View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0739_low_22 (Length: 326)
Name: NF0739_low_22
Description: NF0739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0739_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 30 - 316
Target Start/End: Original strand, 28732099 - 28732385
Alignment:
| Q |
30 |
gcctcattgtgatatgtgtaaatgnnnnnnnnatctgcattcaacttctatttaagcaaatatggttggctgtgagcagaaatggtacttcaggagtgcc |
129 |
Q |
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| T |
28732099 |
gcctcattgtgatatgtgtaaatgttttttttatctgcattcaacttctatttaagcaaatatggttggctgtgagcagaaatggtacttcaggagtgcc |
28732198 |
T |
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| Q |
130 |
ccgaaagaaatctccttcaaatcctcggactgctcgcaagacgaagtcatcaggatctgattctaactccgcttcgtcatcttcaaacccagcaaataaa |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28732199 |
ccgaaagaaatctccttcaaatcctcggactgctcgcaagacaaagtcatcaggatctgattctaactccgcttcgtcatcttcaaacccagcaaataaa |
28732298 |
T |
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| Q |
230 |
attccaaaagataggagcccaaatgtcaagtcaacacaaagtccaatatctgaggtacattttaagttcatataagacttacctttg |
316 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
28732299 |
actccaaaagataggagcccaaatgtcaagtcaacacaaagtccaatatctgaggtacattttaagttcctataagacttacctttg |
28732385 |
T |
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