View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0740_high_103 (Length: 261)
Name: NF0740_high_103
Description: NF0740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0740_high_103 |
 | |
|
| [»] scaffold0017 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 183; Significance: 4e-99; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 17068618 - 17068850
Alignment:
| Q |
1 |
ctaatgatgtttagctatattctatctaatttgtgcggaaaaaatatgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17068618 |
ctaatgatgtttagctatattctatctaatttgtgcggaaaaaatatgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcat |
17068717 |
T |
|
| Q |
101 |
catttttagttatgtgtatacattgtgcacttatactgttaattttaaatttaattttttaataa-----------cgtatcgtatcgggaattttgaaa |
189 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
17068718 |
catttttagttatgtttatacattgtgcacttatactattaattttaaatttaattttttaataacgtatcgaggccgtatcgtatcgggaattttgaaa |
17068817 |
T |
|
| Q |
190 |
attttcctatatcgccatatcggtatcgtatcg |
222 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |
|
|
| T |
17068818 |
attttcctgtatcgccatatcggtatcgtatcg |
17068850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 17579655 - 17579423
Alignment:
| Q |
1 |
ctaatgatgtttagctatattctatctaatttgtgcggaaaaaatatgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17579655 |
ctaatgatgtttagctatattctatctaatttgtgcggaaaaaatatgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcat |
17579556 |
T |
|
| Q |
101 |
catttttagttatgtgtatacattgtgcacttatactgttaattttaaatttaattttttaataacgt-----------atcgtatcgggaattttgaaa |
189 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
17579555 |
catttttagttatgtttatacattgtgcacttatactattaattttaaatttaattttttaataacgtatcgaggccgtatcgtatcgggaattttgaaa |
17579456 |
T |
|
| Q |
190 |
attttcctatatcgccatatcggtatcgtatcg |
222 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |
|
|
| T |
17579455 |
attttcctgtatcgccatatcggtatcgtatcg |
17579423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 20289782 - 20290014
Alignment:
| Q |
1 |
ctaatgatgtttagctatattctatctaatttgtgcggaaaaaatatgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20289782 |
ctaatgatgtttagctatattctatctaatttgtgcggaaaaaatatgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcat |
20289881 |
T |
|
| Q |
101 |
catttttagttatgtgtatacattgtgcacttatactgttaattttaaatttaattttttaataa-----------cgtatcgtatcgggaattttgaaa |
189 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
20289882 |
catttttagttatgtttatacattgtgcacttatactattaattttaaatttaattttttaataacgtatcgaggccgtatcgtatcgggaattttgaaa |
20289981 |
T |
|
| Q |
190 |
attttcctatatcgccatatcggtatcgtatcg |
222 |
Q |
| |
|
||||||| || |||| |||||||||||||||| |
|
|
| T |
20289982 |
attttcccgtaccgccgtatcggtatcgtatcg |
20290014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 21076412 - 21076644
Alignment:
| Q |
1 |
ctaatgatgtttagctatattctatctaatttgtgcggaaaaaatatgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21076412 |
ctaatgatgtttagctatattctatctaatttgtgcggaaaaaatatgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcat |
21076511 |
T |
|
| Q |
101 |
catttttagttatgtgtatacattgtgcacttatactgttaattttaaatttaattttttaataa-----------cgtatcgtatcgggaattttgaaa |
189 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
21076512 |
catttttagttatgtttatacattgtgcacttatactattaattttaaatttaattttttaataacgtatcgaggccgtatcgtatcgggaattttgaaa |
21076611 |
T |
|
| Q |
190 |
attttcctatatcgccatatcggtatcgtatcg |
222 |
Q |
| |
|
||||||| || |||| |||||||||||||||| |
|
|
| T |
21076612 |
attttcccgtaccgccgtatcggtatcgtatcg |
21076644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 29055008 - 29055238
Alignment:
| Q |
1 |
ctaatgatgtttagctatattctatctaatttgtgcggaaaaaatatgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29055008 |
ctaatgatgtttagctatattctatctaatttgtgcggaaaaaatatgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcat |
29055107 |
T |
|
| Q |
101 |
catttttagttatgtgtatacattgtgcacttatactgttaattttaaatttaattttttaataa-----------cgtatcgtatcgggaattttgaaa |
189 |
Q |
| |
|
||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
29055108 |
catttttagttatgtttatacattatgcacttatactattaattttaaatttaattttttaataacgtatcaaggccgtatcgtatcgggaattttgaaa |
29055207 |
T |
|
| Q |
190 |
attttcctatatcgccatatcggtatcgtat |
220 |
Q |
| |
|
||||||| ||||||| |||||||||||||| |
|
|
| T |
29055208 |
attttcccgtatcgccgtatcggtatcgtat |
29055238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 34964381 - 34964180
Alignment:
| Q |
1 |
ctaatgatgtttagctatattctatctaatttgtgcggaaaaaatatgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcat |
100 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34964381 |
ctaatgatgtttaactatattctatctaatttgtgcggaaaaaatatgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcat |
34964282 |
T |
|
| Q |
101 |
catttttagttatgtgtatacattgtgcacttatactgttaattttaaatttaattttttaataacgtat------cgtatcgggaattttgaaaatttt |
194 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
34964281 |
catttttagttatgtttatacattgtgcacttatactattaattttaaatttaatattttaataacgtatcgaggccgtatcgggaattttgaaaatttt |
34964182 |
T |
|
| Q |
195 |
cc |
196 |
Q |
| |
|
|| |
|
|
| T |
34964181 |
cc |
34964180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 10861442 - 10861271
Alignment:
| Q |
1 |
ctaatgatgtttagctatattctatctaatttgtgcggaaaaaatatgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10861442 |
ctaatgatgtttagctatattctatctaatttgtgcggaaaaaacatgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcat |
10861343 |
T |
|
| Q |
101 |
catttttagttatgtgtatacattgtgcacttatactgttaattttaaatttaattttttaataacgtatcg |
172 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
10861342 |
catttttagttatgtttatacattgtgcacttatactattaattttaaatttaattttttaataacgtatcg |
10861271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 17630795 - 17630626
Alignment:
| Q |
1 |
ctaatgatgtttagctatattctatctaatttgtgcggaaaaaatatgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17630795 |
ctaatgatgtttagctatattctatctaatttgtgcagaaaaaatatgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcat |
17630696 |
T |
|
| Q |
101 |
catttttagttatgtgtatacattgtgcacttatactgttaattttaaatttaattttttaataacgtat |
170 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
17630695 |
catttttagttatgtttatacattgtgcacttatactattaattttaaatttaattttttaataacgtat |
17630626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 3046404 - 3046236
Alignment:
| Q |
1 |
ctaatgatgtttagctatattctatctaatttgtgcggaaaaaatatgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcat |
100 |
Q |
| |
|
||||||||| |||| | ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||| || |
|
|
| T |
3046404 |
ctaatgatgcttagttgtattctatctaatttgtgctgaaaaaatatgtaattatcacttgttttgatcattttcattaatgtgaacgtttttttattat |
3046305 |
T |
|
| Q |
101 |
catttttagttatgtgtatacattgtgcacttatactgttaattttaaatttaattttttaataacgtatcg |
172 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
3046304 |
catttttagttat---tatacattgtgcacttatactattaattttaaatttaattttttaataacgtatcg |
3046236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 44718204 - 44718036
Alignment:
| Q |
1 |
ctaatgatgtttagctatattctatctaatttgtgcggaaaaaatatgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcat |
100 |
Q |
| |
|
|||||||| |||||||||||| || |||||||| |||||||||||||||||||||||||| |||||||||| ||| |||| ||||||||||||| || |
|
|
| T |
44718204 |
ctaatgatatttagctatatttta----atttgtgcagaaaaaatatgtaattgtcacttgttctgatcatttttatttatgtaaatgtttgtttattat |
44718109 |
T |
|
| Q |
101 |
catttttagttatgtgtatacattgtgcacttatactgttaattttaaatttaattttttaataacgtatcgt |
173 |
Q |
| |
|
||||||||||||||| |||||||||| |||||||||| || ||||||||||||| ||||||||||||||||| |
|
|
| T |
44718108 |
catttttagttatgtttatacattgtacacttatactaatagttttaaatttaatcttttaataacgtatcgt |
44718036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 170; Significance: 3e-91; HSPs: 22)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 39580336 - 39580563
Alignment:
| Q |
1 |
ctaatgatgtttagctatattctatctaatttgtgcggaaaaaatatgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39580336 |
ctaatgatgtttagctatattctatctaatttgtgcggaaaaaatatgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcat |
39580435 |
T |
|
| Q |
101 |
catttttagttatgtgtatacattgtgcacttatactgttaattttaaatttaattttttaataa-----------cgtatcgtatcgggaattttgaaa |
189 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
39580436 |
catttttagttatgtttatacattgtgcacttatactattaattttaaatttaattttttaataacgtatcgaggccgtatcgtatcggaaattttgaaa |
39580535 |
T |
|
| Q |
190 |
attttcctatatcgccatatcggtatcg |
217 |
Q |
| |
|
||||||| |||||||| ||||||||||| |
|
|
| T |
39580536 |
attttcccatatcgccgtatcggtatcg |
39580563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 959290 - 959518
Alignment:
| Q |
1 |
ctaatgatgtttagctatattctatctaatttgtgcggaaaaaatatgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
959290 |
ctaatgatgtttagctatattctatctaatttgtgcggaaaaaatatgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcat |
959389 |
T |
|
| Q |
101 |
catttttagttatgtgtatacattgtgcacttatactgttaattttaaatttaattttttaataa-----------cgtatcgtatcgggaattttgaaa |
189 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
959390 |
catttttagttatgtttatacattgtgcacttatactattaattttaaatttaattttttaataacatatcgaggccgtatcgtatcggaaattttgaaa |
959489 |
T |
|
| Q |
190 |
attttcctatatcgccatatcggtatcgt |
218 |
Q |
| |
|
|||||||| |||||| |||||||||||| |
|
|
| T |
959490 |
attttcctgtatcgctgtatcggtatcgt |
959518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 39674600 - 39674771
Alignment:
| Q |
1 |
ctaatgatgtttagctatattctatctaatttgtgcggaaaaaatatgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39674600 |
ctaatgatgtttagctatattctatctaatttgtgcggaaaaaatatataattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcat |
39674699 |
T |
|
| Q |
101 |
catttttagttatgtgtatacattgtgcacttatactgttaattttaaatttaattttttaataacgtatcg |
172 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
39674700 |
catttttagttatgtttatacattgtgcacttatactattaattttaaatttaaatttttaataacgtatcg |
39674771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 42864708 - 42864877
Alignment:
| Q |
1 |
ctaatgatgtttagctatattctatctaatttgtgcggaaaaaatatgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
42864708 |
ctaatgatgtttagctatattctatctaatttgtgcggaaaaaatatgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatctt |
42864807 |
T |
|
| Q |
101 |
catttttagttatgtgtatacattgtgcacttatactgttaattttaaatttaattttttaataacgtatcg |
172 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
42864808 |
catttttagttatgtttatacattgtgcac--atactattaattttaaatttaattttttaataacgtatcg |
42864877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 25041781 - 25041949
Alignment:
| Q |
1 |
ctaatgatgtttagctatattctatctaatttgtgcggaaaaaatatgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
25041781 |
ctaatgatgtttagctatattctatctaatttgtgcggaaaa-atatgtaattgtcacttgttttgatcattttcattaaggtgaatgtttgtttctcat |
25041879 |
T |
|
| Q |
101 |
catttttagttatgtgtatacattgtgcacttatactgttaattttaaatttaattttttaataacgtat |
170 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
25041880 |
catttttagttatgtttatacattgtgcacttatactattaattttcaatttaattttttaataacgtat |
25041949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 25 - 171
Target Start/End: Complemental strand, 41530304 - 41530158
Alignment:
| Q |
25 |
tctaatttgtgcggaaaaaatatgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcatcatttttagttatgtgtatacatt |
124 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||| ||||||||| |||||||| |
|
|
| T |
41530304 |
tctaatttgtgccgaaaaaatatgtaattgtcacttgctttgatcattttcattaatgtgaatgtttgattattatcatttgtagttatgtttatacatt |
41530205 |
T |
|
| Q |
125 |
gtgcacttatactgttaattttaaatttaattttttaataacgtatc |
171 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
41530204 |
gtgcacttatactattaattttaaatttaattttttaataatgtatc |
41530158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 21869297 - 21869453
Alignment:
| Q |
1 |
ctaatgatgtttagctatattctatctaatttgtgcggaaaaaatatgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| || |
|
|
| T |
21869297 |
ctaatgatgtttagctatattctatctaatttgtgcggaaaaaatatgt-------------tttgatcattttcattaatgtaaatgtttgtttattat |
21869383 |
T |
|
| Q |
101 |
catttttagttatgtgtatacattgtgcacttatactgttaattttaaatttaattttttaataacgtat |
170 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
21869384 |
catttttagttatgtttatacattgtgcacttatactattaattttaaatttaattttttaataacgtat |
21869453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 16 - 171
Target Start/End: Original strand, 29360198 - 29360354
Alignment:
| Q |
16 |
tatattctatctaatttgtgcggaaaaaatatgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcatcatttttagttatgt |
115 |
Q |
| |
|
||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |||| |||||||||||| |
|
|
| T |
29360198 |
tatattctatctaatatgtgtggaaaaaatatgtaattgtcactaattttgatcattttcattaatgtcaatgtttgtttattatca-ttttagttatgt |
29360296 |
T |
|
| Q |
116 |
gtatacattgtgcacttata--ctgttaattttaaatttaattttttaataacgtatc |
171 |
Q |
| |
|
||||||||||||| ||||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
29360297 |
ttatacattgtgcatttataatatattaattttaaatttaattttttaataacgtatc |
29360354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 53330387 - 53330248
Alignment:
| Q |
1 |
ctaatgatgtttagctatattctatctaatttgtgcggaaaaaatatgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |
|
|
| T |
53330387 |
ctaatgatgtttagctatattctatctaatttgtgcggaaaaaatatgtaattgtcacttgttttgatcattttca-------------ttgtttattat |
53330301 |
T |
|
| Q |
101 |
catttttagttatgtgtatacattgtgcacttatactgttaattttaaattta |
153 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
53330300 |
catttttagttatgtttatacattgtgcacttatactattaattttaaattta |
53330248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 53334071 - 53333932
Alignment:
| Q |
1 |
ctaatgatgtttagctatattctatctaatttgtgcggaaaaaatatgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |
|
|
| T |
53334071 |
ctaatgatgtttagctatattctatctaatttgtgcggaaaaaatatgtaattgtcacttgttttgatcattttca-------------ttgtttattat |
53333985 |
T |
|
| Q |
101 |
catttttagttatgtgtatacattgtgcacttatactgttaattttaaattta |
153 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
53333984 |
catttttagttatgtttatacattgtgcacttatactattaattttaaattta |
53333932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 53337748 - 53337609
Alignment:
| Q |
1 |
ctaatgatgtttagctatattctatctaatttgtgcggaaaaaatatgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |
|
|
| T |
53337748 |
ctaatgatgtttagctatattctatctaatttgtgcggaaaaaatatgtaattgtcacttgttttgatcattttca-------------ttgtttattat |
53337662 |
T |
|
| Q |
101 |
catttttagttatgtgtatacattgtgcacttatactgttaattttaaattta |
153 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
53337661 |
catttttagttatgtttatacattgtgcacttatactattaattttaaattta |
53337609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 22 - 176
Target Start/End: Complemental strand, 27391224 - 27391078
Alignment:
| Q |
22 |
ctatctaatttgtgcggaaaaaatatgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcatcatttttagttatgtgtatac |
121 |
Q |
| |
|
||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
27391224 |
ctatcaaatttgtctggaaaaaatatgtaattgtcacttg-----atcattttcattaatgtgaatgtttgtttattatcatttttagttatgtttatac |
27391130 |
T |
|
| Q |
122 |
attgtgcacttatactgttaattttaaatttaattttttaataacgtatcgtatc |
176 |
Q |
| |
|
||| ||||||||||| ||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
27391129 |
attctgcacttatac---taattttaaatttaattttttaataacttatcgtatc |
27391078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 91 - 172
Target Start/End: Original strand, 4533985 - 4534066
Alignment:
| Q |
91 |
tgtttatcatcatttttagttatgtgtatacattgtgcacttatactgttaattttaaatttaattttttaataacgtatcg |
172 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
4533985 |
tgtttatcatcatttttagttatgtttatacattgtgcacttatactattaattttaaatttaattttttaataacgtatcg |
4534066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 4533918 - 4533985
Alignment:
| Q |
1 |
ctaatgatgtttagctatattctatctaatttgtgcggaaaaaatatgtaattgtcacttgttttgat |
68 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
4533918 |
ctaatgatgtttaactatattctatctaatttgtgcggaaaaaacatgtaattgtcacttgttttgat |
4533985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 25 - 115
Target Start/End: Complemental strand, 51360728 - 51360638
Alignment:
| Q |
25 |
tctaatttgtgcggaaaaaatatgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcatcatttttagttatgt |
115 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||||| || ||||||||||||| |||||||||||||||| ||||||||| ||||||| |
|
|
| T |
51360728 |
tctaatttgtgtggaacaaatatgtaattgtcacttgactttatcattttcattagcgtgaatgtttgtttattatcattttttgttatgt |
51360638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 22976393 - 22976334
Alignment:
| Q |
1 |
ctaatgatgtttagctatattctatctaatttgtgcggaaaaaatatgtaattgtcactt |
60 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
22976393 |
ctaatgatgtttagccatattctatctaatttgtgcggaaaaaatatgtaatcgtcactt |
22976334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 165 - 228
Target Start/End: Original strand, 4534076 - 4534136
Alignment:
| Q |
165 |
acgtatcgtatcgggaattttgaaaattttcctatatcgccatatcggtatcgtatcggtatcg |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||| |
|
|
| T |
4534076 |
acgtatcgtatcgggaattttgaaaattttcccgtatcg--atatc-gtatcgtatcggtatcg |
4534136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 112 - 172
Target Start/End: Original strand, 30552510 - 30552570
Alignment:
| Q |
112 |
atgtgtatacattgtgcacttatactgttaattttaaatttaattttttaataacgtatcg |
172 |
Q |
| |
|
|||| ||||||||| ||||||||||| ||| |||||| |||||||||||| |||||||||| |
|
|
| T |
30552510 |
atgtttatacattgcgcacttatactattagttttaattttaattttttattaacgtatcg |
30552570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 44 - 150
Target Start/End: Complemental strand, 50522765 - 50522660
Alignment:
| Q |
44 |
atatgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcatcatttttagttatgtgtatacattgtgcacttatactgttaat |
143 |
Q |
| |
|
|||||||| |||||||||||| | ||||||| | |||| |||||| | |||||||||| ||||||| |||| |||| |||||||| ||||| ||||| |
|
|
| T |
50522765 |
atatgtaaatgtcacttgttt-gctcattttgagtaatttgaatggtaatttatcatcaattttagtaatgtttatatattgtgcatttatatatttaat |
50522667 |
T |
|
| Q |
144 |
tttaaat |
150 |
Q |
| |
|
||||||| |
|
|
| T |
50522666 |
tttaaat |
50522660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 77 - 122
Target Start/End: Complemental strand, 22976318 - 22976273
Alignment:
| Q |
77 |
ttaatgtgaatgtttgtttatcatcatttttagttatgtgtataca |
122 |
Q |
| |
|
||||| ||||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
22976318 |
ttaatatgaatgtttgtttattatcatttttagttatgtttataca |
22976273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 79
Target Start/End: Original strand, 30552092 - 30552146
Alignment:
| Q |
25 |
tctaatttgtgcggaaaaaatatgtaattgtcacttgttttgatcattttcatta |
79 |
Q |
| |
|
||||| |||||| | ||||| ||||||||||| ||||||||||||||||| |||| |
|
|
| T |
30552092 |
tctaacttgtgcaggaaaaaaatgtaattgtcgcttgttttgatcatttttatta |
30552146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 222
Target Start/End: Complemental strand, 41530152 - 41530096
Alignment:
| Q |
166 |
cgtatcgtatcgggaattttgaaaattttcctatatcgccatatcggtatcgtatcg |
222 |
Q |
| |
|
||||||||||| ||||||||||||| ||||| |||| || ||| |||||||||||| |
|
|
| T |
41530152 |
cgtatcgtatcaggaattttgaaaaatttccagtatcaccgtattggtatcgtatcg |
41530096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 163; Significance: 4e-87; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 36606584 - 36606810
Alignment:
| Q |
1 |
ctaatgatgtttagctatattctatctaatttgtgcggaaaaaatatgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36606584 |
ctaatgatgtttagctatattctatctaatttgtgcggaaaaaatatgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcat |
36606683 |
T |
|
| Q |
101 |
catttttagttatgtgtatacattgtgcacttatactgttaattttaaatttaattttttaataacgtat------cgtatcg----ggaattttgaaaa |
190 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
36606684 |
catttttagttatgtttatacattgggcacttatactattaattttaaatttaattttttaataacgtatcgaggccgtatcgtatcggaattttgaaaa |
36606783 |
T |
|
| Q |
191 |
ttttcctatatcgccatatcggtatcg |
217 |
Q |
| |
|
|||||| ||||||| ||||||||||| |
|
|
| T |
36606784 |
ttttcccgtatcgccgtatcggtatcg |
36606810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 8871687 - 8871858
Alignment:
| Q |
1 |
ctaatgatgtttagctatattctatctaatttgtgcggaaaaaatatgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8871687 |
ctaatgatgtttagctatattctatctaatttgtgcggaaaaaatatgtatttgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcat |
8871786 |
T |
|
| Q |
101 |
catttttagttatgtgtatacattgtgcacttatactgttaattttaaatttaattttttaataacgtatcg |
172 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
8871787 |
catttttagttatgtttatacattgtgcacttatactattaattttaaatttaattttttaataacgtatcg |
8871858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 13854328 - 13854157
Alignment:
| Q |
1 |
ctaatgatgtttagctatattctatctaatttgtgcggaaaaaatatgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13854328 |
ctaatgatgtttagctatattctatctaatttgtgcggaaaaaatatgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcat |
13854229 |
T |
|
| Q |
101 |
catttttagttatgtgtatacattgtgcacttatactgttaattttaaatttaattttttaataacgtatcg |
172 |
Q |
| |
|
||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
13854228 |
catttttagttatctttatacattgtgcacttatactattaattttaaatttaattttttaataacgtatcg |
13854157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 6666139 - 6666310
Alignment:
| Q |
1 |
ctaatgatgtttagctatattctatctaatttgtgcggaaaaaatatgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
6666139 |
ctaatgatgtttagctatattctatctaatttgtgcagaaaaaatatgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttattat |
6666238 |
T |
|
| Q |
101 |
catttttagttatgtgtatacattgtgcacttatactgttaattttaaatttaattttttaataacgtatcg |
172 |
Q |
| |
|
||||||||||||||| |||||| | |||||||||||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
6666239 |
catttttagttatgtttatacactctgcacttatactattaagtttaaatttaattttttaataacgtatcg |
6666310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 32659363 - 32659557
Alignment:
| Q |
1 |
ctaatgatgtttagctatattctatctaatttgtgcggaaaa-aatatgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatca |
99 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||||| |||| |||||||||||||||||| ||||||| ||||| ||||||||||| ||||||||| | |
|
|
| T |
32659363 |
ctaatgatgttcaactatattctatctaatttgtgcgaaaaaaaatatgtaattgtcacttcttttgattatttttattaatgtgaaagtttgtttaata |
32659462 |
T |
|
| Q |
100 |
tcatttttagttatgtgtatacattgtgcacttatactgttaattttaaatttaattttttaataacgtatcgtatcgggaattttgaaaatttt |
194 |
Q |
| |
|
|||||||||||||||| |||||| | || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
32659463 |
tcatttttagttatgtttatacactacacatttatactgttaattttaaatttaattttttaataatgtatcgtatcgggaattttgaaattttt |
32659557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 166 - 203
Target Start/End: Complemental strand, 13854152 - 13854115
Alignment:
| Q |
166 |
cgtatcgtatcgggaattttgaaaattttcctatatcg |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
13854152 |
cgtatcgtatcgggaattttgaaaattttcccatatcg |
13854115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 104
Target Start/End: Original strand, 40231624 - 40231684
Alignment:
| Q |
44 |
atatgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcatcatt |
104 |
Q |
| |
|
||||||||||||||||||||||| ||||||| | ||||||||| ||| ||||| |||||| |
|
|
| T |
40231624 |
atatgtaattgtcacttgttttgctcattttgagtaatgtgaacgttaatttattatcatt |
40231684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 196
Target Start/End: Original strand, 8871863 - 8871893
Alignment:
| Q |
166 |
cgtatcgtatcgggaattttgaaaattttcc |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
8871863 |
cgtatcgtatcgggaattttgaaaattttcc |
8871893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 99 - 160
Target Start/End: Original strand, 28063857 - 28063917
Alignment:
| Q |
99 |
atcatttttagttatgtgtatacattgtgcacttatactgttaattttaaatttaatttttt |
160 |
Q |
| |
|
||||||||||||||||| |||| |||||||| ||||| |||| ||||||||||||||||| |
|
|
| T |
28063857 |
atcatttttagttatgtttatatattgtgcatttatatacttaa-tttaaatttaatttttt |
28063917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 139 - 172
Target Start/End: Original strand, 29795570 - 29795603
Alignment:
| Q |
139 |
ttaattttaaatttaattttttaataacgtatcg |
172 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |
|
|
| T |
29795570 |
ttaactttaaatttaattttttaataacgtatcg |
29795603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 162; Significance: 2e-86; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 21112539 - 21112770
Alignment:
| Q |
1 |
ctaatgatgtttagctatattctatctaatttgtgcggaaaaaatatgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21112539 |
ctaatgatgtttagctatattctatctaatttgtgcggaaaaaatatgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcat |
21112638 |
T |
|
| Q |
101 |
catttttagttatgtgtatacattgtgcacttatactgttaattttaaatttaattttttaataa-----------cgtatcgtatcgggaattttgaaa |
189 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
21112639 |
catttttagttatgtttatacattgtgtacttatactattaattttaaatttaattttttaataacgtatcgaggccgtatcgtatcggaaattttgaaa |
21112738 |
T |
|
| Q |
190 |
attttcctatatcgccatatcggtatcgtatc |
221 |
Q |
| |
|
||||||| |||||| ||||||||||||||| |
|
|
| T |
21112739 |
attttcccgtatcgctgtatcggtatcgtatc |
21112770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 8862474 - 8862644
Alignment:
| Q |
1 |
ctaatgatgtttagctatattctatctaatttgtgcggaaaaaatatgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8862474 |
ctaatgatgtttagctatattctatctaatttgtgcggaaaaaatatgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcat |
8862573 |
T |
|
| Q |
101 |
catttttagttatgtgtatacattgtgcacttatactgttaattttaaatttaattttttaataacgtatcg |
172 |
Q |
| |
|
||||||||||||| | ||||||||||||||||||||| || ||||||||||||| ||||||||||||||||| |
|
|
| T |
8862574 |
catttttagttatatttatacattgtgcacttatactattcattttaaatttaa-tttttaataacgtatcg |
8862644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 1414030 - 1413864
Alignment:
| Q |
1 |
ctaatgatgtttagctatattctatctaatttgtgcggaaaaaatatgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcat |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||| || |
|
|
| T |
1414030 |
ctaatgatgtttagctatattcta----atttgtgtggaaaaa-tatgtaaatgtcacttgttttgatcattttcattagtgtgaatgtttgtttattat |
1413936 |
T |
|
| Q |
101 |
catttttagttatgtgtatacattgtgcacttatactgttaattttaaa--tttaattttttaataacgtat |
170 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| | ||||||||||| ||||||||||||||||||||| |
|
|
| T |
1413935 |
catttttagttatgtttatacattgtgcacttatattattaattttaaaattttaattttttaataacgtat |
1413864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 25 - 172
Target Start/End: Complemental strand, 9149816 - 9149669
Alignment:
| Q |
25 |
tctaatttgtgcggaaaaaatatgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcatcatttttagttatgtgtatacatt |
124 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| || |||| |||||||||| |
|
|
| T |
9149816 |
tctaatttgtgctgaaaaaatatgtaattgtcacttgttttgatcattttcattaacctgaatgtttgtttattatcattattcattatatgtatacatt |
9149717 |
T |
|
| Q |
125 |
gtgcacttatactgttaattttaaatttaattttttaataacgtatcg |
172 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
9149716 |
gtgcacgtatactgttagttttaaatttaattttttaataatgtatcg |
9149669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 51 - 171
Target Start/End: Original strand, 34752388 - 34752508
Alignment:
| Q |
51 |
attgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcatcatttttagttatgtgtatacattgtgcacttatactgttaattttaaat |
150 |
Q |
| |
|
|||||| ||| ||||||||||||| |||||||| ||||||| ||||| |||||||||||||||| || ||| || |||| |||||| |||||||||||| |
|
|
| T |
34752388 |
attgtctcttcttttgatcatttttattaatgttaatgtttatttattatcatttttagttatgattacacactgggcacatatactattaattttaaat |
34752487 |
T |
|
| Q |
151 |
ttaattttttaataacgtatc |
171 |
Q |
| |
|
|||| ||||||||||||||| |
|
|
| T |
34752488 |
ataatcttttaataacgtatc |
34752508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: scaffold0017
Description:
Target: scaffold0017; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 37685 - 37452
Alignment:
| Q |
1 |
ctaatgatgtttagctatattctatctaatttgtgcggaaaaaa-tatgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatca |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37685 |
ctaatgatgtttagctatattctatctaatttgtgcggaaaaaaatatgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatca |
37586 |
T |
|
| Q |
100 |
tcatttttagttatgtgtatacattgtgcacttatactgttaattttaaatttaattttttaataacgt-----------atcgtatcgggaattttgaa |
188 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
37585 |
tcatttttagttatgtttatacattgtgcacttatactattaattttaaatttaattttttaataacgtatcgaggccgtatcgtatcaggaattttgaa |
37486 |
T |
|
| Q |
189 |
aattttcctatatcgccatatcggtatcgtatcg |
222 |
Q |
| |
|
|||||||| |||| || |||||||||||||||| |
|
|
| T |
37485 |
aattttcccgtatctccgtatcggtatcgtatcg |
37452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 160; Significance: 2e-85; HSPs: 13)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 26279580 - 26279409
Alignment:
| Q |
1 |
ctaatgatgtttagctatattctatctaatttgtgcggaaaaaatatgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
26279580 |
ctaatgatgtttagctatattctatctaatttgtgcggaaaaaatatgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttattat |
26279481 |
T |
|
| Q |
101 |
catttttagttatgtgtatacattgtgcacttatactgttaattttaaatttaattttttaataacgtatcg |
172 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
26279480 |
catttttagttatgtttatacattgtgcacttatactattaattttaaatttaattttttaataacgtatcg |
26279409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 40819565 - 40819395
Alignment:
| Q |
1 |
ctaatgatgtttagctatattctatctaatttgtgcggaaaaaatatgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
40819565 |
ctaatgatgtttagctatattctatctaatttgtgcggaaaaaatatgtaattgtcacttgttttgatcattt-cattaatgtgaatgtttgtttatcat |
40819467 |
T |
|
| Q |
101 |
catttttagttatgtgtatacattgtgcacttatactgttaattttaaatttaattttttaataacgtatcg |
172 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
40819466 |
catttttagttatgtttatacattgtgcacttatactattaattttaaatttaattttttaataacgtatcg |
40819395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 25444050 - 25444282
Alignment:
| Q |
1 |
ctaatgatgtttagctatattctatctaatttgtgcggaaaaaatatgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcat |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25444050 |
ctaatgatgtttaattatattctatctaatttgtgcggaaaaaacatgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcat |
25444149 |
T |
|
| Q |
101 |
catttttagttatgtgtatacattgtgcacttatactgttaattttaaatttaattttttaataa-----------cgtatcgtatcgggaattttgaaa |
189 |
Q |
| |
|
||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
25444150 |
catttttagttatgtttatacattgtccacttatactattaattttaaatttaattttttaataacgtatcgaagccgtatcgtatcgggaattttgaaa |
25444249 |
T |
|
| Q |
190 |
attttcctatatcgccatatcggtatcgtatcg |
222 |
Q |
| |
|
||||||| |||||||| |||| |||| |||||| |
|
|
| T |
25444250 |
attttcccatatcgccgtatcagtattgtatcg |
25444282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 19927889 - 19927719
Alignment:
| Q |
1 |
ctaatgatgtttagctatattctatctaatttgtgcggaaaaaatatgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
19927889 |
ctaatgatgtttagctatattctatctaatttgtgcggaaaaaatatgtaattgtcacttgttttgatcattt-cattaatgtgaatgtttgtttatcat |
19927791 |
T |
|
| Q |
101 |
catttttagttatgtgtatacattgtgcacttatactgttaattttaaatttaattttttaataacgtatcg |
172 |
Q |
| |
|
||||||||||||||| |||||||||| |||||||||| |||||||||||||||||||||||| ||||||||| |
|
|
| T |
19927790 |
catttttagttatgtttatacattgtacacttatactattaattttaaatttaattttttaaaaacgtatcg |
19927719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 30948002 - 30948159
Alignment:
| Q |
1 |
ctaatgatgtttagctatattctatctaatttgtgcggaaaaaatatgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30948002 |
ctaatgatgtttagctatattctatctaatttgtgcggaaaaaacatgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcat |
30948101 |
T |
|
| Q |
101 |
catttttagttatgtgtatacattgtgcacttatactgttaattttaaatttaatttt |
158 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
30948102 |
catttttagttatgtttatacattgtgcacttatactattaattttaaatttaatttt |
30948159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 22204958 - 22204787
Alignment:
| Q |
1 |
ctaatgatgtttagctatattctatctaatttgtgcggaaaaaatatgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcat |
100 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
22204958 |
ctaacgatgtttagttatattctatctaatttgtgctgaaaaaatatgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttattat |
22204859 |
T |
|
| Q |
101 |
catttttagttatgtgtatacattgtgcacttatactgttaattttaaatttaattttttaataacgtatcg |
172 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
22204858 |
catttttagttatgtttatacagtgtgcacttatactattaattttaaatttaattttttaataacgtatcg |
22204787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 22229781 - 22229952
Alignment:
| Q |
1 |
ctaatgatgtttagctatattctatctaatttgtgcggaaaaaatatgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcat |
100 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
22229781 |
ctaacgatgtttagttatattctatctaatttgtgctgaaaaaatatgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttattat |
22229880 |
T |
|
| Q |
101 |
catttttagttatgtgtatacattgtgcacttatactgttaattttaaatttaattttttaataacgtatcg |
172 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
22229881 |
catttttagttatgtttatacagtgtgcacttatactattaattttaaatttaattttttaataacgtatcg |
22229952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 45281256 - 45281422
Alignment:
| Q |
1 |
ctaatgatgtttagctatattctatctaatttgtgcggaaaa-aatatgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatca |
99 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |
|
|
| T |
45281256 |
ctaatgatgtttagctatattctatttaatttgtgctgaaaaaaatatgtaattgtcacttgttttgatcattttcattaatgtgaatgttagtttatta |
45281355 |
T |
|
| Q |
100 |
tcatttttagttatgtgtatacattgtgcacttatactgttaattttaaatttaattttttaataac |
166 |
Q |
| |
|
||||||||| |||||| |||||| | |||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
45281356 |
tcatttttaattatgtttatacactatgcacttatactattaattttaaatttaattttttaataac |
45281422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 49 - 172
Target Start/End: Complemental strand, 15042848 - 15042725
Alignment:
| Q |
49 |
taattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcatcatttttagttatgtgtatacattgtgcacttatactgttaattttaa |
148 |
Q |
| |
|
||||| |||||||||||||||||||||||| | || ||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||| |||||| |
|
|
| T |
15042848 |
taattatcacttgttttgatcattttcatttacgtaaatgtttgtttattatcatttttagttatgtctatacattgtgcacttatactattagttttaa |
15042749 |
T |
|
| Q |
149 |
atttaattttttaataacgtatcg |
172 |
Q |
| |
|
||||||||||| |||||||||||| |
|
|
| T |
15042748 |
atttaatttttgaataacgtatcg |
15042725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 65 - 172
Target Start/End: Original strand, 22293350 - 22293457
Alignment:
| Q |
65 |
tgatcattttcattaatgtgaatgtttgtttatcatcatttttagttatgtgtatacattgtgcacttatactgttaattttaaatttaattttttaata |
164 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
22293350 |
tgatcattttcattaacttgaatgtttatttattatcatttttagttatgtttatacattgtgcacttatactattaattttaaatttaattttttaata |
22293449 |
T |
|
| Q |
165 |
acgtatcg |
172 |
Q |
| |
|
|||||||| |
|
|
| T |
22293450 |
acgtatcg |
22293457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 166 - 228
Target Start/End: Original strand, 30948585 - 30948647
Alignment:
| Q |
166 |
cgtatcgtatcgggaattttgaaaattttcctatatcgccatatcggtatcgtatcggtatcg |
228 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |
|
|
| T |
30948585 |
cgtatcgtatcgggaattttgaaaattttcccgtatcgctgtatcggtatcgtatcggtatcg |
30948647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 44 - 162
Target Start/End: Original strand, 25557980 - 25558097
Alignment:
| Q |
44 |
atatgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcatcatttttagttatgtgtatacattgtgcacttatactgttaat |
143 |
Q |
| |
|
|||||||| |||||||||||| | ||||||| | |||| |||||| | |||||||||| ||||||| |||| |||| ||||| || ||||| ||||| |
|
|
| T |
25557980 |
atatgtaaatgtcacttgttt-gctcattttgagtaatttgaatggtaatttatcatcaattttagtaatgtttatatattgtacatttatatatttaat |
25558078 |
T |
|
| Q |
144 |
tttaaatttaattttttaa |
162 |
Q |
| |
|
|||||||||||| |||||| |
|
|
| T |
25558079 |
tttaaatttaatattttaa |
25558097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 44 - 162
Target Start/End: Original strand, 36281928 - 36282045
Alignment:
| Q |
44 |
atatgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcatcatttttagttatgtgtatacattgtgcacttatactgttaat |
143 |
Q |
| |
|
||||||||||||||||||||| ||||||| | |||| |||||||| |||||||||| ||| || |||| |||| |||||||| |||| ||||| |
|
|
| T |
36281928 |
atatgtaattgtcacttgtttac-tcattttgagtaatttgaatgttaatttatcatcaatttcggtaatgtttatatattgtgcatatatataattaat |
36282026 |
T |
|
| Q |
144 |
tttaaatttaattttttaa |
162 |
Q |
| |
|
|||||||||||| |||||| |
|
|
| T |
36282027 |
tttaaatttaatattttaa |
36282045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 155; Significance: 2e-82; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 14314020 - 14313788
Alignment:
| Q |
1 |
ctaatgatgtttagctatattctatctaatttgtgcggaaaaaatatgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcat |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
14314020 |
ctaatgatatttagctatattctatctaatttgtgcggaaaaaatatgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttattat |
14313921 |
T |
|
| Q |
101 |
catttttagttatgtgtatacattgtgcacttatactgttaattttaaatttaattttttaataacgt-----------atcgtatcgggaattttgaaa |
189 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
14313920 |
catttttagttatgtttatacattgtgcacttatactattaattctaaatttaattttttaataacgtatcgaggccgtatcgtattgggaattttgaaa |
14313821 |
T |
|
| Q |
190 |
attttcctatatcgccatatcggtatcgtatcg |
222 |
Q |
| |
|
||||||| ||||||| |||||||||| ||||| |
|
|
| T |
14313820 |
attttcccgtatcgccgtatcggtatcatatcg |
14313788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 2 - 172
Target Start/End: Original strand, 14811720 - 14811890
Alignment:
| Q |
2 |
taatgatgtttagctatattctatctaatttgtgcggaaaaaatatgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcatc |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14811720 |
taatgatgtttagctatattctatctaatttgtgcggaaaaaacatgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcatc |
14811819 |
T |
|
| Q |
102 |
atttttagttatgtgtatacattgtgcacttatactgttaattttaaatttaattttttaataacgtatcg |
172 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| |||| |||||||||| |||||||||||||||||| |
|
|
| T |
14811820 |
atttttagttatgtttatacattgtgcacttatactattaactttaaatttatttttttaataacgtatcg |
14811890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 13043453 - 13043292
Alignment:
| Q |
1 |
ctaatgatgtttagctatattctatctaatttgtgcggaaaaaatatgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcat |
100 |
Q |
| |
|
|||||||||||||||||||||||| | ||||| |||||||| | |||||||||||||||||||||||||||||||||||| ||||||||| || |
|
|
| T |
13043453 |
ctaatgatgtttagctatattcta----agttgtgttgaaaaaatgt-taattgtcacttgttttgatcattttcattaatgtg----tttgtttattat |
13043363 |
T |
|
| Q |
101 |
catttttagttatgtgtatacattgtgcacttatactgttaattttaaatttaattttttaataacgtatcg |
172 |
Q |
| |
|
|||||||| |||| | ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
13043362 |
catttttaattatatttatacattgtgca-ttatactattaattttaaatttaattttttaataacgtatcg |
13043292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 136; Significance: 5e-71; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 54260558 - 54260709
Alignment:
| Q |
1 |
ctaatgatgtttagctatattctatctaatttgtgcggaaaaaatatgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54260558 |
ctaatgatgtttagctatattctatctaatttgtgcagaaaaaacatgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcat |
54260657 |
T |
|
| Q |
101 |
catttttagttatgtgtatacattgtgcacttatactgttaattttaaattt |
152 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
54260658 |
catttttagttatgtttatacattgtgcacttatactattaattttaaattt |
54260709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 7 - 172
Target Start/End: Original strand, 26261633 - 26261795
Alignment:
| Q |
7 |
atgtttagctatattctatctaatttgtgcggaaaaaatatgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcatcatttt |
106 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
26261633 |
atgtttagctatattcta----atttgtgtggaaaaaatatgtaattgtcacttgttttgatcattttcatttatgtgaatgtttgtttattatcatttt |
26261728 |
T |
|
| Q |
107 |
tagttatgtgtatacattgtgcacttatactgttaatttt-aaatttaattttttaataacgtatcg |
172 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
26261729 |
aagttatgtttatacattgtgcacttatactgttaattttaaaatttaattttttaataacgtatcg |
26261795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 49 - 172
Target Start/End: Original strand, 32761020 - 32761143
Alignment:
| Q |
49 |
taattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcatcatttttagttatgtgtatacattgtgcacttatactgttaattttaa |
148 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||| |||||||||||||||| ||| |||||| |
|
|
| T |
32761020 |
taattgtcgcttgttttgatcattttcattaatgtgaatgtttgtttattatcatttttaattatgttcatatattgtgcacttatactattagttttaa |
32761119 |
T |
|
| Q |
149 |
atttaattttttaataacgtatcg |
172 |
Q |
| |
|
|||||||||||||| ||||||||| |
|
|
| T |
32761120 |
atttaattttttaagaacgtatcg |
32761143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 99 - 195
Target Start/End: Original strand, 51161615 - 51161712
Alignment:
| Q |
99 |
atcatttttagttatgtgtatacattgtgcacttatactgttaattttaaatttaatttt-ttaataacgtatcgtatcgggaattttgaaaattttc |
195 |
Q |
| |
|
||||||||||||||||| |||| |||||||||||||| | ||| |||||||||||||||| |||||||| ||||||| | ||||||||||| |||| |
|
|
| T |
51161615 |
atcatttttagttatgtttatatattgtgcacttatattattagttttaaatttaattttcttaataacatatcgtaatgaaaattttgaaaaatttc |
51161712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 227
Target Start/End: Original strand, 12062381 - 12062441
Alignment:
| Q |
167 |
gtatcgtatcgggaattttgaaaattttcctatatcgccatatcggtatcgtatcggtatc |
227 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||| ||||||||||||||| ||||| |
|
|
| T |
12062381 |
gtatcgtatcgggaattttgaaaaatttcccatatcattgtatcggtatcgtatccgtatc |
12062441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 152
Target Start/End: Original strand, 54433906 - 54434013
Alignment:
| Q |
44 |
atatgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcatcatttttagttatgtgtatacattgtgcacttatactgttaat |
143 |
Q |
| |
|
|||||||| |||||||||||| | ||||||| | |||| |||||| | |||||||||| ||||||| |||| |||| |||||||| ||||| | ||| |
|
|
| T |
54433906 |
atatgtaaatgtcacttgttt-gctcattttgagtaatttgaatggtaatttatcatcaattttagtaatgtttatatattgtgcatttatatattaaat |
54434004 |
T |
|
| Q |
144 |
tttaaattt |
152 |
Q |
| |
|
||||||||| |
|
|
| T |
54434005 |
tttaaattt |
54434013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 166 - 223
Target Start/End: Original strand, 54434036 - 54434093
Alignment:
| Q |
166 |
cgtatcgtatcgggaattttgaaaattttcctatatcgccatatcggtatcgtatcgg |
223 |
Q |
| |
|
||||||||||||| |||||| |||||| || ||||||| ||||||||||||||||| |
|
|
| T |
54434036 |
cgtatcgtatcggaaattttacaaatttatctgtatcgccgtatcggtatcgtatcgg |
54434093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 129; Significance: 7e-67; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 2 - 170
Target Start/End: Original strand, 3365904 - 3366072
Alignment:
| Q |
2 |
taatgatgtttagctatattctatctaatttgtgcggaaaaaatatgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcatc |
101 |
Q |
| |
|
|||||||||||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |
|
|
| T |
3365904 |
taatgatgtttaactatattctatcgaatttgtgcgaaaaaaatatgtaattgtcacttgttttgatcattttcattaatgtgaatgtttatttattatc |
3366003 |
T |
|
| Q |
102 |
atttttagttatgtgtatacattgtgcacttatactgttaattttaaatttaattttttaataacgtat |
170 |
Q |
| |
|
|||||||| ||||| |||||| |||||||||||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
3366004 |
atttttagctatgtttatacactgtgcacttatactattaattttaaatttaactttttaataacgtat |
3366072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 49 - 228
Target Start/End: Complemental strand, 22150270 - 22150080
Alignment:
| Q |
49 |
taattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcatcatttttagttatgtgtatacattgtgcacttatactgttaattttaa |
148 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||| ||||||| ||| |||||| |
|
|
| T |
22150270 |
taattgtcacttgttttggtcattttcattaatgtgaatgtttgtttattatcatttttagttatgtttatatattgtgcatttatactattatttttaa |
22150171 |
T |
|
| Q |
149 |
atttaattttttaataa-----------cgtatcgtatcgggaattttgaaaattttcctatatcgccatatcggtatcgtatcggtatcg |
228 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||| ||||||||| |||| | ||||||| |||||||||||||| |||||| |
|
|
| T |
22150170 |
atttaattttttaataatgtatcgagtccgtatcgtaacgggagttttgaaaaatttcttgtatcgccgcatcggtatcgtatccgtatcg |
22150080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 102 - 218
Target Start/End: Complemental strand, 1608577 - 1608450
Alignment:
| Q |
102 |
atttttagttatgtgtatacattgtgcacttatactgttaattttaaatttaattttttaataacgtatc-----------gtatcgggaattttgaaaa |
190 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
1608577 |
atttttagttatgtttatacattttgcacttatactattaattttaaatttaattttttaataacgtatcgaggccgcattgtatcgggaattttgaaaa |
1608478 |
T |
|
| Q |
191 |
ttttcctatatcgccatatcggtatcgt |
218 |
Q |
| |
|
|||||| ||||||| |||||||||||| |
|
|
| T |
1608477 |
ttttcccgtatcgccgtatcggtatcgt |
1608450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 39 - 144
Target Start/End: Complemental strand, 23205782 - 23205677
Alignment:
| Q |
39 |
aaaaaatatgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcatcatttttagttatgtgtatacattgtgcacttatactg |
138 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |||||| || |||| | |||||||||| |
|
|
| T |
23205782 |
aaaaaatatgaaattgtcacttgttttgatcattttcattaatgtgaatgttagtttattatcatttttaattatgtttacacatcggacacttatacta |
23205683 |
T |
|
| Q |
139 |
ttaatt |
144 |
Q |
| |
|
|||||| |
|
|
| T |
23205682 |
ttaatt |
23205677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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