View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0740_high_11 (Length: 499)
Name: NF0740_high_11
Description: NF0740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0740_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 9 - 444
Target Start/End: Original strand, 7308781 - 7309221
Alignment:
| Q |
9 |
gaataatatgagttgagaattcgaaaagaaaataataatataaaagagcatctaatcgtccaaaggaattcagatttccttattcggaaaaatctcgcaa |
108 |
Q |
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| T |
7308781 |
gaataatacgaattgagaattcgaaaagaaaataataatataaaagagcatctaatagtccaaaggaattcagatttccttattcggaaaaatctcgcaa |
7308880 |
T |
|
| Q |
109 |
taaccatgtcattaactatcggatcaagattgaacg-tgtagatttcaacgtcgagtcgagatgttggtgtttaaggaaatcaaataaaaactttgtttg |
207 |
Q |
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| T |
7308881 |
tcaccatgtcattaactatcggatcaagattgaacggtgtagatttcaacgtcgagtcgagatgtcagtgtttaaggaaatcaaataaaaactttgcttg |
7308980 |
T |
|
| Q |
208 |
aaatcttcattcttagatcttaatccaacagtcaccaacatatgagtccgtgaatgctggattttagcaacagaaaggaatccaaattctcctcc---ta |
304 |
Q |
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| T |
7308981 |
aaatcttcattcttagatcttaatccaacagtcaccaacatatgagttcgtgaatgctggattttagcaacagaaagaaatccaaattctcctccttata |
7309080 |
T |
|
| Q |
305 |
acctagcagccttatgcttaatattaat-aaaatttaacacaaaaataatggaattaaagttgaagcaaaataacatatactcaccagtgacaccagaaa |
403 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7309081 |
acctagcagccttatgcttaatattaataaaaatttaacacacagataatggaattaaagttgaagcaaaataacatatactcaccagtgacaccagaaa |
7309180 |
T |
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| Q |
404 |
caacatcagtagcagaaataggataaaaaggaagttcagtt |
444 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
7309181 |
caacatcagtagcagaaataggataaaaaggaagttcagtt |
7309221 |
T |
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