View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0739_low_56 (Length: 239)
Name: NF0739_low_56
Description: NF0739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0739_low_56 |
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Alignment Details
Target: chr6 (Bit Score: 141; Significance: 5e-74; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 1696345 - 1696126
Alignment:
| Q |
1 |
tttattttcactttttctcataatcgattatcatgcacgcatgcataaagtataatgtgaactttt-ctgataattgattttagaagtctttagttcagt |
99 |
Q |
| |
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|||||||| ||||||| |||||||||||||||||||| |||||||||||||||||| | ||||||| |||||||| |||||| ||||| ||||||||||| |
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| T |
1696345 |
tttattttaactttttatcataatcgattatcatgcatgcatgcataaagtataattttaactttttctgataatcgattttggaagtttttagttcagt |
1696246 |
T |
|
| Q |
100 |
tacgattgattttagctttttatgttaatcgattaatcatacatgtttctgattgannnnnnnnnctgaaatttgaatgcagggaatgttatctcgtttg |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
1696245 |
tacgattgattttagctttttatgttaatcgattaatcatacatgtttctgattgatttttg----tgaaatttgaatgcagggaatgttatctcgtttg |
1696150 |
T |
|
| Q |
200 |
gactgttcttcgcaccagggtaat |
223 |
Q |
| |
|
||||||||||| |||||| ||||| |
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|
| T |
1696149 |
gactgttcttctcaccagcgtaat |
1696126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 1685799 - 1685578
Alignment:
| Q |
1 |
tttattttcactttttctcataatcgattatcatgcacgcatgcataaagtataatgtgaactttt-ctgataattgattttagaagtctttagttcagt |
99 |
Q |
| |
|
|||||||| ||||||| |||||||||||||||||||| |||||||||||||||||| | ||||||| |||||||| |||||| ||||| ||||||||||| |
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|
| T |
1685799 |
tttattttaactttttatcataatcgattatcatgcatgcatgcataaagtataattttaactttttctgataatcgatttttgaagtttttagttcagt |
1685700 |
T |
|
| Q |
100 |
tacgattgattttagctttttatgttaatcgattaatcatacatgtttctgattgannnnnnnnnctgaaa-tttgaatgcagggaatgttatctcgttt |
198 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||| |
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| T |
1685699 |
tacgattgattttagctttttgtgttaatcgattaatcatacatgtttctgattga--tttttttctgaaattttgaatgaagggaatgttatctcgttt |
1685602 |
T |
|
| Q |
199 |
ggactgttcttcgcaccagggtaa |
222 |
Q |
| |
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|||||||||||||||||||||||| |
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|
| T |
1685601 |
ggactgttcttcgcaccagggtaa |
1685578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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