View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0739_low_2 (Length: 585)

Name: NF0739_low_2
Description: NF0739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0739_low_2
NF0739_low_2
[»] chr5 (4 HSPs)
chr5 (246-488)||(38813993-38814235)
chr5 (1-130)||(38814350-38814479)
chr5 (246-409)||(38820573-38820736)
chr5 (5-65)||(38820887-38820949)


Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 246 - 488
Target Start/End: Complemental strand, 38814235 - 38813993
Alignment:
Q  246 aatgattctcgcatcatacacaggaccaccgcatctttgccaggatttacagttcttccccttcgacaatttggaacctgggggcctgaaataaattcga 345  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38814235 aatgattctcgcatcatacacaggaccaccgcatctttgccaggatttacagttcttccccttcgacaatttggaacctgggggcctgaaataaattcga 38814136  T
Q  346 aatttgatcttcaaaaggatacatatgttctggtaagcacaactttagcagtctaagtttgaatagttagaagcctttgttttttgatgtttcagttcat 445  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  38814135 aatttgatcttcaaaaggatacatatgttctggtaagcacaactttagcagtccaagtttgaatagttagaagcctttgttttttgatgtttcagttcat 38814036  T
Q  446 tcatctttattttgattttcaatattgaagctgaattagctgc 488  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  38814035 tcatctttattttgattttcaatattgaagctgaattagctgc 38813993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 38814479 - 38814350
Alignment:
Q  1 agttagtgatgataagttgatgaggaaatgagcttgcacaaaagagaatatcaagctgatctataattcactagaaagtattgagagcatttcaacgcta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38814479 agttagtgatgataagttgatgaggaaatgagcttgcacaaaagagaatatcaagctgatctataattcactagaaagtattgagagcatttcaacgcta 38814380  T
Q  101 attcccttttgatatctcatggatatctgc 130  Q
    ||||||||||||||||||||||||||||||    
T  38814379 attcccttttgatatctcatggatatctgc 38814350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 246 - 409
Target Start/End: Complemental strand, 38820736 - 38820573
Alignment:
Q  246 aatgattctcgcatcatacacaggaccaccgcatctttgccaggatttacagttcttccccttcgacaatttggaacctgggggcctgaaataaattcga 345  Q
    |||||| ||| ||| |||||||||  ||  || ||||||||||||||||  ||||||||||| |  |||||||||||||||| ||||||||||||  | |    
T  38820736 aatgatactctcattatacacagggacaaagcgtctttgccaggatttatggttcttcccctccttcaatttggaacctgggtgcctgaaataaacacca 38820637  T
Q  346 aatttgatcttcaaaaggatacatatgttctggtaagcacaactttagcagtctaagtttgaat 409  Q
    |||| |||||||||||| ||||||||||||| ||||| ||| ||||||||||| ||||||||||    
T  38820636 aattggatcttcaaaagaatacatatgttcttgtaagtacagctttagcagtccaagtttgaat 38820573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 5 - 65
Target Start/End: Complemental strand, 38820949 - 38820887
Alignment:
Q  5 agtgatgataagttgatgaggaaatgagcttgcacaaa--agagaatatcaagctgatctata 65  Q
    |||| ||||||||||||||||| | |||||||||||||  ||| |||||||||||||||||||    
T  38820949 agtggtgataagttgatgaggataagagcttgcacaaaatagacaatatcaagctgatctata 38820887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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