View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0739_low_14 (Length: 372)

Name: NF0739_low_14
Description: NF0739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0739_low_14
NF0739_low_14
[»] chr8 (8 HSPs)
chr8 (82-352)||(2013449-2013719)
chr8 (81-155)||(2019298-2019371)
chr8 (82-155)||(1962441-1962513)
chr8 (82-155)||(2015916-2015988)
chr8 (82-136)||(2005522-2005576)
chr8 (82-135)||(1968060-1968113)
chr8 (82-135)||(2008902-2008955)
chr8 (86-133)||(1964500-1964547)
[»] chr3 (1 HSPs)
chr3 (81-135)||(18189425-18189479)
[»] chr1 (1 HSPs)
chr1 (90-150)||(5901624-5901684)


Alignment Details
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 82 - 352
Target Start/End: Original strand, 2013449 - 2013719
Alignment:
Q  82 atatccaacacctggaacaactgcaatatgaattgttttctccatgtaaatttgttgttgagtttacagcttatgatcatgtaaagcttttttgtttatt 181  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  2013449 atatccaacacctggaacaactgcaatatgaatttttttctccatggaaatttgttgtttagtttacagcttatgatcatgtaaagcttttttgtttatt 2013548  T
Q  182 gtgacttctaaaggaaaatacttgaacttacctacctgtacatgtgcaaaaacagaataattatccatatgatatgattgggaagtttgaaaacggtgaa 281  Q
    |||||||||||| ||||||| |||||||||||||||| ||||||||| ||||||| || ||||| |||||||||||||||||||||||||||| | ||||    
T  2013549 gtgacttctaaaagaaaataattgaacttacctacctatacatgtgctaaaacagtatcattatgcatatgatatgattgggaagtttgaaaaggatgaa 2013648  T
Q  282 taagggccacatattatggtaataatacaaaaataattctaattgtacacaagttcctatccattcaaaac 352  Q
     ||| |||||| ||| |||||||||||||| | |||||||||||||| ||||||||||||| |||| ||||    
T  2013649 caagagccacacattttggtaataatacaagagtaattctaattgtagacaagttcctatctattctaaac 2013719  T

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Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 81 - 155
Target Start/End: Original strand, 2019298 - 2019371
Alignment:
Q  81 catatccaacacctggaacaactgcaatatgaattgttttctccatgtaaatttgttgttgagtttacagcttat 155  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||| || ||||||||||||||    
T  2019298 catatccaacacctggaacaactgcaatatgaactgttttctccatgaaaattagttatt-agtttacagcttat 2019371  T

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Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 82 - 155
Target Start/End: Complemental strand, 1962513 - 1962441
Alignment:
Q  82 atatccaacacctggaacaactgcaatatgaattgttttctccatgtaaatttgttgttgagtttacagcttat 155  Q
    |||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||| || ||||||||||||||    
T  1962513 atatccaacaccaggaacaactgcaatatgaactgttttctccatgaaaatttgttctt-agtttacagcttat 1962441  T

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Target: chr8; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 82 - 155
Target Start/End: Original strand, 2015916 - 2015988
Alignment:
Q  82 atatccaacacctggaacaactgcaatatgaattgttttctccatgtaaatttgttgttgagtttacagcttat 155  Q
    |||||||||||||||||||||||||||||||||||||||||||||  ||||||||| || ||||||| ||||||    
T  2015916 atatccaacacctggaacaactgcaatatgaattgttttctccataaaaatttgttctt-agtttaccgcttat 2015988  T

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Target: chr8; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 82 - 136
Target Start/End: Original strand, 2005522 - 2005576
Alignment:
Q  82 atatccaacacctggaacaactgcaatatgaattgttttctccatgtaaatttgt 136  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  2005522 atatccaacacctggaacaactgcaatatgaattgttttctccatggaaacttgt 2005576  T

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Target: chr8; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 82 - 135
Target Start/End: Complemental strand, 1968113 - 1968060
Alignment:
Q  82 atatccaacacctggaacaactgcaatatgaattgttttctccatgtaaatttg 135  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| |||||||    
T  1968113 atatccaacacctggaacaactgcaatatgaactgttttctccatggaaatttg 1968060  T

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Target: chr8; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 82 - 135
Target Start/End: Original strand, 2008902 - 2008955
Alignment:
Q  82 atatccaacacctggaacaactgcaatatgaattgttttctccatgtaaatttg 135  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| |||||||    
T  2008902 atatccaacacctggaacaactgcaatatgaactgttttctccatggaaatttg 2008955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 86 - 133
Target Start/End: Complemental strand, 1964547 - 1964500
Alignment:
Q  86 ccaacacctggaacaactgcaatatgaattgttttctccatgtaaatt 133  Q
    ||||||||||||||||||||||| ||||| |||||||||||| |||||    
T  1964547 ccaacacctggaacaactgcaatgtgaatggttttctccatggaaatt 1964500  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 81 - 135
Target Start/End: Complemental strand, 18189479 - 18189425
Alignment:
Q  81 catatccaacacctggaacaactgcaatatgaattgttttctccatgtaaatttg 135  Q
    |||| ||||||||||||||||||||||| ||||||||||| |||||| |||||||    
T  18189479 catacccaacacctggaacaactgcaatgtgaattgttttatccatggaaatttg 18189425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 150
Target Start/End: Complemental strand, 5901684 - 5901624
Alignment:
Q  90 cacctggaacaactgcaatatgaattgttttctccatgtaaatttgttgttgagtttacag 150  Q
    ||||||||| ||| ||||| |||||||||||||||||| |||||||| ||| |||| ||||    
T  5901684 cacctggaataacagcaatgtgaattgttttctccatgaaaatttgtggttaagttcacag 5901624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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