View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0739_low_54 (Length: 245)
Name: NF0739_low_54
Description: NF0739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0739_low_54 |
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Alignment Details
Target: chr4 (Bit Score: 141; Significance: 5e-74; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 34687173 - 34687025
Alignment:
| Q |
1 |
cttcctcttgaatattctcttgataaaaaagatcatggactgagtagattccattttcattttcattgttcatgatgtcatcataattcagcagaggcag |
100 |
Q |
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| T |
34687173 |
cttcctcttgaatattctcttgataaaaaagatcatggactgagtagattccattttcattttcattgttcatgatgttatcataattcagcagaggcag |
34687074 |
T |
|
| Q |
101 |
atcaacattttgttgaggtgagggttcgatcatattcgggaaatcagag |
149 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
34687073 |
atcaacattttgttgaggtgagggttcaatcatattcgggaaatcagag |
34687025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 3 - 119
Target Start/End: Complemental strand, 34695097 - 34694981
Alignment:
| Q |
3 |
tcctcttgaatattctcttgataaaaaagatcatggactgagtagattccattttcattttcattgttcatgatgtcatcataattcagcagaggcagat |
102 |
Q |
| |
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|||||||||||||||||||||| |||||| |||| || |||| |||||||||||| ||| ||| ||||||||||| ||||||||| || |||||||||| |
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| T |
34695097 |
tcctcttgaatattctcttgatcaaaaaggtcattgattgagcagattccatttttgtttccatagttcatgatgttatcataattaagtagaggcagat |
34694998 |
T |
|
| Q |
103 |
caacattttgttgaggt |
119 |
Q |
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||||||||| ||||||| |
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| T |
34694997 |
caacattttcttgaggt |
34694981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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