View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0739_low_48 (Length: 251)
Name: NF0739_low_48
Description: NF0739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0739_low_48 |
 | |
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| [»] scaffold0425 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 13 - 248
Target Start/End: Original strand, 6555370 - 6555605
Alignment:
| Q |
13 |
aatatgggaaagctaaataatcttcagaccctgtcatattttattgtggaagcccataatgaatctgatctcaaagatttggcaaaactcaaccatcttc |
112 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6555370 |
aatatgggaaagctaaataatcttcagaccttgtcatattttattgtggaagcccataatgaatctgatctcaaagatttggcaaaactcaaccatcttc |
6555469 |
T |
|
| Q |
113 |
atggaacaattcatattaaagggttgggtaatgtcagtgatactgcagatgctgccacattaaatttgaaagatatagaagaattacatactgagttcaa |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6555470 |
atggaacaattcatattaaagggttgggtaatgtcagtgatactgcagatgctgccacattaaatttgaaagatatagaagaattacatactgagttcaa |
6555569 |
T |
|
| Q |
213 |
tggcggacgagaagaaatggctgaaagtaacctgtt |
248 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
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|
| T |
6555570 |
tggcggacgagaagaaatggctgaaagtaacctgtt |
6555605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 13 - 251
Target Start/End: Original strand, 6521064 - 6521302
Alignment:
| Q |
13 |
aatatgggaaagctaaataatcttcagaccctgtcatattttattgtggaagcccataatgaatctgatctcaaagatttggcaaaactcaaccatcttc |
112 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6521064 |
aatatgggaaagctaagtaatcttcagaccctgtcatattttattgtggaagcccataatgaatctgatctcaaagatttggcaaaactcaaccatcttc |
6521163 |
T |
|
| Q |
113 |
atggaacaattcatattaaagggttgggtaatgtcagtgatactgcagatgctgccacattaaatttgaaagatatagaagaattacatactgagttcaa |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
6521164 |
atggaacaattcatattaaagggttgggtaatgttagtgatactgcagatgctgccacattaaatttgaaagatatagaagaattacatacagagttcaa |
6521263 |
T |
|
| Q |
213 |
tggcggacgagaagaaatggctgaaagtaacctgttagt |
251 |
Q |
| |
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||||||| ||||||||||||||||||| ||||||||||| |
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|
| T |
6521264 |
tggcggaagagaagaaatggctgaaagcaacctgttagt |
6521302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 13 - 251
Target Start/End: Original strand, 6527804 - 6528042
Alignment:
| Q |
13 |
aatatgggaaagctaaataatcttcagaccctgtcatattttattgtggaagcccataatgaatctgatctcaaagatttggcaaaactcaaccatcttc |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6527804 |
aatatgggaaagctaaataatcttcagaccttgtcatattttattgtggaagcccataatgaatctgatctcaaagatttggcaaaactcaaccatcttc |
6527903 |
T |
|
| Q |
113 |
atggaacaattcatattaaagggttgggtaatgtcagtgatactgcagatgctgccacattaaatttgaaagatatagaagaattacatactgagttcaa |
212 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |
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| T |
6527904 |
atggaacaattcatattaaaggcttgggtaatgtcagtgatactgcagatgctgccccattaaatttgaaagatatagaagaattgcatactgagttcaa |
6528003 |
T |
|
| Q |
213 |
tggcggacgagaagaaatggctgaaagtaacctgttagt |
251 |
Q |
| |
|
||||||| ||||||||||||||||||| ||||||||||| |
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|
| T |
6528004 |
tggcggaagagaagaaatggctgaaagcaacctgttagt |
6528042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 14 - 239
Target Start/End: Complemental strand, 6735065 - 6734831
Alignment:
| Q |
14 |
atatgggaaagctaaataatcttcagaccctgtcatattttattgtggaagcccataatgaatctgatctcaaagatttggcaaaactcaaccatcttca |
113 |
Q |
| |
|
|||||||||||||||| |||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
6735065 |
atatgggaaagctaaacaatcttcaaagcctatcatattttattgtggaagcccataatgaatctgatctcaaagatttggcaaaactcaaccagcttca |
6734966 |
T |
|
| Q |
114 |
tggaacaattcatattaaagggttgggtaatgtcagtgatactgcagatgctgccacattaaatttgaaagata---------tagaagaattacatact |
204 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||||||| ||||||||||||| | |
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|
| T |
6734965 |
tggaacaattcatattaaagggctgggtaatgtcagtgatcctgcagatgctgccacatcaaatttgaaagataagaagtatttagaagaattacaaatg |
6734866 |
T |
|
| Q |
205 |
gagttcaatggcggacgagaagaaatggctgaaag |
239 |
Q |
| |
|
||||||||||||||| |||||||||||| |||||| |
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| T |
6734865 |
gagttcaatggcggaagagaagaaatggatgaaag |
6734831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 18 - 187
Target Start/End: Complemental strand, 8453761 - 8453592
Alignment:
| Q |
18 |
gggaaagctaaataatcttcagaccctgtcatattttattgtggaagcccataatgaatctgatctcaaagatttggcaaaactcaaccatcttcatgga |
117 |
Q |
| |
|
|||||||||||| |||||||| | | ||||||||||||||||||||| || |||| ||||||||| ||||| ||||||||||| ||||||||||||||| |
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|
| T |
8453761 |
gggaaagctaaacaatcttcaaagcttgtcatattttattgtggaagagcagaatgtatctgatcttaaagagttggcaaaactaaaccatcttcatgga |
8453662 |
T |
|
| Q |
118 |
acaattcatattaaagggttgggtaatgtcagtgatactgcagatgctgccacattaaatttgaaagata |
187 |
Q |
| |
|
||||| ||||| |||||||||||||||| || ||| ||||||| |||| || ||||||||||||||| |
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|
| T |
8453661 |
gcaattgatattgaagggttgggtaatgttagcgatcttgcagattctgctactgtaaatttgaaagata |
8453592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 14 - 167
Target Start/End: Complemental strand, 6946401 - 6946248
Alignment:
| Q |
14 |
atatgggaaagctaaataatcttcagaccctgtcatattttattgtggaagcccataatgaatctgatctcaaagatttggcaaaactcaaccatcttca |
113 |
Q |
| |
|
|||| ||||| ||||| ||||||||| || | | |||||||||||||||| || ||||| |||||||| || || |||| ||||| ||||||||||| |
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|
| T |
6946401 |
atataggaaatctaaacaatcttcaggccttaccttattttattgtggaagagcagaatgagtctgatcttaaggagttggggaaactaaaccatcttca |
6946302 |
T |
|
| Q |
114 |
tggaacaattcatattaaagggttgggtaatgtcagtgatactgcagatgctgc |
167 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| | |||| ||||||||||||| |
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|
| T |
6946301 |
tggaacaattgatattaaagggttgggtaatgtgattgatcctgcagatgctgc |
6946248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 123
Target Start/End: Original strand, 6480885 - 6480994
Alignment:
| Q |
14 |
atatgggaaagctaaataatcttcagaccctgtcatattttattgtggaagcccataatgaatctgatctcaaagatttggcaaaactcaaccatcttca |
113 |
Q |
| |
|
|||| ||||||||||| | |||||| || ||| | |||||| ||||||||| | |||| ||||||||||||||| |||| |||||| ||||||||||| |
|
|
| T |
6480885 |
atataggaaagctaaacagtcttcaaacactgccttattttgttgtggaagagaaaaatggatctgatctcaaagagttggaaaaactaaaccatcttca |
6480984 |
T |
|
| Q |
114 |
tggaacaatt |
123 |
Q |
| |
|
||||| |||| |
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|
| T |
6480985 |
tggaaaaatt |
6480994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 103 - 187
Target Start/End: Complemental strand, 8588778 - 8588694
Alignment:
| Q |
103 |
aaccatcttcatggaacaattcatattaaagggttgggtaatgtcagtgatactgcagatgctgccacattaaatttgaaagata |
187 |
Q |
| |
|
|||||||||||||| | ||||||||| ||||| ||||||||||| | |||| |||||||||||| ||| ||||||||||||| |
|
|
| T |
8588778 |
aaccatcttcatgggaaaattcatataaaaggtttgggtaatgtaattgatcctgcagatgctgtgacagccaatttgaaagata |
8588694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0425 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: scaffold0425
Description:
Target: scaffold0425; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 13 - 239
Target Start/End: Original strand, 8409 - 8644
Alignment:
| Q |
13 |
aatatgggaaagctaaataatcttcagaccctgtcatattttattgtggaagcccataatgaatctgatctcaaagatttggcaaaactcaaccatcttc |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8409 |
aatatgggaaagctaaataatcttcagaccatgtcatattttattgtggaagcccataatgaatctgatctcaaagatttggcaaaactcaaccatcttc |
8508 |
T |
|
| Q |
113 |
atggaacaattcatattaaagggttgggtaatgtcagtgatactgcagatgctgccacattaaatttgaaagata---------tagaagaattacatac |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |||||||||| || | |
|
|
| T |
8509 |
atggaacaattcatattaaagggttgggtaatgtcagtgatcctgcagatgctgccacatcaaatttgaaagataagaagtatttagaagaatttcaaat |
8608 |
T |
|
| Q |
204 |
tgagttcaatggcggacgagaagaaatggctgaaag |
239 |
Q |
| |
|
||||||||||||||| |||||||||||| |||||| |
|
|
| T |
8609 |
ggagttcaatggcggaagagaagaaatggatgaaag |
8644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 14 - 187
Target Start/End: Original strand, 2623675 - 2623847
Alignment:
| Q |
14 |
atatgggaaagctaaataatcttcagaccctgtcatattttattgtggaagcccataatgaatctgatctcaaagatttggcaaaactcaaccatcttca |
113 |
Q |
| |
|
|||||||||||||||| |||||||| | | ||| ||||||||||| ||||| ||||||| ||||||||| ||||| |||||||||| |||||| |||| |
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|
| T |
2623675 |
atatgggaaagctaaacaatcttcaaagcatgttatattttattggggaagagcataatggatctgatcttaaagagttggcaaaacaaaaccat-ttca |
2623773 |
T |
|
| Q |
114 |
tggaacaattcatattaaagggttgggtaatgtcagtgatactgcagatgctgccacattaaatttgaaagata |
187 |
Q |
| |
|
|||||||||||||||| |||| |||| ||||||||| ||| |||||||||||| ||| ||||||||||||||| |
|
|
| T |
2623774 |
tggaacaattcatattgaaggcttggataatgtcagcgatcttgcagatgctgctacagtaaatttgaaagata |
2623847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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