View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0739_low_34 (Length: 272)
Name: NF0739_low_34
Description: NF0739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0739_low_34 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 98 - 272
Target Start/End: Complemental strand, 10258907 - 10258733
Alignment:
| Q |
98 |
atgaaggccctccaattctttaggaacgctcatagatctgcgttcaggtgaagcaattgttcctatttcggcattcaccggaacaagagcaccacttttg |
197 |
Q |
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|||||||||||| |||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
10258907 |
atgaaggccctctaattctttaggaacgcacatagatttgcgttcaggtgaagcaaccattcctatttcggcattcaccggaacaagagcaccacttttg |
10258808 |
T |
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| Q |
198 |
ctatctagacccaagaattgatctttatcgaaggaaagatttctagagggcaactgcattgcccattggaccact |
272 |
Q |
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|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10258807 |
ctatctagacccaaaaattgatctttatcaaaggaaagatttctagagggcaactgcattgcccattggaccact |
10258733 |
T |
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