View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0739_low_53 (Length: 245)
Name: NF0739_low_53
Description: NF0739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0739_low_53 |
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Alignment Details
Target: chr4 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 34687149 - 34687306
Alignment:
| Q |
1 |
tatcaagagaatattcaagaggaagcgatgaatatgatgcacatgcaccaacaagacccacaatttaattttggtgtcacgacaacttcaagtaatgatg |
100 |
Q |
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| T |
34687149 |
tatcaagagaatattcaagaggaagcgatgaatatgatgcacatgcaccaacaagacccacaatttaattttggtgtcacgacaacttcaagtaatgatg |
34687248 |
T |
|
| Q |
101 |
attcaactgattttgctcctctacctccggccattgacatgagtgcacctgatgatgt |
158 |
Q |
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| T |
34687249 |
attcaactgatcttgctcctctacctccggccattgacatgagtgcacctgttgatgt |
34687306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 2 - 156
Target Start/End: Original strand, 34695076 - 34695233
Alignment:
| Q |
2 |
atcaagagaatattcaagaggaagcgatgaatatgatgcacatgcaccaacaagacccacaatttaattttggtgtcacgacaacttcaagtaatgatg- |
100 |
Q |
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| T |
34695076 |
atcaagagaatattcaagaggagtcgattcatatgatgcatatgcatcaacaagacccacaacttaattttggtgtcacgacagcttcaagtaatgatga |
34695175 |
T |
|
| Q |
101 |
--attcaactgattttgctcctctacctccggccattgacatgagtgcacctgatgat |
156 |
Q |
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| T |
34695176 |
tcattcaactgatcttgctcctctccctccggccattgacatgagtgcacctgctgat |
34695233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 2 - 102
Target Start/End: Original strand, 8285050 - 8285150
Alignment:
| Q |
2 |
atcaagagaatattcaagaggaagcgatgaatatgatgcacatgcaccaacaagacccacaatttaattttggtgtcacgacaacttcaagtaatgatga |
101 |
Q |
| |
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|||||||||| |||||||||||||| ||||||||||| |||||| |||| |||||||||||| ||||||||||||| | ||||| ||||| |||||||| |
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| T |
8285050 |
atcaagagaagattcaagaggaagcaatgaatatgattcacatgtaccagcaagacccacaacttaattttggtgttgctacaacatcaagcaatgatga |
8285149 |
T |
|
| Q |
102 |
t |
102 |
Q |
| |
|
| |
|
|
| T |
8285150 |
t |
8285150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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