View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0739_low_3 (Length: 499)
Name: NF0739_low_3
Description: NF0739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0739_low_3 |
 | |
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| [»] scaffold0008 (1 HSPs) |
| | |
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Alignment Details
Target: chr6 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 86 - 430
Target Start/End: Complemental strand, 34760261 - 34759917
Alignment:
| Q |
86 |
tgcaccaaacagaaataaacgctgcaaccacccatacctctaacgttgtagacaaagtcttggattccaactccattcatagaagaagcaagacggagta |
185 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34760261 |
tgcaccaaacagaaacaaacgctgcaaccacccatacctctaacgttgtagacaaagtcttggattccaactccattcatagaagaagcaagacggagta |
34760162 |
T |
|
| Q |
186 |
ctagacctttccaacaaccatctccaagatcacaccttaatctcgtcaatcacatcctccaccacacaattaatccccttgaaaatcaagtcattcctct |
285 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34760161 |
ctagacctttccaacaaccatctccaagaccacaccttaatctcttcaatcacatcctccaccacacaattaatccccttgaaaatcaagtcattcctct |
34760062 |
T |
|
| Q |
286 |
tggtccacaaaacccaaatagtagtatgccaaaccaaccaaaggtctttagtaaccttattagctctcccaccttcactccaacaatctcaaagaacaaa |
385 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34760061 |
tggtccacaaaacccaaatagtagtatgccaaaccaaccaaaagcctttagtaaccttattagctctcccaccttcactccaacaatctcaaagaacaaa |
34759962 |
T |
|
| Q |
386 |
taaattaggaggaattnnnnnnnncaacaatcaaaccacttcatc |
430 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| |
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|
| T |
34759961 |
taaattaggaggaattaaaaaaaacaacaatcaaaccacttcatc |
34759917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 86 - 401
Target Start/End: Complemental strand, 11545884 - 11545565
Alignment:
| Q |
86 |
tgcaccaaacagaaataaacgctgcaaccacccatacctctaacgttgtagacaaagtcttggattccaactccattcatagaagaagcaagacggagta |
185 |
Q |
| |
|
||||||||| ||||| ||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
11545884 |
tgcaccaaatagaaacaaacgttgcaaccacccatacctctaacgctgtaaacaaagtcttggattccaactctattcatagaagaagcaagacggagta |
11545785 |
T |
|
| Q |
186 |
ctagacctttccaacaaccatctccaagatcacaccttaatctcgtcaatcacatcctccaccacacaattaatccccttgaaaatcaagtcattcctct |
285 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11545784 |
ctagacctttccaacaaccatctccaagatcacaccttaatctcgtcaatcacatcctccaccacacaattaatccccttgaaaatcaagtcattcctct |
11545685 |
T |
|
| Q |
286 |
tggtccacaaaacccaaatagtagtatgccaaaccaaccaaaggtct----ttagtaaccttattagctctcccaccttcactccaacaatctcaaagaa |
381 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
11545684 |
tggtccacaaaacccaaatagtagtatgccaaaccaaccaaaggtctttaattagtaaccttattagctctcccaccttcactccaacaatcccaaagaa |
11545585 |
T |
|
| Q |
382 |
caaataaattaggaggaatt |
401 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
11545584 |
caaataaattaggaggaatt |
11545565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 208; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 86 - 401
Target Start/End: Complemental strand, 26384621 - 26384306
Alignment:
| Q |
86 |
tgcaccaaacagaaataaacgctgcaaccacccatacctctaacgttgtagacaaagtcttggattccaactccattcatagaagaagcaagacggagta |
185 |
Q |
| |
|
||||||||||| ||| || ||||||||||||| | || |||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26384621 |
tgcaccaaacaaaaacaaccgctgcaaccacctacacatctatcgctctagacaaagtcttggattccaactccattcatagaagaagcaagacggagta |
26384522 |
T |
|
| Q |
186 |
ctagacctttccaacaaccatctccaagatcacaccttaatctcgtcaatcacatcctccaccacacaattaatccccttgaaaatcaagtcattcctct |
285 |
Q |
| |
|
|||||||||||||||| |||||||||||| |||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |
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| T |
26384521 |
ctagacctttccaacatccatctccaagacaacaccttaatatcttcaatcacatcctccgtcacacaattaatccccttgaaaatcaagtcatttctct |
26384422 |
T |
|
| Q |
286 |
tggtccacaaaacccaaatagtagtatgccaaaccaaccaaaggtctttagtaaccttattagctctcccaccttcactccaacaatctcaaagaacaaa |
385 |
Q |
| |
|
| | |||||||||||||||||||||||| || |||||||||||| |||||||||| |||||||| || || ||||||||||||||||| ||||||||||| |
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|
| T |
26384421 |
tagcccacaaaacccaaatagtagtatgtcacaccaaccaaaggcctttagtaactttattagcacttccgccttcactccaacaatcccaaagaacaaa |
26384322 |
T |
|
| Q |
386 |
taaattaggaggaatt |
401 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
26384321 |
taaattaggaggaatt |
26384306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 161; Significance: 1e-85; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 109 - 401
Target Start/End: Complemental strand, 20700783 - 20700491
Alignment:
| Q |
109 |
gcaaccacccatacctctaacgttgtagacaaagtcttggattccaactccattcatagaagaagcaagacggagtactagacctttccaacaaccatct |
208 |
Q |
| |
|
||||||||| | |||||||||| | ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| || ||||||| |||||| |
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|
| T |
20700783 |
gcaaccaccaacacctctaacgctctagacaaagtcttggattccaactccattcatagaagaaacaagacggagtgctagatctctccaacatccatct |
20700684 |
T |
|
| Q |
209 |
ccaagatcacaccttaatctcgtcaatcacatcctccaccacacaattaatccccttgaaaatcaagtcattcctcttggtccacaaaacccaaatagta |
308 |
Q |
| |
|
| |||| ||||||||||||| || |||||||||||| |||||||||| | ||||||||||||||| ||||| ||||| | ||||||||||||||||||| |
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|
| T |
20700683 |
ctaagacaacaccttaatctcttctatcacatcctccgccacacaatttagccccttgaaaatcaaatcatttctcttagcccacaaaacccaaatagta |
20700584 |
T |
|
| Q |
309 |
gtatgccaaaccaaccaaaggtctttagtaaccttattagctctcccaccttcactccaacaatctcaaagaacaaataaattaggaggaatt |
401 |
Q |
| |
|
|||||||| ||||||||| || |||| || ||| |||| || |||||||||||||||||||| || ||| ||||||||||||| ||||||||| |
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|
| T |
20700583 |
gtatgccacaccaaccaatggccttttgttaccctatttgcactcccaccttcactccaacattcccaatgaacaaataaatttggaggaatt |
20700491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 192 - 327
Target Start/End: Complemental strand, 47476596 - 47476461
Alignment:
| Q |
192 |
ctttccaacaaccatctccaagatcacaccttaatctcgtcaatcacatcctccaccacacaattaatccccttgaaaatcaagtcattcctcttggtcc |
291 |
Q |
| |
|
|||||||||| ||||||||||||| |||| || || || |||| || ||||||||| || |||| |||||||||| ||| ||||| ||| | ||| |
|
|
| T |
47476596 |
ctttccaacatccatctccaagataacactttgatttcctcaaccaattcctccacctcaaaattcctccccttgaagatcttatcatttctcctattcc |
47476497 |
T |
|
| Q |
292 |
acaaaacccaaatagtagtatgccaaaccaaccaaa |
327 |
Q |
| |
|
||||||||||||| || || ||||||| ||||||| |
|
|
| T |
47476496 |
acaaaacccaaatcgttgtgtgccaaattaaccaaa |
47476461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 145 - 370
Target Start/End: Original strand, 38296939 - 38297163
Alignment:
| Q |
145 |
ttggattccaactccattcatagaagaagcaagacggagtactagacctttccaacaaccatctccaagatcacaccttaatctcgtcaatcacatcctc |
244 |
Q |
| |
|
||||||||||||||||||| || || | |||||||| ||| || ||| |||| || ||| |||||||| ||||||| ||||| |||| || || || |
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|
| T |
38296939 |
ttggattccaactccattcgtaaaaaagacaagacggggtatgagtcctatccagcatccacctccaagacaacacctttatctcttcaaccat-tcatc |
38297037 |
T |
|
| Q |
245 |
caccacacaattaatccccttgaaaatcaagtcattcctcttggtccacaaaacccaaatagtagtatgccaaaccaaccaaaggtctttagtaacctta |
344 |
Q |
| |
|
||| || ||||||||||||| |||||| ||||| ||||| |||||| |||||||| ||||||||||||| ||||||| |||| |||||||| |
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|
| T |
38297038 |
cacgtcaaaattaatccccttaaaaatcttatcatttctcttcttccacatcacccaaatggtagtatgccaaattaaccaaaaacctttggtaaccttt |
38297137 |
T |
|
| Q |
345 |
ttagctctcccaccttcactccaaca |
370 |
Q |
| |
|
|||| ||||||||| |||||||||| |
|
|
| T |
38297138 |
ttaggtctcccaccaacactccaaca |
38297163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 194 - 391
Target Start/End: Complemental strand, 59669 - 59472
Alignment:
| Q |
194 |
ttccaacaaccatctccaagatcacaccttaatctcgtcaatcacatcctccaccacacaattaatccccttgaaaatcaagtcattcctcttggtccac |
293 |
Q |
| |
|
|||||||| ||| |||||||| |||||||||| || || | || || |||||| | |||| |||||||| |||||| |||||| ||||| ||||| |
|
|
| T |
59669 |
ttccaacatccacctccaagacaacaccttaatttcttcgaccaattcatccaccttaaaatttatccccttaaaaatcttgtcatttctctttttccac |
59570 |
T |
|
| Q |
294 |
aaaacccaaatagtagtatgccaaaccaaccaaaggtctttagtaaccttattagctctcccaccttcactccaacaatctcaaagaacaaataaatt |
391 |
Q |
| |
|
| ||||||||| || || ||| || |||||||| ||||||| ||||| ||| ||||||||||| |||||||||| | ||| ||||||| ||||| |
|
|
| T |
59569 |
ataacccaaatggttgtgtgctgaattaaccaaagacctttagttacctttttaactctcccacctacactccaacacttccaatgaacaaagaaatt |
59472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 192 - 348
Target Start/End: Original strand, 31034963 - 31035119
Alignment:
| Q |
192 |
ctttccaacaaccatctccaagatcacaccttaatctcgtcaatcacatcctccaccacacaattaatccccttgaaaatcaagtcattcctcttggtcc |
291 |
Q |
| |
|
|||||||||| | | |||||||| ||||||||||||| ||| || ||||||||| || | || || ||||||||||||| |||||| ||| | ||| |
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|
| T |
31034963 |
ctttccaacatctacctccaagacaacaccttaatctctacaaccaattcctccacctcaaagtttattcccttgaaaatcatgtcatttctcgttttcc |
31035062 |
T |
|
| Q |
292 |
acaaaacccaaatagtagtatgccaaaccaaccaaaggtctttagtaaccttattag |
348 |
Q |
| |
|
|||||||||||||||| || ||| ||| ||||||| ||||||| ||||| |||| |
|
|
| T |
31035063 |
acaaaacccaaatagttgtgtgctaaattaaccaaaaacctttagttacctttttag |
31035119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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