View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0739_low_31 (Length: 285)
Name: NF0739_low_31
Description: NF0739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0739_low_31 |
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Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 27045589 - 27045309
Alignment:
| Q |
1 |
tcaaaaactcgatcgatcacactccgaagacggagcataagcaagattttagcatggacggtagcggtgcggtaacgattctgactgagtggaagcattt |
100 |
Q |
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| T |
27045589 |
tcaaaaactcgatcgatcacactccggagacggagcataagcaagattttagcatggacggtagcggtgcggtaacgattctgactgagtggaagcattt |
27045490 |
T |
|
| Q |
101 |
aggttttgttgatgaaaatagtatagattttggagggtatgaatcagtgaattttgtaccagcaccatgcaacatgtttgcgtctttagaagggtgcatt |
200 |
Q |
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| T |
27045489 |
aggttttgttgatgaaaataatatagattttggagggtatgaatcagtgaattttgtaccagcaccatgcaacatgtttgcgtctttggaagggtgcatt |
27045390 |
T |
|
| Q |
201 |
ttcgcatctcctggtaaacttgatgatgatg-tccatcgatgaaaggaggagttaagatatttacatcactctctgctgct |
280 |
Q |
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| T |
27045389 |
ttcgcatctcctggtaaacttgatgatgatgatccatcaatgaaaggaggagttaagatttttacatcactccctgttgct |
27045309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 66 - 264
Target Start/End: Complemental strand, 27098258 - 27098062
Alignment:
| Q |
66 |
ggtgcggtaacgattctgactgagtggaagcatttaggttttgttgatgaaaatagtatagattttggagggtatgaatcagtgaattttgtaccagcac |
165 |
Q |
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| T |
27098258 |
ggtgcagtaacggttctgacagagtggaaacatttaggttttcttgatggaaatg---tagattttggtgggaacgaagcagtgaatttagtaccagcac |
27098162 |
T |
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| Q |
166 |
catgcaacatgtttgcgtctttagaagggtgcattttcgcatctcctggtaaacttgatgatgatg-tccatcgatgaaaggaggagttaagatatttac |
264 |
Q |
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| T |
27098161 |
catgcaacatgtttgcgtcaattgaaattagcatttttacatctcctaataaatttgacaatgatgatccatcaatgaaaggaggggttaagatttttac |
27098062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 65 - 264
Target Start/End: Complemental strand, 27105258 - 27105061
Alignment:
| Q |
65 |
cggtgcggtaacgattctgactgagtggaagcatttaggttttgttgatgaaaatagtatagattttggagggtatgaatcagtgaattttgtaccagca |
164 |
Q |
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|||||| |||||| ||||||| |||||||| |||||||||||| |||||| |||| |||||||||| ||| ||||| |||||||||| ||||||||| |
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| T |
27105258 |
cggtgcagtaacggttctgacagagtggaaacatttaggttttcttgatggaaatg---tagattttggtgggcatgaagcagtgaatttagtaccagca |
27105162 |
T |
|
| Q |
165 |
ccatgcaacatgtttgcgtctttagaagggtgcattttcgcatctcctggtaaacttgatgatgatg-tccatcgatgaaaggaggagttaagatattta |
263 |
Q |
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| T |
27105161 |
ccatgcaacttgtttgcgtccatggaaatgagcatttttacacctcctaataaatttgacaatgatgatccatctatgaaaggagggattaagattttta |
27105062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 124 - 271
Target Start/End: Complemental strand, 27062411 - 27062263
Alignment:
| Q |
124 |
tagattttggagggtatgaatcagtgaattttgtaccagcaccatgcaacatgtttgcgtctttagaagggtgcattttcgcatctcctggtaaacttga |
223 |
Q |
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||||||||||||| ||||||| |||||||||| |||| ||||||||||| ||| |||| | | || | ||||||||| |||| || ||||||||| |
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| T |
27062411 |
tagattttggaggttatgaattagtgaattttctacctgcaccatgcaagatgcttgccaccgtcgatgcatgcattttctcatcagctaataaacttga |
27062312 |
T |
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| Q |
224 |
tgatgatg-tccatcgatgaaaggaggagttaagatatttacatcactc |
271 |
Q |
| |
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|||| ||| |||||| ||| | |||||||||| ||||||||| |||||| |
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| T |
27062311 |
tgatcatgatccatcaatggatggaggagttaggatatttacttcactc |
27062263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 198 - 280
Target Start/End: Complemental strand, 27041053 - 27040970
Alignment:
| Q |
198 |
attttcgcatctcctggtaaacttgatgatgatg-tccatcgatgaaaggaggagttaagatatttacatcactctctgctgct |
280 |
Q |
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| T |
27041053 |
attttctcatctcctaataaacttgatgatcatgatctatcaatggaaggaggagttaggatatttacatcactccctgttgct |
27040970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 271
Target Start/End: Complemental strand, 27079693 - 27079619
Alignment:
| Q |
198 |
attttcgcatctcctggtaaacttgatgatgatg-tccatcgatgaaaggaggagttaagatatttacatcactc |
271 |
Q |
| |
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|||||| |||||||| ||||||||||||| ||| || || ||| |||||||||||| |||||||||||||||| |
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| T |
27079693 |
attttctcatctcctaataaacttgatgatcatgatctgtcaatggaaggaggagttaggatatttacatcactc |
27079619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 271
Target Start/End: Complemental strand, 27085490 - 27085416
Alignment:
| Q |
198 |
attttcgcatctcctggtaaacttgatgatgatg-tccatcgatgaaaggaggagttaagatatttacatcactc |
271 |
Q |
| |
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|||||| |||||||| ||||||||||||| ||| || || ||| |||||||||||| |||||||||||||||| |
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| T |
27085490 |
attttctcatctcctaataaacttgatgatcatgatctgtcaatggaaggaggagttaggatatttacatcactc |
27085416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 179
Target Start/End: Complemental strand, 19414212 - 19414159
Alignment:
| Q |
126 |
gattttggagggtatgaatcagtgaattttgtaccagcaccatgcaacatgttt |
179 |
Q |
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| T |
19414212 |
gattttggaggatttgaagcagttaattttgtaatagcaccatgcaacatgttt |
19414159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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