View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0739_low_6 (Length: 486)
Name: NF0739_low_6
Description: NF0739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0739_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 6 - 457
Target Start/End: Complemental strand, 28819206 - 28818736
Alignment:
| Q |
6 |
ctccaacaatatcaccaataatggcccttttcttacttgaacctcctgcaagataagaaaacacagttaaccttagttccaaatcatctactgtcttaga |
105 |
Q |
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| T |
28819206 |
ctccaacaacaccaccaataatggcccttttcttacttgaacctcctgcaagataagaaaacacagttaaccttagttccaaatcatctactgtcttaga |
28819107 |
T |
|
| Q |
106 |
tgttagtatacaaagtgtaagcaccaactttgccattttaaccaaaatatactcaataggagaactagttctcgaaattgtaagcatttcaccttttttg |
205 |
Q |
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| T |
28819106 |
tgttagtatacaaagtgtaagcaccaactttgccattttaaccaaaatatactcaataggagaattagttctcgaaattgtaagcatttcaccttttttg |
28819007 |
T |
|
| Q |
206 |
caaattgacaaataaatcactgaaaaaattgtagattataggtcaaaataggctctcaattggcttttatcgttagagaatagagactatggttttacaa |
305 |
Q |
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| T |
28819006 |
caaattgacaaataaatcacttaaaaaattgtagattataggtcaaaataggctctcaattggcttttatcgttagagaatagagactacggtgttacaa |
28818907 |
T |
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| Q |
306 |
cttacaagttaacttagtatgtggcccgttcaggctggccctgcatcaatgtcaccccaccagggactaatttgcgtatgacaatag------------- |
392 |
Q |
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| T |
28818906 |
cttacaagttaacttagtatgtggcccgttcaggctggccctgcatcaatgtcaccccaccagggactaatttgtgtatgacaataggtctttcatggac |
28818807 |
T |
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| Q |
393 |
------accatgcataattgcaattacaaataaatttatatctcagaccacttaaatttcaaaggtaaatt |
457 |
Q |
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| T |
28818806 |
tatttaaccatgcataattgcaattacaaataaatttatatctcagaccacttaaatttcaaaggtaaatt |
28818736 |
T |
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