View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0739_low_29 (Length: 310)
Name: NF0739_low_29
Description: NF0739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0739_low_29 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 106 - 310
Target Start/End: Complemental strand, 53588477 - 53588272
Alignment:
| Q |
106 |
aattgcattacaatcttaatggaagcaggtcatcgtaacgaaaatggtaaaagcgggccaccttaacgaattgccttaaaaaa-tttggaccacctcaat |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |
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| T |
53588477 |
aattgcattacaatcttaatggaagcaggtcatcgtaatgaaaatggtaaaagcgggccaccttaacgaactgccttaaaaaaatttggaccacctcaat |
53588378 |
T |
|
| Q |
205 |
taggacgaactgtcttacagttatcaataaaagatataattacaaaagactcttacaatacaaatgacagagaaatatggtgaaagcatttcaacctaat |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53588377 |
taggacgaactgtcttacagttatcaataaaagatataattacaaaagactcttacaatacaaatgacagagaaatatggtgaaagcatttcaacctaat |
53588278 |
T |
|
| Q |
305 |
agtacc |
310 |
Q |
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|||||| |
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| T |
53588277 |
agtacc |
53588272 |
T |
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