctatttctataacaaataaaatagtcaaactgttttcatgtaagctata 132  Q
    |||||||||||||||||||||||||||| | |  ||| ||| ||||||||| |||||||||    
T  20669562 cttatgtataagctatttctataacaaaaatacaagttaaattgttttcatataagctata 20669622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 99
Target Start/End: Complemental strand, 24268300 - 24268260
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttctataacaaa 99  Q
    |||||||||||||||||||||||| ||||||||||| ||||    
T  24268300 tatcatacaagtgcttatgtataaactatttctatagcaaa 24268260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 189
Target Start/End: Original strand, 37273145 - 37273201
Alignment:
Q  133 ttcataagctatcttgaagaacttatagaatgaagctgaaaagaacttatggacatg 189  Q
    |||||||||||||||| ||||||||| |||  ||| |||||| ||||||||||||||    
T  37273145 ttcataagctatcttggagaacttatggaaataagttgaaaacaacttatggacatg 37273201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 99
Target Start/End: Complemental strand, 43116573 - 43116533
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttctataacaaa 99  Q
    ||||||||||||| |||||| ||||||||||||||||||||    
T  43116573 tatcatacaagtgtttatgtgtaagctatttctataacaaa 43116533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 131
Target Start/End: Complemental strand, 49587064 - 49586984
Alignment:
Q  55 aaagtatcatacaagtgcttatgtataagctatttctataacaaa---taaaata--gtcaaactgttttcatgtaagctat 131  Q
    |||||| |||| |||||||||  ||||||||||||||||||||||   |||||||  |||||||||||||||| ||||||||    
T  49587064 aaagtaccatataagtgcttac-tataagctatttctataacaaaagataaaataaagtcaaactgttttcatataagctat 49586984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 59 - 98
Target Start/End: Complemental strand, 16790501 - 16790462
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttctataacaa 98  Q
    ||||||| ||||||||||||||||||||||| ||||||||    
T  16790501 tatcatataagtgcttatgtataagctatttttataacaa 16790462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 61 - 100
Target Start/End: Complemental strand, 24158645 - 24158606
Alignment:
Q  61 tcatacaagtgcttatgtataagctatttctataacaaat 100  Q
    ||||| ||||||||||||||||| ||||||||||||||||    
T  24158645 tcatataagtgcttatgtataagttatttctataacaaat 24158606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 59 - 98
Target Start/End: Original strand, 48528503 - 48528542
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttctataacaa 98  Q
    ||||||| |||| |||||||||||||||||||||||||||    
T  48528503 tatcatataagtacttatgtataagctatttctataacaa 48528542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 62 - 132
Target Start/End: Complemental strand, 8007837 - 8007762
Alignment:
Q  62 catacaagtgcttatgtataagctatttctataacaa---ataaa--atagtcaaactgttttcatgtaagctata 132  Q
    |||||||| ||||||||||||||| ||||||||||||   |||||  | |||||||||||| |||| |||||||||    
T  8007837 catacaagggcttatgtataagctgtttctataacaaaagataaagtaaagtcaaactgttatcatataagctata 8007762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 59 - 129
Target Start/End: Original strand, 27792797 - 27792872
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttctataacaa---ataaaata--gtcaaactgttttcatgtaagct 129  Q
    ||||||| |||||||||||||||||||||||| | |||||   ||||||||  |||||||| ||||||| ||||||    
T  27792797 tatcatataagtgcttatgtataagctatttcaaaaacaaaagataaaataaggtcaaactattttcatataagct 27792872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 94
Target Start/End: Complemental strand, 11039458 - 11039425
Alignment:
Q  61 tcatacaagtgcttatgtataagctatttctata 94  Q
    |||||||||||||||||||||||||||| |||||    
T  11039458 tcatacaagtgcttatgtataagctattcctata 11039425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 132
Target Start/End: Complemental strand, 20192743 - 20192673
Alignment:
Q  67 aagtgcttatgtataagctatttctataacaa---ataaaat--agtcaaactgttttcatgtaagctata 132  Q
    ||||||||||||||||||||||| ||||||||   |||||||  |||||||| |||||||| ||| |||||    
T  20192743 aagtgcttatgtataagctatttatataacaaaagataaaataaagtcaaacagttttcatataatctata 20192673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 121
Target Start/End: Complemental strand, 23808366 - 23808308
Alignment:
Q  68 agtgcttatgtataagctatttctataaca---aataaaat--agtcaaactgttttca 121  Q
    |||||||||||||||||||||||||||| |   ||||||||  ||||||||||||||||    
T  23808366 agtgcttatgtataagctatttctataatagagaataaaattaagtcaaactgttttca 23808308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 99
Target Start/End: Original strand, 24413608 - 24413649
Alignment:
Q  58 gtatcatacaagtgcttatgtataagctatttctataacaaa 99  Q
    |||||||| ||||||||| |||| ||||||||||||||||||    
T  24413608 gtatcatataagtgcttacgtatgagctatttctataacaaa 24413649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 132
Target Start/End: Original strand, 38462206 - 38462284
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttctataacaa---ataaaat--agtcaaactgttttcatgtaagctata 132  Q
    ||||||| ||||| |||| ||||||||||||||||| |||   |||||||  ||||||||||||||||| || ||||||    
T  38462206 tatcatataagtgtttatttataagctatttctataccaaaagataaaataaagtcaaactgttttcatatatgctata 38462284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 99
Target Start/End: Complemental strand, 905115 - 905075
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttctataacaaa 99  Q
    ||||||| ||| ||||| |||||||||||||||||||||||    
T  905115 tatcatataagcgcttaagtataagctatttctataacaaa 905075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 99
Target Start/End: Original strand, 1395604 - 1395636
Alignment:
Q  67 aagtgcttatgtataagctatttctataacaaa 99  Q
    |||||| ||||||||||||||||||||||||||    
T  1395604 aagtgcatatgtataagctatttctataacaaa 1395636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 73 - 189
Target Start/End: Complemental strand, 2128382 - 2128261
Alignment:
Q  73 ttatgtataagctatttctataacaa---ataaaat--agtcaaactgttttcatgtaagctatattcataagctatcttgaagaacttatagaatgaag 167  Q
    ||||||||||||||||||||||||||   |||||||  ||| ||| ||||||  |||||||| | ||||||||| |||||  ||||| |||  ||  |||    
T  2128382 ttatgtataagctatttctataacaaaagataaaataaagttaaattgttttactgtaagctgttttcataagccatcttttagaacgtatgaaaataag 2128283  T
Q  168 ctgaaaagaacttatggacatg 189  Q
    ||||||| | |||||| |||||    
T  2128282 ctgaaaacagcttatgaacatg 2128261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 99
Target Start/End: Complemental strand, 16790233 - 16790193
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttctataacaaa 99  Q
    ||||||| |||||||||| |||||| |||||||||||||||    
T  16790233 tatcatataagtgcttatatataagttatttctataacaaa 16790193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 99
Target Start/End: Complemental strand, 20211066 - 20211026
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttctataacaaa 99  Q
    |||||| |||||| |||||||||||| ||||||||||||||    
T  20211066 tatcatgcaagtgtttatgtataagccatttctataacaaa 20211026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 127
Target Start/End: Original strand, 22232751 - 22232824
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttctataacaa---ataaaat--agtcaaactgttttcatgtaag 127  Q
    ||||||| || |||| ||||||||||||||| ||||||||   |||||||  ||||||||||||||||| ||||    
T  22232751 tatcatataaatgctcatgtataagctatttatataacaaatgataaaataaagtcaaactgttttcatataag 22232824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 106
Target Start/End: Complemental strand, 27291044 - 27290996
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttctataacaa-ataaaata 106  Q
    ||||||| ||||||||| ||||||| |||||||||||||| ||||||||    
T  27291044 tatcatataagtgcttaggtataaggtatttctataacaagataaaata 27290996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 99
Target Start/End: Complemental strand, 33307725 - 33307685
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttctataacaaa 99  Q
    ||||||| ||||||||||||||||||||||||  |||||||    
T  33307725 tatcatataagtgcttatgtataagctatttcagtaacaaa 33307685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 99
Target Start/End: Complemental strand, 35127508 - 35127476
Alignment:
Q  67 aagtgcttatgtataagctatttctataacaaa 99  Q
    ||||||||||||||| |||||||||||||||||    
T  35127508 aagtgcttatgtataggctatttctataacaaa 35127476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 99
Target Start/End: Original strand, 42039092 - 42039124
Alignment:
Q  67 aagtgcttatgtataagctatttctataacaaa 99  Q
    ||||||||||||||||||||||||| |||||||    
T  42039092 aagtgcttatgtataagctatttctgtaacaaa 42039124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 99
Target Start/End: Complemental strand, 44284203 - 44284163
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttctataacaaa 99  Q
    ||||||| |||| || |||||||||||||||||||||||||    
T  44284203 tatcatataagtactaatgtataagctatttctataacaaa 44284163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 99
Target Start/End: Complemental strand, 44374789 - 44374749
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttctataacaaa 99  Q
    ||||||| ||||||||||||||||||||| ||| |||||||    
T  44374789 tatcatataagtgcttatgtataagctatatctttaacaaa 44374749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 99
Target Start/End: Complemental strand, 51278302 - 51278262
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttctataacaaa 99  Q
    ||||||| || |||| |||||||||||||||||||||||||    
T  51278302 tatcatataattgctaatgtataagctatttctataacaaa 51278262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 99
Target Start/End: Complemental strand, 52413258 - 52413226
Alignment:
Q  67 aagtgcttatgtataagctatttctataacaaa 99  Q
    ||||||||||||||||||||||| |||||||||    
T  52413258 aagtgcttatgtataagctatttttataacaaa 52413226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 99
Target Start/End: Complemental strand, 52450197 - 52450157
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttctataacaaa 99  Q
    |||||||||||| |||||| |||||| ||||||||||||||    
T  52450197 tatcatacaagtacttatgcataagcaatttctataacaaa 52450157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 99
Target Start/End: Original strand, 54194456 - 54194484
Alignment:
Q  71 gcttatgtataagctatttctataacaaa 99  Q
    |||||||||||||||||||||||||||||    
T  54194456 gcttatgtataagctatttctataacaaa 54194484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 99
Target Start/End: Original strand, 13037791 - 13037829
Alignment:
Q  61 tcatacaagtgcttatgtataagctatttctataacaaa 99  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  13037791 tcatataagtgcttatgtataagctatttctataacaaa 13037829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 99
Target Start/End: Complemental strand, 24146404 - 24146364
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttctataacaaa 99  Q
    |||||| |||||||||||||||||| |||||||||||||||    
T  24146404 tatcatgcaagtgcttatgtataagttatttctataacaaa 24146364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 35350546 - 35350586
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttctataacaaa 99  Q
    |||||||||||| ||||| ||||||||||||||||||||||    
T  35350546 tatcatacaagttcttatttataagctatttctataacaaa 35350586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 67 - 132
Target Start/End: Original strand, 15579416 - 15579485
Alignment:
Q  67 aagtgcttatgtataagctatttctataacaaa---taaaat-agtcaaactgttttcatgtaagctata 132  Q
    |||||||||||||||||||||||||||||| ||   | |||| | ||||| |||||||||||||||||||    
T  15579416 aagtgcttatgtataagctatttctataactaaagttcaaataaatcaaattgttttcatgtaagctata 15579485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 124 - 183
Target Start/End: Original strand, 34290238 - 34290297
Alignment:
Q  124 taagctatattcataagctatcttgaagaacttatagaatgaagctgaaaagaacttatg 183  Q
    |||||| | ||||||||||||||||||||||||||  ||  |||||||||| ||||||||    
T  34290238 taagctgttttcataagctatcttgaagaacttatgaaaataagctgaaaacaacttatg 34290297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 59 - 189
Target Start/End: Complemental strand, 44032144 - 44032002
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttctataacaaa---taaaat--agtcaaactgttttcatgtaagctata-------ttcataagctatct 146  Q
    ||||||| ||||| ||||||||||||  |||||||||||||   ||||||  ||||||| ||||||||| |||||||||       ||| |||| |||||    
T  44032144 tatcatataagtgtttatgtataagccgtttctataacaaaagctaaaataaagtcaaattgttttcatataagctataaactattttcttaagttatct 44032045  T
Q  147 tgaagaacttatagaatgaagctgaaaagaacttatggacatg 189  Q
    |||||| ||||| |||   ||||||||| | ||||||||||||    
T  44032044 tgaagagcttatggaaattagctgaaaatagcttatggacatg 44032002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 59 - 132
Target Start/End: Original strand, 45107548 - 45107625
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttctata--acaaataaaat--agtcaaactgttttcatgtaagctata 132  Q
    ||||||| |||||||||| |||||||||||||||||  | |||||||||  ||||||||| ||||||| |||| ||||    
T  45107548 tatcatataagtgcttatctataagctatttctataagaaaaataaaataaagtcaaactattttcatataagttata 45107625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 132
Target Start/End: Original strand, 15360826 - 15360897
Alignment:
Q  66 caagtgcttatgtataagctatttctataacaaa---taaaata--gtcaaactgttttcatgtaagctata 132  Q
    |||||| |||||||| || |||||||||||||||   |||||||  |||||||||||||||| |||||||||    
T  15360826 caagtgtttatgtattagttatttctataacaaaagataaaataaagtcaaactgttttcatataagctata 15360897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 67 - 97
Target Start/End: Original strand, 39339856 - 39339886
Alignment:
Q  67 aagtgcttatgtataagctatttctataaca 97  Q
    |||||||||||||||||||||||||||||||    
T  39339856 aagtgcttatgtataagctatttctataaca 39339886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 94
Target Start/End: Original strand, 488932 - 488961
Alignment:
Q  65 acaagtgcttatgtataagctatttctata 94  Q
    ||||||||||||||||||||||||||||||    
T  488932 acaagtgcttatgtataagctatttctata 488961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 99
Target Start/End: Original strand, 2462903 - 2462932
Alignment:
Q  70 tgcttatgtataagctatttctataacaaa 99  Q
    ||||||||||||||||||||||||||||||    
T  2462903 tgcttatgtataagctatttctataacaaa 2462932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 119
Target Start/End: Original strand, 5160342 - 5160397
Alignment:
Q  67 aagtgcttatgtataagctatttctataacaa---ataaaatagtcaaactgtttt 119  Q
    ||||| ||||||||||||||||||||||||||   |||| | ||||||||||||||    
T  5160342 aagtgtttatgtataagctatttctataacaacatataataaagtcaaactgtttt 5160397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 106
Target Start/End: Original strand, 6292424 - 6292465
Alignment:
Q  65 acaagtgcttatgtataagctatttctataacaaataaaata 106  Q
    |||||||||| ||||||||| |||||||||||||| ||||||    
T  6292424 acaagtgcttctgtataagccatttctataacaaaaaaaata 6292465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 182
Target Start/End: Complemental strand, 12564558 - 12564509
Alignment:
Q  133 ttcataagctatcttgaagaacttatagaatgaagctgaaaagaacttat 182  Q
    |||||||||||||||| ||||||||| |||  |||||||||| |||||||    
T  12564558 ttcataagctatcttggagaacttatggaaataagctgaaaacaacttat 12564509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 148
Target Start/End: Original strand, 23895261 - 23895355
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttctataacaa---ataaaat--agtcaaactgttttcatgtaagctatattcataagctatcttg 148  Q
    ||||||| ||||  ||||||||||||||||||||||||||   |||||||  | |||||||||| |||| || ||||| || |||| ||||||||    
T  23895261 tatcatataagttattatgtataagctatttctataacaaaagataaaataaattcaaactgttctcatatatgctatttttataaactatcttg 23895355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 132
Target Start/End: Complemental strand, 30259632 - 30259554
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttctataacaa---ataaaat--agtcaaactgttttcatgtaagctata 132  Q
    ||||||| ||||||||||| | ||||||||||||||||||   |||||||  |||||||||| ||| || |||||||||    
T  30259632 tatcatagaagtgcttatgcacaagctatttctataacaaaatataaaataaagtcaaactgctttgatataagctata 30259554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 174
Target Start/End: Complemental strand, 37842414 - 37842373
Alignment:
Q  133 ttcataagctatcttgaagaacttatagaatgaagctgaaaa 174  Q
    ||||||||||||||||||||||||||| ||  ||||||||||    
T  37842414 ttcataagctatcttgaagaacttataaaaataagctgaaaa 37842373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 99
Target Start/End: Original strand, 41638177 - 41638214
Alignment:
Q  62 catacaagtgcttatgtataagctatttctataacaaa 99  Q
    |||| |||||||||||||| ||||||||||||||||||    
T  41638177 catataagtgcttatgtattagctatttctataacaaa 41638214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 92
Target Start/End: Original strand, 42550166 - 42550199
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttcta 92  Q
    |||||||||||||||||||||||||||| |||||    
T  42550166 tatcatacaagtgcttatgtataagctagttcta 42550199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 132
Target Start/End: Original strand, 44422626 - 44422702
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttctataaca-aataaaata--gtcaaactgttttcatgtaagctata 132  Q
    |||||||||||  || ||||||||||||||| |||||||  ||||||||   ||||||||||||||| |||||||||    
T  44422626 tatcatacaaggactcatgtataagctatttttataacatgataaaataatctcaaactgttttcatataagctata 44422702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 132
Target Start/End: Complemental strand, 45999425 - 45999355
Alignment:
Q  67 aagtgcttatgtataagctatttctataacaa---ataaaat--agtcaaactgttttcatgtaagctata 132  Q
    ||||||| ||||||||||||||||||||||||   |||| ||  |||||||||| |||||| |||||||||    
T  45999425 aagtgctcatgtataagctatttctataacaaaagataagataaagtcaaactgctttcatataagctata 45999355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 96
Target Start/End: Original strand, 46712298 - 46712335
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttctataac 96  Q
    ||||| ||||||||||| ||||||||||||||||||||    
T  46712298 tatcacacaagtgcttaggtataagctatttctataac 46712335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 92
Target Start/End: Complemental strand, 50764519 - 50764486
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttcta 92  Q
    |||||||||| |||||||||||||||||||||||    
T  50764519 tatcatacaattgcttatgtataagctatttcta 50764486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 870970 - 871010
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttctataacaaa 99  Q
    ||||||| |||||||||||||||| |||||| |||||||||    
T  870970 tatcatataagtgcttatgtataaactatttttataacaaa 871010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 99
Target Start/End: Complemental strand, 4202274 - 4202234
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttctataacaaa 99  Q
    ||||||| ||||||||| ||||||| |||||||||||||||    
T  4202274 tatcatataagtgcttaagtataagttatttctataacaaa 4202234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 193 - 221
Target Start/End: Original strand, 4338766 - 4338794
Alignment:
Q  193 ttaaataaactcaaatgagtcaattcaaa 221  Q
    |||||||||||||||||||||||||||||    
T  4338766 ttaaataaactcaaatgagtcaattcaaa 4338794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 95
Target Start/End: Complemental strand, 6110301 - 6110273
Alignment:
Q  67 aagtgcttatgtataagctatttctataa 95  Q
    |||||||||||||||||||||||||||||    
T  6110301 aagtgcttatgtataagctatttctataa 6110273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 6659628 - 6659668
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttctataacaaa 99  Q
    ||||||| |||||||||||||||| ||||||||||| ||||    
T  6659628 tatcatataagtgcttatgtataaactatttctatagcaaa 6659668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 124 - 188
Target Start/End: Complemental strand, 14630034 - 14629970
Alignment:
Q  124 taagctatattcataagctatcttgaagaacttatagaatgaagctgaaaagaacttatggacat 188  Q
    |||||||| |||||||||||||||| |||  |||| |||  |||||||||| |||||||| ||||    
T  14630034 taagctattttcataagctatcttggagactttatggaaataagctgaaaacaacttatgaacat 14629970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 99
Target Start/End: Complemental strand, 38651546 - 38651514
Alignment:
Q  67 aagtgcttatgtataagctatttctataacaaa 99  Q
    |||||||||||||||||||| ||||||||||||    
T  38651546 aagtgcttatgtataagctaattctataacaaa 38651514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 99
Target Start/End: Original strand, 42397696 - 42397728
Alignment:
Q  67 aagtgcttatgtataagctatttctataacaaa 99  Q
    ||||||||||||||||||||||||| |||||||    
T  42397696 aagtgcttatgtataagctatttctgtaacaaa 42397728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 95
Target Start/End: Original strand, 48282058 - 48282094
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttctataa 95  Q
    ||||||| ||||||||||||| |||||||||||||||    
T  48282058 tatcatataagtgcttatgtaaaagctatttctataa 48282094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0654 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0654
Description:

Target: scaffold0654; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 99
Target Start/End: Complemental strand, 6782 - 6742
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttctataacaaa 99  Q
    ||||||| |||||||||||||||| ||||||||||||||||    
T  6782 tatcatataagtgcttatgtataaactatttctataacaaa 6742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 99
Target Start/End: Complemental strand, 116701 - 116661
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttctataacaaa 99  Q
    ||||||| |||||||||||||||| ||||||||||||||||    
T  116701 tatcatataagtgcttatgtataaactatttctataacaaa 116661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 99
Target Start/End: Complemental strand, 9920 - 9880
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttctataacaaa 99  Q
    ||||||| | ||||||||||||||| |||||||||||||||    
T  9920 tatcatataggtgcttatgtataagttatttctataacaaa 9880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 42542 - 42582
Alignment:
Q  59 tatcatacaagtgcttatgtataagctatttctataacaaa 99  Q
    ||||||| |||||||||||||||||  ||||||||||||||    
T  42542 tatcatataagtgcttatgtataagtcatttctataacaaa 42582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 4658 times since January 2019
Visitors: 4838