View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0739_low_35 (Length: 271)
Name: NF0739_low_35
Description: NF0739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0739_low_35 |
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| [»] chr3 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 6 - 244
Target Start/End: Original strand, 14720339 - 14720578
Alignment:
| Q |
6 |
ggtatcactaactctcttttggaacaacacaaagatgcttaatttcaacttgaaaatgctttgctaatataagaagattattggagagagaaatctaaac |
105 |
Q |
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| T |
14720339 |
ggtatcactaactctcttttggaacaacacaaagatgctcaatttcaacttgaaaatgctttgctaatataagaagattattggagagagaaatctaaag |
14720438 |
T |
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| Q |
106 |
ttgcttggcgttcaaatggagtcagaaataccaaatattaccacagactaaccaaaat-caaaaatacctccaaactcataactaccctcatgaatggtg |
204 |
Q |
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| T |
14720439 |
ttgcttggtattcaaatggagacagaaataccaaatattaccatagactaaccaaaataaaaaaatacctccaaactcataactaccctcatgaatggtg |
14720538 |
T |
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| Q |
205 |
atgatatggtttaggacccggatcaaatatcaagtctcat |
244 |
Q |
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| T |
14720539 |
atgatatggtttatgacccggatcaaatatcaagtctcat |
14720578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 6 - 270
Target Start/End: Complemental strand, 28187565 - 28187301
Alignment:
| Q |
6 |
ggtatcactaactctcttttggaacaacacaaagatgcttaatttcaacttgaaaatgctttgctaatataagaagattattggagagagaaatctaaac |
105 |
Q |
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| T |
28187565 |
ggtatcactgactccctattggaacaacacagagatgcgcagtttcaacttgaaaatgctttacaaatagaagaagaatattggagggagaaatctaaag |
28187466 |
T |
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| Q |
106 |
ttgcttggcgttcaaatggagtcagaaataccaaatattaccacagactaaccaaaatcaaaaatacctccaaactcataactaccctcatgaatggtga |
205 |
Q |
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| T |
28187465 |
ttgcttggcatttaaatggagataggaacaccaaatattaccatagactaaccaaaatcaaaaacacctccaaactcgtaactaccctcatgaatggtga |
28187366 |
T |
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| Q |
206 |
tgatatggtttaggacccggatcaaatatcaagtctcatcacaaatcactttaaaaatatttttg |
270 |
Q |
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| T |
28187365 |
tgatatggtttacaaccctgaggaaatatcaagtctcattactaaccactttaaaaatatttttg |
28187301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 129 - 269
Target Start/End: Complemental strand, 19217059 - 19216919
Alignment:
| Q |
129 |
agaaataccaaatattaccacagactaaccaaaatcaaaaatacctccaaactcataactaccctcatgaatggtgatgatatggtttaggacccggatc |
228 |
Q |
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| T |
19217059 |
agaaacaccaagtttttccatagactatccaaaatcagaaactcttctaaactcattaacagcctcatgaatggtgatgacatggttactgacccggagg |
19216960 |
T |
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| Q |
229 |
aaatatcaagtctcatcacaaatcactttaaaaatattttt |
269 |
Q |
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| T |
19216959 |
aaatatcaagtctcattacaaatcactttaaaaatattttt |
19216919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 121 - 186
Target Start/End: Original strand, 12114273 - 12114338
Alignment:
| Q |
121 |
atggagtcagaaataccaaatattaccacagactaaccaaaatcaaaaatacctccaaactcataa |
186 |
Q |
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| T |
12114273 |
atggagacagaaacaccaaatatttccacagactaaccaaaaaaaaacacacctccaaactcataa |
12114338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 184
Target Start/End: Complemental strand, 18924293 - 18924187
Alignment:
| Q |
78 |
gaagattattggagagagaaatctaaacttgcttggcgttcaaatggagtcagaaataccaaatattaccacagactaaccaaaatcaaaaatacctcca |
177 |
Q |
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| T |
18924293 |
gaagatttttggagagaaaaatctaaggtagcttggcatgctaatggggacagaaacactcgatacttccaaagactaaccaaaatcaaaaacacctcta |
18924194 |
T |
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| Q |
178 |
aactcat |
184 |
Q |
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| T |
18924193 |
aactcat |
18924187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 27 - 271
Target Start/End: Original strand, 7572684 - 7572928
Alignment:
| Q |
27 |
gaacaacacaaagatgcttaatttcaacttgaaaatgctttgctaatataagaagattattggagagagaaatctaaacttgcttggcgttcaaatggag |
126 |
Q |
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| T |
7572684 |
gaacaacacaaagatgcgcagtttcaacttgaaaatgctttacaattagaagaagaatattggagggagaaatctaaagttacttggcatttaaatggag |
7572783 |
T |
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| Q |
127 |
tcagaaataccaaatattaccacagactaaccaaaatcaaaaatacctccaaactcataactaccctcatgaatggtgatgatatggtttaggacccgga |
226 |
Q |
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| T |
7572784 |
atagaaacaccaaatattaccatagactgaccaaaatcaaaaacacctccaaactgataactaccctcatgaatgatgatgatatagtttatgaccctga |
7572883 |
T |
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| Q |
227 |
tcaaatatcaagtctcatcacaaatcactttaaaaatatttttgc |
271 |
Q |
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| T |
7572884 |
ggaaatatcaagtctcattacaaatcacttcaaaaatatttttgc |
7572928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 76 - 269
Target Start/End: Original strand, 10009964 - 10010157
Alignment:
| Q |
76 |
aagaagattattggagagagaaatctaaacttgcttggcgttcaaatggagtcagaaataccaaatattaccacagactaaccaaaatcaaaaatacctc |
175 |
Q |
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||||||| |||||||| |||||||| ||| ||||||||| ||| | |||| ||||||||||||| | |||| |||| ||||||||||||| || || |
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| T |
10009964 |
aagaagaatattggagggagaaatccaaagttgcttggcactcagaaggagatcgaaataccaaatactttcacaaactatccaaaatcaaaaacacttc |
10010063 |
T |
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| Q |
176 |
caaactcataactaccctcatgaatggtgatgatatggtttaggacccggatcaaatatcaagtctcatcacaaatcactttaaaaatattttt |
269 |
Q |
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| T |
10010064 |
caaactcataaatagcctcatgattggtgataacatggtttctgatccacaacaaatatcaagtcacatcacagatcattttaaaaatattttt |
10010157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 147 - 271
Target Start/End: Original strand, 22562032 - 22562156
Alignment:
| Q |
147 |
cacagactaaccaaaatcaaaaatacctccaaactcataactaccctcatgaatggtgatgatatggtttaggacccggatcaaatatcaagtctcatca |
246 |
Q |
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|||||||| ||||||||||||| || ||||||||||||| || |||||||||||||||| | ||| || || | || |||| ||||||| ||||| |
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| T |
22562032 |
cacagactggccaaaatcaaaaacacatccaaactcataaatagcctcatgaatggtgataacatgattactgatctagaggaaatttcaagtcacatca |
22562131 |
T |
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| Q |
247 |
caaatcactttaaaaatatttttgc |
271 |
Q |
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|||||||||| |||||||||||||| |
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| T |
22562132 |
caaatcacttcaaaaatatttttgc |
22562156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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