View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0739_low_24 (Length: 320)
Name: NF0739_low_24
Description: NF0739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0739_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 27045589 - 27045359
Alignment:
| Q |
1 |
tcaaaaactcgatcgatcacactccgaagacggagcataagcaagattttagcatggacggtagcggtgcggtaacgattctgactgagtggaagcattt |
100 |
Q |
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| T |
27045589 |
tcaaaaactcgatcgatcacactccggagacggagcataagcaagattttagcatggacggtagcggtgcggtaacgattctgactgagtggaagcattt |
27045490 |
T |
|
| Q |
101 |
aggttttgttgatgaaaatagtatagattttggagggtatgaatcagtgaattttgtaccagcaccatgcaacatgtttgcgtctttagaagggtgcatt |
200 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
27045489 |
aggttttgttgatgaaaataatatagattttggagggtatgaatcagtgaattttgtaccagcaccatgcaacatgtttgcgtctttggaagggtgcatt |
27045390 |
T |
|
| Q |
201 |
ttcgcatctcctggtaaacttgatgatgatg |
231 |
Q |
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| T |
27045389 |
ttcgcatctcctggtaaacttgatgatgatg |
27045359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 65 - 184
Target Start/End: Complemental strand, 27105258 - 27105142
Alignment:
| Q |
65 |
cggtgcggtaacgattctgactgagtggaagcatttaggttttgttgatgaaaatagtatagattttggagggtatgaatcagtgaattttgtaccagca |
164 |
Q |
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| T |
27105258 |
cggtgcagtaacggttctgacagagtggaaacatttaggttttcttgatggaaatg---tagattttggtgggcatgaagcagtgaatttagtaccagca |
27105162 |
T |
|
| Q |
165 |
ccatgcaacatgtttgcgtc |
184 |
Q |
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| T |
27105161 |
ccatgcaacttgtttgcgtc |
27105142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 66 - 184
Target Start/End: Complemental strand, 27098258 - 27098143
Alignment:
| Q |
66 |
ggtgcggtaacgattctgactgagtggaagcatttaggttttgttgatgaaaatagtatagattttggagggtatgaatcagtgaattttgtaccagcac |
165 |
Q |
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||||| |||||| ||||||| |||||||| |||||||||||| |||||| |||| |||||||||| ||| | ||| |||||||||| |||||||||| |
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| T |
27098258 |
ggtgcagtaacggttctgacagagtggaaacatttaggttttcttgatggaaatg---tagattttggtgggaacgaagcagtgaatttagtaccagcac |
27098162 |
T |
|
| Q |
166 |
catgcaacatgtttgcgtc |
184 |
Q |
| |
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||||||||||||||||||| |
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| T |
27098161 |
catgcaacatgtttgcgtc |
27098143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 124 - 181
Target Start/End: Complemental strand, 27062411 - 27062354
Alignment:
| Q |
124 |
tagattttggagggtatgaatcagtgaattttgtaccagcaccatgcaacatgtttgc |
181 |
Q |
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||||||||||||| ||||||| |||||||||| |||| ||||||||||| ||| |||| |
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|
| T |
27062411 |
tagattttggaggttatgaattagtgaattttctacctgcaccatgcaagatgcttgc |
27062354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 179
Target Start/End: Complemental strand, 19414212 - 19414159
Alignment:
| Q |
126 |
gattttggagggtatgaatcagtgaattttgtaccagcaccatgcaacatgttt |
179 |
Q |
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||||||||||| | |||| |||| ||||||||| ||||||||||||||||||| |
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|
| T |
19414212 |
gattttggaggatttgaagcagttaattttgtaatagcaccatgcaacatgttt |
19414159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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