View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0739_low_27 (Length: 317)
Name: NF0739_low_27
Description: NF0739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0739_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 812176 - 812422
Alignment:
| Q |
1 |
caacaaaattattttatacattttaaaataagaagtttcaactgaaacaaattaaggcacatat--gagactctacaacaataaatacacatcagcagac |
98 |
Q |
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| T |
812176 |
caacaaaattattttatacattttaacataagaagtttcaactgaaacaaattaaggcacatatatgagactctacaacgataaatacacatcagcagac |
812275 |
T |
|
| Q |
99 |
agaagaattataattaccatccaaatcaagaacaagggtaacatgcttccttttacttgtctccttgcttactagagctggcaatgagttggattcatct |
198 |
Q |
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| T |
812276 |
agaagaattataattaccatccaaatcaagaacaagggtaacatgcttccttttacttgtctccttgcttactagagctggcaatgagttggattcatct |
812375 |
T |
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| Q |
199 |
gatacctccaagaagcttatgaatatatctggatcagtataatctac |
245 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
812376 |
gatacctccaagaagcttatgaatatatccggatcagtataatctac |
812422 |
T |
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