View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0739_low_9 (Length: 465)
Name: NF0739_low_9
Description: NF0739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0739_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 168; Significance: 7e-90; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 197 - 393
Target Start/End: Complemental strand, 54655855 - 54655659
Alignment:
| Q |
197 |
caacacctattaagaatttaagtatgaaattgaaaggtatgtacaataattgacagacattaatatcaaaccaaaagaataaataaccaattgtttattc |
296 |
Q |
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| T |
54655855 |
caacacctattaagaatttaaatatgaaattgaaaggtatgtacaataattgacagacattaatatcaaaccaaaagaataaataaccaattgttttttc |
54655756 |
T |
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| Q |
297 |
tcatacannnnnnnataacattattctcatactaatttatacacactaattgaggacatgctgatcacagcattggtgggtttactatatgatgatg |
393 |
Q |
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| T |
54655755 |
tcatacatttttttataacattattctcatactaatttatacacactaattgaggacatgctgatcacagcattggtgggtttactatatgatgatg |
54655659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 30 - 173
Target Start/End: Complemental strand, 54656212 - 54656069
Alignment:
| Q |
30 |
ccatcaactcaacacaaaaacattcatttgatatatatcctcacctcacctgcaaatgatgcaatgtctttgggaagtcaccatctgacccgcgtgctaa |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54656212 |
ccatcaactcaacacaaaaacattcatttgatatatatcctcacctcacctgcaaatgatgcaatgtctttgggaagtcaccatctgacccgcgtgctaa |
54656113 |
T |
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| Q |
130 |
gaaacttctgattttgatcatatgatgatatgcacctaccaata |
173 |
Q |
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| T |
54656112 |
gaaacttctgattttgatcatatgatgatatgcacctaccaata |
54656069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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