View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0740_high_110 (Length: 251)

Name: NF0740_high_110
Description: NF0740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0740_high_110
NF0740_high_110
[»] chr1 (20 HSPs)
chr1 (20-251)||(41061449-41061680)
chr1 (50-251)||(26720333-26720534)
chr1 (13-205)||(41181807-41181999)
chr1 (24-213)||(49968935-49969124)
chr1 (25-213)||(17707605-17707793)
chr1 (24-210)||(10711459-10711645)
chr1 (24-213)||(47107023-47107212)
chr1 (24-211)||(9903610-9903797)
chr1 (24-213)||(25591817-25592006)
chr1 (28-205)||(30111275-30111452)
chr1 (28-148)||(47586934-47587054)
chr1 (27-208)||(12173819-12174000)
chr1 (24-208)||(21335570-21335754)
chr1 (44-117)||(21344197-21344270)
chr1 (44-117)||(21349062-21349135)
chr1 (24-208)||(28098309-28098496)
chr1 (24-95)||(10722645-10722716)
chr1 (26-95)||(40292546-40292615)
chr1 (64-204)||(7397064-7397204)
chr1 (20-210)||(43810414-43810604)
[»] scaffold0179 (1 HSPs)
scaffold0179 (20-251)||(7132-7363)
[»] chr5 (10 HSPs)
chr5 (20-251)||(20209024-20209255)
chr5 (20-251)||(4922838-4923069)
chr5 (24-251)||(4416005-4416232)
chr5 (24-251)||(40089947-40090174)
chr5 (24-213)||(6048832-6049020)
chr5 (24-205)||(34874790-34874971)
chr5 (26-205)||(7001116-7001295)
chr5 (24-208)||(20591744-20591929)
chr5 (60-196)||(29094866-29095002)
chr5 (150-198)||(18359448-18359496)
[»] chr3 (21 HSPs)
chr3 (20-251)||(26845475-26845706)
chr3 (24-205)||(47536876-47537057)
chr3 (24-208)||(24124189-24124373)
chr3 (24-205)||(11639574-11639755)
chr3 (24-233)||(50543829-50544038)
chr3 (26-205)||(19221737-19221914)
chr3 (24-205)||(32093268-32093446)
chr3 (24-251)||(33121622-33121849)
chr3 (24-251)||(8695196-8695423)
chr3 (24-251)||(9047083-9047310)
chr3 (24-142)||(25341748-25341866)
chr3 (24-210)||(36635046-36635232)
chr3 (33-208)||(23818194-23818369)
chr3 (36-208)||(43122014-43122186)
chr3 (33-208)||(46909015-46909190)
chr3 (64-208)||(49500679-49500823)
chr3 (33-196)||(46665097-46665259)
chr3 (49-208)||(38898602-38898761)
chr3 (60-202)||(45683820-45683962)
chr3 (134-178)||(2427658-2427702)
chr3 (147-184)||(13797844-13797881)
[»] chr8 (9 HSPs)
chr8 (20-251)||(26031096-26031327)
chr8 (20-213)||(45256171-45256364)
chr8 (24-187)||(23679771-23679934)
chr8 (24-205)||(17658438-17658620)
chr8 (24-208)||(11155126-11155310)
chr8 (24-208)||(36156765-36156949)
chr8 (25-70)||(29470684-29470729)
chr8 (151-181)||(38046093-38046123)
chr8 (66-114)||(12133978-12134026)
[»] chr4 (20 HSPs)
chr4 (24-251)||(53779653-53779880)
chr4 (15-247)||(10563618-10563850)
chr4 (24-250)||(18935276-18935502)
chr4 (24-251)||(29213286-29213512)
chr4 (24-251)||(34322624-34322851)
chr4 (24-204)||(12881037-12881217)
chr4 (24-202)||(53487307-53487485)
chr4 (24-205)||(20395204-20395385)
chr4 (24-251)||(18106861-18107088)
chr4 (24-251)||(30274117-30274344)
chr4 (24-251)||(42777846-42778073)
chr4 (24-251)||(449659-449886)
chr4 (24-205)||(31863874-31864055)
chr4 (40-251)||(42823068-42823278)
chr4 (24-82)||(1844731-1844789)
chr4 (24-92)||(55854402-55854470)
chr4 (21-205)||(29554091-29554275)
chr4 (25-95)||(52741299-52741369)
chr4 (60-202)||(46639344-46639486)
chr4 (150-198)||(2822395-2822443)
[»] chr6 (12 HSPs)
chr6 (24-251)||(17874106-17874333)
chr6 (24-203)||(17079544-17079723)
chr6 (24-205)||(11061207-11061388)
chr6 (24-251)||(9199557-9199784)
chr6 (31-142)||(26526146-26526257)
chr6 (25-106)||(33722662-33722743)
chr6 (105-196)||(23066410-23066501)
chr6 (87-208)||(15311274-15311395)
chr6 (87-208)||(15316568-15316689)
chr6 (147-196)||(2365511-2365560)
chr6 (120-196)||(19256749-19256825)
chr6 (96-196)||(31297504-31297604)
[»] chr2 (7 HSPs)
chr2 (20-168)||(30273604-30273752)
chr2 (24-251)||(3000053-3000280)
chr2 (28-251)||(7075724-7075947)
chr2 (24-251)||(1379690-1379917)
chr2 (25-205)||(11026709-11026889)
chr2 (20-68)||(24313911-24313959)
chr2 (96-196)||(35487525-35487625)
[»] chr7 (13 HSPs)
chr7 (24-233)||(28060186-28060395)
chr7 (28-247)||(7458980-7459199)
chr7 (24-251)||(34231307-34231534)
chr7 (24-208)||(4076883-4077067)
chr7 (24-251)||(29113854-29114081)
chr7 (33-145)||(10282231-10282343)
chr7 (21-205)||(27941845-27942029)
chr7 (20-67)||(46177859-46177906)
chr7 (96-196)||(34344482-34344582)
chr7 (56-202)||(8771074-8771220)
chr7 (105-196)||(6909740-6909831)
chr7 (24-69)||(18654319-18654364)
chr7 (28-142)||(39060156-39060270)
[»] scaffold0308 (1 HSPs)
scaffold0308 (24-204)||(11686-11866)
[»] scaffold0007 (1 HSPs)
scaffold0007 (24-205)||(181737-181918)
[»] scaffold0014 (1 HSPs)
scaffold0014 (137-202)||(72057-72122)


Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 20 - 251
Target Start/End: Complemental strand, 41061680 - 41061449
Alignment:
Q  20 gaaaggacttgagcaccacctatctgtaccaaacctaaaaacaacctttttggctttcaaccatgccaaagacataaatttaactttatctaacaaccta 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||     
T  41061680 gaaaggacttgagcaccacctatctgtaccaaacctaaaaacaacatttttggctttcaaccatgcaaaagacataaatttaactttatctaacaacctg 41061581  T
Q  120 ggaatagaagtaacaacattattgaagagtctgttattacgttcattccataaaatccaaacacacaaaagccaaatcagctgaaggaaatctcgaaccg 219  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  41061580 agaatagaagtaacaacattattgaagagtctgttattacgttcattccataaaacccaaacacacaaaagtcaaatcagctgaaggaaatctcgaaccg 41061481  T
Q  220 ctttcccaccacctaacaaatgcacaaactga 251  Q
    |||| ||||||||| |||| ||||||||||||    
T  41061480 ctttaccaccacctgacaagtgcacaaactga 41061449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 50 - 251
Target Start/End: Original strand, 26720333 - 26720534
Alignment:
Q  50 aaacctaaaaacaacctttttggctttcaaccatgccaaagacataaatttaactttatctaacaacctaggaatagaagtaacaacattattgaagagt 149  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  26720333 aaacctaaaaacaacctttttggctttcaaccatgctaaagacataaatttaactttatctaacaacctgggaatagaagtaacaacattattgaagagt 26720432  T
Q  150 ctgttattacgttcattccataaaatccaaacacacaaaagccaaatcagctgaaggaaatctcgaaccgctttcccaccacctaacaaatgcacaaact 249  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||    
T  26720433 ctgttattacgttcattccataaaacccaaacacacaaaagccaaatcagctgaaggaaatctcgaaccgctttaccaccacctgacaagtgcacaaact 26720532  T
Q  250 ga 251  Q
    ||    
T  26720533 ga 26720534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 13 - 205
Target Start/End: Original strand, 41181807 - 41181999
Alignment:
Q  13 aatattagaaaggacttgagcaccacctatctgtaccaaacctaaaaacaacctttttggctttcaaccatgccaaagacataaatttaactttatctaa 112  Q
    |||||| ||| || ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| || ||||||||| ||||||||||||||||    
T  41181807 aatattggaaggggcttgagcaccatctatctgaaccaaacctaaaaacaacctttttggctttcaaccaggctaaagacatatatttaactttatctaa 41181906  T
Q  113 caacctaggaatagaagtaacaacattattgaagagtctgttattacgttcattccataaaatccaaacacacaaaagccaaatcagctgaag 205  Q
    |||||| ||||||||||| |||||||||||||| ||||||||||||||||| |||||||||| |||||| ||||| |||||||| ||||||||    
T  41181907 caacctgggaatagaagttacaacattattgaaaagtctgttattacgttcgttccataaaacccaaacgcacaagagccaaataagctgaag 41181999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 24 - 213
Target Start/End: Original strand, 49968935 - 49969124
Alignment:
Q  24 ggacttgagcaccacctatctgtaccaaacctaaaaacaacctttttggctttcaaccatgccaaagacataaatttaactttatctaacaacctaggaa 123  Q
    |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| || ||||||||| |||||||||||||||||||  | ||||    
T  49968935 ggacttgagcaccacctatctgaaccaaacctaaaaacaacatttttggctttcaaccaggctaaagacatatatttaactttatctaacaagttgggaa 49969034  T
Q  124 tagaagtaacaacattattgaagagtctgttattacgttcattccataaaatccaaacacacaaaagccaaatcagctgaaggaaatctc 213  Q
    ||||||| ||||||||||| || ||||||||||||||||| ||||||||||  ||||||||||| |||||||| |||||||| |||||||    
T  49969035 tagaagttacaacattattaaaaagtctgttattacgttcgttccataaaactcaaacacacaagagccaaataagctgaagaaaatctc 49969124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 25 - 213
Target Start/End: Original strand, 17707605 - 17707793
Alignment:
Q  25 gacttgagcaccacctatctgtaccaaacctaaaaacaacctttttggctttcaaccatgccaaagacataaatttaactttatctaacaacctaggaat 124  Q
    ||||||| || ||| |||||| ||||||||||||||||||||| |||||||||||||| || ||||||||| |||||||||||||||||||||||| |||    
T  17707605 gacttgaacaacacatatctgaaccaaacctaaaaacaaccttattggctttcaaccaggctaaagacatatatttaactttatctaacaacctagaaat 17707704  T
Q  125 agaagtaacaacattattgaagagtctgttattacgttcattccataaaatccaaacacacaaaagccaaatcagctgaaggaaatctc 213  Q
    |||||| |||||||||||||| ||||||||||||||||| |||||||||| |||||| ||||| |||||||| |||||||| |||||||    
T  17707705 agaagttacaacattattgaaaagtctgttattacgttcgttccataaaacccaaacgcacaagagccaaataagctgaagaaaatctc 17707793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 24 - 210
Target Start/End: Complemental strand, 10711645 - 10711459
Alignment:
Q  24 ggacttgagcaccacctatctgtaccaaacctaaaaacaacctttttggctttcaaccatgccaaagacataaatttaactttatctaacaacctaggaa 123  Q
    |||||||| ||||||||||||| ||||||||||||||| |||||||||||||||||||| || ||||||||| ||||||| |||||||||||||||| ||    
T  10711645 ggacttgaacaccacctatctgaaccaaacctaaaaaccacctttttggctttcaaccaggctaaagacatatatttaaccttatctaacaacctagaaa 10711546  T
Q  124 tagaagtaacaacattattgaagagtctgttattacgttcattccataaaatccaaacacacaaaagccaaatcagctgaaggaaat 210  Q
    ||||||| |||||||||||||| |  ||||||||| |||| |||||||||  |||||| ||||| |||||||| | |||||| ||||    
T  10711545 tagaagttacaacattattgaaaaacctgttattatgttcgttccataaatcccaaacgcacaagagccaaataaactgaagaaaat 10711459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 24 - 213
Target Start/End: Complemental strand, 47107212 - 47107023
Alignment:
Q  24 ggacttgagcaccacctatctgtaccaaacctaaaaacaacctttttggctttcaaccatgccaaagacataaatttaactttatctaacaacctaggaa 123  Q
    |||| |||||||||| ||||||||||||| ||||||||||||||||||||||||| ||| || ||||||||| |||||| |||||| |||||||| ||||    
T  47107212 ggacgtgagcaccacatatctgtaccaaatctaaaaacaacctttttggctttcagccaggctaaagacatatatttaattttatcaaacaacctgggaa 47107113  T
Q  124 tagaagtaacaacattattgaagagtctgttattacgttcattccataaaatccaaacacacaaaagccaaatcagctgaaggaaatctc 213  Q
    ||||||  || ||||||||||| || |||| ||| ||||| |||||||||| |||||||||||| |||||||| |||||||| |||||||    
T  47107112 tagaagataccacattattgaacagcctgtcattgcgttcgttccataaaacccaaacacacaagagccaaataagctgaagaaaatctc 47107023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 24 - 211
Target Start/End: Complemental strand, 9903797 - 9903610
Alignment:
Q  24 ggacttgagcaccacctatctgtaccaaacctaaaaacaacctttttggctttcaaccatgccaaagacataaatttaactttatctaacaacctaggaa 123  Q
    ||||||||||||||| |||||| |||||||||||||||||| |||||| |||||||||| || ||||||||| |||||||||||||||||||| | ||||    
T  9903797 ggacttgagcaccacttatctgaaccaaacctaaaaacaacatttttgactttcaaccaggctaaagacatatatttaactttatctaacaacttgggaa 9903698  T
Q  124 tagaagtaacaacattattgaagagtctgttattacgttcattccataaaatccaaacacacaaaagccaaatcagctgaaggaaatc 211  Q
    ||||||| |||||||||||||| |  || ||||||||||| ||| ||||||  | ||| ||||| |||||||| |||||||| |||||    
T  9903697 tagaagttacaacattattgaaaatcctattattacgttcgttctataaaactctaacgcacaagagccaaatgagctgaagaaaatc 9903610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 24 - 213
Target Start/End: Complemental strand, 25592006 - 25591817
Alignment:
Q  24 ggacttgagcaccacctatctgtaccaaacctaaaaacaacctttttggctttcaaccatgccaaagacataaatttaactttatctaacaacctaggaa 123  Q
    |||||||| ||||||||||||| |||||||||||| || |||||||||||||||||||| || ||||| ||| ||||||||||||||| ||||||  |||    
T  25592006 ggacttgaacaccacctatctgaaccaaacctaaagaccacctttttggctttcaaccaggctaaagatatatatttaactttatctagcaacctgagaa 25591907  T
Q  124 tagaagtaacaacattattgaagagtctgttattacgttcattccataaaatccaaacacacaaaagccaaatcagctgaaggaaatctc 213  Q
    ||||||| |||||||||||||| |  |||||||||||||| ||||||||||  ||||| || |  |||||||| |||||||| |||||||    
T  25591906 tagaagttacaacattattgaaaaccctgttattacgttcgttccataaaactcaaacgcatacgagccaaataagctgaagaaaatctc 25591817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 28 - 205
Target Start/End: Complemental strand, 30111452 - 30111275
Alignment:
Q  28 ttgagcaccacctatctgtaccaaacctaaaaacaacctttttggctttcaaccatgccaaagacataaatttaactttatctaacaacctaggaataga 127  Q
    |||| |||||| |||||  |||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||| || |||||    
T  30111452 ttgaacaccacatatctaaaccaaacctaaaaacaacctttttggctttcaaccaggctaaagacatatatttaactttatctaacaacctggggataga 30111353  T
Q  128 agtaacaacattattgaagagtctgttattacgttcattccataaaatccaaacacacaaaagccaaatcagctgaag 205  Q
    ||| ||||| ||||| || |  ||||||||| |||| |||||||| | |||||| ||||| |||||||| ||||||||    
T  30111352 agttacaactttattaaaaatcctgttattatgttcgttccataagacccaaacgcacaagagccaaataagctgaag 30111275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 28 - 148
Target Start/End: Original strand, 47586934 - 47587054
Alignment:
Q  28 ttgagcaccacctatctgtaccaaacctaaaaacaacctttttggctttcaaccatgccaaagacataaatttaactttatctaacaacctaggaataga 127  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||||||||||| || ||||||||| ||||||| |||||||||||| | | ||||||    
T  47586934 ttgaacaccacctatctgtaccaaacctaaaaacaatctttttggctttcaaccaggctaaagacatatatttaacgttatctaacaacatggaaataga 47587033  T
Q  128 agtaacaacattattgaagag 148  Q
    ||| ||||||||||| |||||    
T  47587034 agttacaacattattaaagag 47587054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 27 - 208
Target Start/End: Original strand, 12173819 - 12174000
Alignment:
Q  27 cttgagcaccacctatctgtaccaaacctaaaaacaacctttttggctttcaaccatgccaaagacataaatttaactttatctaacaacctaggaatag 126  Q
    ||||| || ||||||||||| |||||||||||  ||||||| |||||||||| | | || ||||||||| |||| ||||||||||||||||| |||||||    
T  12173819 cttgaacatcacctatctgtgccaaacctaaaggcaaccttcttggctttcatctaggctaaagacatatatttcactttatctaacaacctgggaatag 12173918  T
Q  127 aagtaacaacattattgaagagtctgttattacgttcattccataaaatccaaacacacaaaagccaaatcagctgaaggaa 208  Q
       | |||||||||||||| |  || ||||| || ||||||||||| |||||||| ||||| |||||||| || ||||||||    
T  12173919 ggcttacaacattattgaaaaacctattattgcgctcattccataagatccaaacgcacaatagccaaataagttgaaggaa 12174000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 24 - 208
Target Start/End: Complemental strand, 21335754 - 21335570
Alignment:
Q  24 ggacttgagcaccacctatctgtaccaaacctaaaaacaacctttttggctttcaaccatgccaaagacataaatttaactttatctaacaacctaggaa 123  Q
    |||||||| |||||| ||| ||| |||||| ||||  || |||||||| |||||||||| || ||||||||| |||| | |||||||| |||||| ||||    
T  21335754 ggacttgaacaccacatatatgtgccaaacataaaggcatcctttttgcctttcaaccaggctaaagacatatatttcagtttatctagcaacctgggaa 21335655  T
Q  124 tagaagtaacaacattattgaagagtctgttattacgttcattccataaaatccaaacacacaaaagccaaatcagctgaaggaa 208  Q
    ||  ||| || ||||||||||| || || || || || ||||||||||| |  ||||||||||| |||||||| |||||||||||    
T  21335654 taagagttaccacattattgaaaagcctattcttgcgctcattccataagactcaaacacacaatagccaaataagctgaaggaa 21335570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 44 - 117
Target Start/End: Complemental strand, 21344270 - 21344197
Alignment:
Q  44 tgtaccaaacctaaaaacaacctttttggctttcaaccatgccaaagacataaatttaactttatctaacaacc 117  Q
    ||||||||||||||||||||| ||||||||||||||||| || ||||||||| |||||| ||| ||||||||||    
T  21344270 tgtaccaaacctaaaaacaacttttttggctttcaaccaggctaaagacatagatttaattttctctaacaacc 21344197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 44 - 117
Target Start/End: Complemental strand, 21349135 - 21349062
Alignment:
Q  44 tgtaccaaacctaaaaacaacctttttggctttcaaccatgccaaagacataaatttaactttatctaacaacc 117  Q
    ||||||||||||||||||||| ||||||||||||||||| || ||||||||| |||||| ||| ||||||||||    
T  21349135 tgtaccaaacctaaaaacaacttttttggctttcaaccaggctaaagacatagatttaattttctctaacaacc 21349062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 24 - 208
Target Start/End: Complemental strand, 28098496 - 28098309
Alignment:
Q  24 ggacttgagcaccacctatctgtaccaaacctaaaaacaacctttttggctttcaaccatgccaaagacataaatttaactttatctaacaacctaggaa 123  Q
    |||| ||| |||||| ||||| | |||||| ||||  |||| ||||||| ||||| ||| || ||||||| | |||| |||||||||| ||||||||| |    
T  28098496 ggacatgaacaccacatatctatgccaaacttaaaggcaacttttttggatttcatccaggctaaagacaaatatttcactttatctagcaacctaggca 28098397  T
Q  124 tagaagta---acaacattattgaagagtctgttattacgttcattccataaaatccaaacacacaaaagccaaatcagctgaaggaa 208  Q
    ||| || |   |||||||||||| | || || ||||| || ||||||||||| ||||| || ||||| |||||||| |||||||||||    
T  28098396 taggaggagttacaacattattggaaagcctattattgcgctcattccataagatccacacgcacaatagccaaataagctgaaggaa 28098309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 24 - 95
Target Start/End: Original strand, 10722645 - 10722716
Alignment:
Q  24 ggacttgagcaccacctatctgtaccaaacctaaaaacaacctttttggctttcaaccatgccaaagacata 95  Q
    |||||||| ||||||||||||| ||||||| ||||||| |||||||| ||||||||||| || |||||||||    
T  10722645 ggacttgaacaccacctatctgaaccaaacttaaaaaccacctttttagctttcaaccaggcaaaagacata 10722716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 26 - 95
Target Start/End: Complemental strand, 40292615 - 40292546
Alignment:
Q  26 acttgagcaccacctatctgtaccaaacctaaaaacaacctttttggctttcaaccatgccaaagacata 95  Q
    ||||||||||||| | || | ||||||||||||||||||||| |||||||||||||| || |||||||||    
T  40292615 acttgagcaccacatctcagaaccaaacctaaaaacaaccttattggctttcaaccaggctaaagacata 40292546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 64 - 204
Target Start/End: Complemental strand, 7397204 - 7397064
Alignment:
Q  64 cctttttggctttcaaccatgccaaagacataaatttaactttatctaacaacctaggaatagaagtaacaacattattgaagagtctgttattacgttc 163  Q
    ||||||||| |||||||||||  |  |||| | | || |||||||| |||||||| ||||||| ||| ||||||||||| || |  || |||||||  ||    
T  7397204 cctttttggatttcaaccatgttagggacacataattcactttatccaacaacctgggaataggagttacaacattattaaacaccctattattacactc 7397105  T
Q  164 attccataaaatccaaacacacaaaagccaaatcagctgaa 204  Q
    ||||||||| | ||||||||| |  |||||||| |||||||    
T  7397104 attccataagacccaaacacaaaggagccaaatgagctgaa 7397064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 20 - 210
Target Start/End: Original strand, 43810414 - 43810604
Alignment:
Q  20 gaaaggacttgagcaccacctatctgtaccaaacctaaaaacaacctttttggctttcaaccatgccaaagacataaatttaactttatctaacaaccta 119  Q
    |||||| ||||| ||||||||||| ||||||| |  |||   ||| ||| | |||||||||||  | |||||||   |||| |||||||| |||||||||    
T  43810414 gaaagggcttgaccaccacctatcagtaccaagcgaaaatgtaacttttctagctttcaaccaacctaaagacaagtattttactttatccaacaaccta 43810513  T
Q  120 ggaatagaagtaacaacattattgaagagtctgttattacgttcattccataaaatccaaacacacaaaagccaaatcagctgaaggaaat 210  Q
    || |||| ||||| |  ||||||||| |  || |||||||||||| ||||||| | |||  |||| | ||||||||| ||| |||| ||||    
T  43810514 ggcataggagtaatagaattattgaacaacctattattacgttcagtccataacacccaggcacaaagaagccaaatgagccgaagaaaat 43810604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0179 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 20 - 251
Target Start/End: Original strand, 7132 - 7363
Alignment:
Q  20 gaaaggacttgagcaccacctatctgtaccaaacctaaaaacaacctttttggctttcaaccatgccaaagacataaatttaactttatctaacaaccta 119  Q
    ||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||     
T  7132 gaaaggacttgagtaccacctatctatacaaaacctaaaaacaacctttttggctttcaaccatgctaaagacataaatttaactttatctaacaacctg 7231  T
Q  120 ggaatagaagtaacaacattattgaagagtctgttattacgttcattccataaaatccaaacacacaaaagccaaatcagctgaaggaaatctcgaaccg 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||    
T  7232 ggaatagaagtaacaacattattgaagagtctgttattacgttcattccataaaacccaaacacacaaaagccaaatcagctgaaggaaatctcgaatcg 7331  T
Q  220 ctttcccaccacctaacaaatgcacaaactga 251  Q
    |||| ||||||||| |||| ||||||||||||    
T  7332 ctttaccaccacctgacaagtgcacaaactga 7363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 20 - 251
Target Start/End: Complemental strand, 20209255 - 20209024
Alignment:
Q  20 gaaaggacttgagcaccacctatctgtaccaaacctaaaaacaacctttttggctttcaaccatgccaaagacataaatttaactttatctaacaaccta 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||     
T  20209255 gaaaggacttgagcaccacctatctgtaccaaacctaaaaacaacctttttggctttcaaccatgctaaagacataaatttaactttatctaacaacctg 20209156  T
Q  120 ggaatagaagtaacaacattattgaagagtctgttattacgttcattccataaaatccaaacacacaaaagccaaatcagctgaaggaaatctcgaaccg 219  Q
     |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||  |||||||||||||    
T  20209155 agaatagaagtaacaacattattgaagagtctgttattaggttcattccataaaacccaaacacacaaaagccaaatcagctgaacaaaatctcgaaccg 20209056  T
Q  220 ctttcccaccacctaacaaatgcacaaactga 251  Q
    |||| ||||||||| |||| ||||||||||||    
T  20209055 ctttaccaccacctgacaagtgcacaaactga 20209024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 20 - 251
Target Start/End: Original strand, 4922838 - 4923069
Alignment:
Q  20 gaaaggacttgagcaccacctatctgtaccaaacctaaaaacaacctttttggctttcaaccatgccaaagacataaatttaactttatctaacaaccta 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||||||||     
T  4922838 gaaaggacttgagcaccacctatctgtaccaaacctaaaaacaacccttttggctttcaaccatgctaaggacataaatttaactttatctaacaacctg 4922937  T
Q  120 ggaatagaagtaacaacattattgaagagtctgttattacgttcattccataaaatccaaacacacaaaagccaaatcagctgaaggaaatctcgaaccg 219  Q
    ||||||||||| ||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||    
T  4922938 ggaatagaagttacaacattattgaagagcctgttattacgttcgttccataaaacccaaacacacaaaagccaaatcagctgaaggaagtctcgaaccg 4923037  T
Q  220 ctttcccaccacctaacaaatgcacaaactga 251  Q
    |||| ||||||||| |||| |  |||||||||    
T  4923038 ctttaccaccacctgacaagttgacaaactga 4923069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 24 - 251
Target Start/End: Complemental strand, 4416232 - 4416005
Alignment:
Q  24 ggacttgagcaccacctatctgtaccaaacctaaaaacaacctttttggctttcaaccatgccaaagacataaatttaactttatctaacaacctaggaa 123  Q
    |||||||| |||||| |||||| ||||||||||||||||||||| |||||||||||||| || ||||||||| |||||||||||||||||||||| ||||    
T  4416232 ggacttgaacaccacatatctgaaccaaacctaaaaacaaccttattggctttcaaccaggctaaagacatatatttaactttatctaacaacctgggaa 4416133  T
Q  124 tagaagtaacaacattattgaagagtctgttattacgttcattccataaaatccaaacacacaaaagccaaatcagctgaaggaaatctcgaaccgcttt 223  Q
    ||||||| |||||||||||||| || |||||||||||| | |||||||||| |||||| ||||| |||||||| || ||||| ||||||| ||  |||||    
T  4416132 tagaagttacaacattattgaaaagcctgttattacgtacgttccataaaacccaaacgcacaagagccaaataagttgaagaaaatctctaatagcttt 4416033  T
Q  224 cccaccacctaacaaatgcacaaactga 251  Q
     || ||||||  ||| | ||||||||||    
T  4416032 acctccacctgtcaagttcacaaactga 4416005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 24 - 251
Target Start/End: Original strand, 40089947 - 40090174
Alignment:
Q  24 ggacttgagcaccacctatctgtaccaaacctaaaaacaacctttttggctttcaaccatgccaaagacataaatttaactttatctaacaacctaggaa 123  Q
    |||||||| |||||||||||| |||||||||||||| |||||||||||||||||||||| || ||||||||| |||| ||||||||||||||||| ||||    
T  40089947 ggacttgaacaccacctatctataccaaacctaaaaccaacctttttggctttcaaccaagctaaagacatatatttgactttatctaacaacctgggaa 40090046  T
Q  124 tagaagtaacaacattattgaagagtctgttattacgttcattccataaaatccaaacacacaaaagccaaatcagctgaaggaaatctcgaaccgcttt 223  Q
    ||||||| |||||||||||||| || ||||||||||| || ||||||| || ||||   |||||||||||||| |||||||||||  ||||||  |||||    
T  40090047 tagaagttacaacattattgaaaagcctgttattacgctcgttccatagaacccaacagcacaaaagccaaataagctgaaggaaggctcgaattgcttt 40090146  T
Q  224 cccaccacctaacaaatgcacaaactga 251  Q
     |||||||||  ||| | ||||||||||    
T  40090147 gccaccacctgtcaagttcacaaactga 40090174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 24 - 213
Target Start/End: Original strand, 6048832 - 6049020
Alignment:
Q  24 ggacttgagcaccacctatctgtaccaaacctaaaaacaacctttttggctttcaaccatgccaaagacataaatttaactttatctaacaacctaggaa 123  Q
    |||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||| || ||||||||| |||||| ||||||||||||||| ||||    
T  6048832 ggacttgaacaccacatatctataccaaacctaaaaacaacctttttggctttcaaccaggctaaagacatatatttaattttatctaacaacct-ggaa 6048930  T
Q  124 tagaagtaacaacattattgaagagtctgttattacgttcattccataaaatccaaacacacaaaagccaaatcagctgaaggaaatctc 213  Q
    ||||||| || ||||||||||| |  || | ||| |||||||||||||||| |||||||||||| |||||||| |||||||| |||||||    
T  6048931 tagaagttaccacattattgaacatcctatcattgcgttcattccataaaacccaaacacacaagagccaaataagctgaagaaaatctc 6049020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 24 - 205
Target Start/End: Complemental strand, 34874971 - 34874790
Alignment:
Q  24 ggacttgagcaccacctatctgtaccaaacctaaaaacaacctttttggctttcaaccatgccaaagacataaatttaactttatctaacaacctaggaa 123  Q
    |||||||||||||||||||||  |||||||||||||||||| |||||| |||||||||| || ||||||||| |||||||||||||||||||| |  |||    
T  34874971 ggacttgagcaccacctatctaaaccaaacctaaaaacaacttttttgactttcaaccaggctaaagacatatatttaactttatctaacaacttgagaa 34874872  T
Q  124 tagaagtaacaacattattgaagagtctgttattacgttcattccataaaatccaaacacacaaaagccaaatcagctgaag 205  Q
    ||||||| ||||||||||||||  |  |||||||||||||||||||||||| |||||| ||||| |||||||| ||||||||    
T  34874871 tagaagttacaacattattgaaaggcttgttattacgttcattccataaaacccaaacgcacaagagccaaataagctgaag 34874790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 26 - 205
Target Start/End: Complemental strand, 7001295 - 7001116
Alignment:
Q  26 acttgagcaccacctatctgtaccaaacctaaaaacaacctttttggctttcaaccatgccaaagacataaatttaactttatctaacaacctaggaata 125  Q
    ||||||| |||||||||||| ||||||||||||||||||||||||| ||||||| || || ||||||||| |||||||||| ||||||||| | ||||||    
T  7001295 acttgagaaccacctatctgaaccaaacctaaaaacaacctttttgactttcaatcaggctaaagacatatatttaactttctctaacaacttgggaata 7001196  T
Q  126 gaagtaacaacattattgaagagtctgttattacgttcattccataaaatccaaacacacaaaagccaaatcagctgaag 205  Q
    ||||| |||||||||||||| || |||||||||||||| |||||||||| |||||| ||||| |||||||| || |||||    
T  7001195 gaagttacaacattattgaaaagcctgttattacgttcgttccataaaacccaaacgcacaagagccaaataagttgaag 7001116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 24 - 208
Target Start/End: Original strand, 20591744 - 20591929
Alignment:
Q  24 ggacttgagcaccacctatctgtaccaaacctaaaaacaacctttttggctttcaaccatgccaaagacataaatttaactttatctaacaacctaggaa 123  Q
    |||||||| ||||| |||||||| |||||| ||||  || ||||||||| ||||| ||| || ||||||| | |||| |||||||||| ||| ||||| |    
T  20591744 ggacttgaacaccatctatctgtgccaaacttaaaggcagcctttttggatttcatccaggctaaagacaaatatttcactttatctagcaaactaggca 20591843  T
Q  124 tagaagtaacaacatta-ttgaagagtctgttattacgttcattccataaaatccaaacacacaaaagccaaatcagctgaaggaa 208  Q
    ||| ||| ||||||||| ||||| |  || ||||| || ||||||||||| | ||| || ||||| |||||||| |||||||||||    
T  20591844 taggagttacaacattatttgaaaaacctattattgcgctcattccataagacccacacgcacaatagccaaataagctgaaggaa 20591929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 60 - 196
Target Start/End: Complemental strand, 29095002 - 29094866
Alignment:
Q  60 acaacctttttggctttcaaccatgccaaagacataaatttaactttatctaacaacctaggaatagaagtaacaacattattgaagagtctgttattac 159  Q
    |||||||||||  ||||||||||  | ||||| |  ||||| || ||||||||||| |  |||||||||||||||  ||||||||| |  | ||||||||    
T  29095002 acaacctttttaactttcaaccaccctaaagataacaatttgaccttatctaacaagcgtggaatagaagtaacagtattattgaacaagcggttattac 29094903  T
Q  160 gttcattccataaaatccaaacacacaaaagccaaat 196  Q
    |||||||||||| || ||||  |||||||||||||||    
T  29094902 gttcattccatataacccaagaacacaaaagccaaat 29094866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 198
Target Start/End: Complemental strand, 18359496 - 18359448
Alignment:
Q  150 ctgttattacgttcattccataaaatccaaacacacaaaagccaaatca 198  Q
    |||| ||| |||||||||||||||| ||||||||||  |||||||||||    
T  18359496 ctgtcattccgttcattccataaaacccaaacacactgaagccaaatca 18359448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 20 - 251
Target Start/End: Original strand, 26845475 - 26845706
Alignment:
Q  20 gaaaggacttgagcaccacctatctgtaccaaacctaaaaacaacctttttggctttcaaccatgccaaagacataaatttaactttatctaacaaccta 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||     
T  26845475 gaaaggacttgagcaccacctatctgtaccaaacctaaaaacaacctttttggctttcaaccatgctaaagacataaatttaactttatgtaacaacctg 26845574  T
Q  120 ggaatagaagtaacaacattattgaagagtctgttattacgttcattccataaaatccaaacacacaaaagccaaatcagctgaaggaaatctcgaaccg 219  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||    
T  26845575 agaatagaagtaacaacattattgaagagtctgttattacgttcattccataaaacccatacacacaaaagccaaatcagctgaaggaaatctcgaaccg 26845674  T
Q  220 ctttcccaccacctaacaaatgcacaaactga 251  Q
    |||| ||||||||| |||| || |||||||||    
T  26845675 ctttaccaccacctgacaagtgtacaaactga 26845706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 24 - 205
Target Start/End: Original strand, 47536876 - 47537057
Alignment:
Q  24 ggacttgagcaccacctatctgtaccaaacctaaaaacaacctttttggctttcaaccatgccaaagacataaatttaactttatctaacaacctaggaa 123  Q
    |||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||| || ||||||||| |||||||||||||||||||||| ||||    
T  47536876 ggacttgagcaccacctatctgaaccaaacctaaaaacaacttttttgcctttcaaccaggctaaagacatatatttaactttatctaacaacctgggaa 47536975  T
Q  124 tagaagtaacaacattattgaagagtctgttattacgttcattccataaaatccaaacacacaaaagccaaatcagctgaag 205  Q
    ||||||| |||||||||||||| ||||||||||||||||| |||||||||| |||||||||||| |||||||| ||||||||    
T  47536976 tagaagttacaacattattgaaaagtctgttattacgttcgttccataaaacccaaacacacaagagccaaataagctgaag 47537057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 24 - 208
Target Start/End: Complemental strand, 24124373 - 24124189
Alignment:
Q  24 ggacttgagcaccacctatctgtaccaaacctaaaaacaacctttttggctttcaaccatgccaaagacataaatttaactttatctaacaacctaggaa 123  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||||||||||||| | ||||    
T  24124373 ggacttgaacaccacctatctgtaccaaacctaaaaacaacctttttggctttcaaccaggctaaagacatatatttaactttatctaacaacatgggaa 24124274  T
Q  124 tagaagtaacaacattattgaagagtctgttattacgttcattccataaaatccaaacacacaaaagccaaatcagctgaaggaa 208  Q
    || |||| ||||||||||| ||||||||||||||||| ||||||||||||| |||||| |||||||| ||||| |||||||||||    
T  24124273 tataagttacaacattattaaagagtctgttattacgctcattccataaaacccaaacgcacaaaagtcaaataagctgaaggaa 24124189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 24 - 205
Target Start/End: Original strand, 11639574 - 11639755
Alignment:
Q  24 ggacttgagcaccacctatctgtaccaaacctaaaaacaacctttttggctttcaaccatgccaaagacataaatttaactttatctaacaacctaggaa 123  Q
    |||||||| ||||||||||||| ||||||||||||||| |||||||||||||||||||| || ||||||||| |||||||||||||||||||||| ||||    
T  11639574 ggacttgaacaccacctatctgaaccaaacctaaaaaccacctttttggctttcaaccaggctaaagacatatatttaactttatctaacaacctgggaa 11639673  T
Q  124 tagaagtaacaacattattgaagagtctgttattacgttcattccataaaatccaaacacacaaaagccaaatcagctgaag 205  Q
    ||||||| |||||||||||||| |   ||||||||||||| |||||||||| |||||| ||||| |||||||| ||||||||    
T  11639674 tagaagttacaacattattgaaaaccttgttattacgttcgttccataaaacccaaacgcacaagagccaaataagctgaag 11639755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 24 - 233
Target Start/End: Original strand, 50543829 - 50544038
Alignment:
Q  24 ggacttgagcaccacctatctgtaccaaacctaaaaacaacctttttggctttcaaccatgccaaagacataaatttaactttatctaacaacctaggaa 123  Q
    |||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||| || |    
T  50543829 ggacttgaacaccacctatctgtaccaaacctacacacaacctttttggctttcaaccaggctaaagacatatatttaactttatctaacaacctgggca 50543928  T
Q  124 tagaagtaacaacattattgaagagtctgttattacgttcattccataaaatccaaacacacaaaagccaaatcagctgaaggaaatctcgaaccgcttt 223  Q
    ||||||| ||||||||||||||||  || |||||||  || |||||||||| |||||| |||||||||||||| |||||||||||  |||||   |||||    
T  50543929 tagaagtgacaacattattgaagaacctattattacactcgttccataaaacccaaacgcacaaaagccaaataagctgaaggaaggctcgagttgcttt 50544028  T
Q  224 cccaccacct 233  Q
     |||||||||    
T  50544029 accaccacct 50544038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 26 - 205
Target Start/End: Original strand, 19221737 - 19221914
Alignment:
Q  26 acttgagcaccacctatctgtaccaaacctaaaaacaacctttttggctttcaaccatgccaaagacataaatttaactttatctaacaacctaggaata 125  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| || ||||| |||  ||||||||||||||||||||| ||||||    
T  19221737 acttgagcaccacctatctgtaccaaacctaaaaacaacatttttggctttcgaccaggctaaagatata--tttaactttatctaacaacctgggaata 19221834  T
Q  126 gaagtaacaacattattgaagagtctgttattacgttcattccataaaatccaaacacacaaaagccaaatcagctgaag 205  Q
    ||||| |||||||||||||| ||||||||||||||||| |||||||||| |||||| ||||| ||| |||| ||||||||    
T  19221835 gaagttacaacattattgaaaagtctgttattacgttcgttccataaaacccaaacgcacaagagctaaataagctgaag 19221914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 24 - 205
Target Start/End: Complemental strand, 32093446 - 32093268
Alignment:
Q  24 ggacttgagcaccacctatctgtaccaaacctaaaaacaacctttttggctttcaaccatgccaaagacataaatttaactttatctaacaacctaggaa 123  Q
    |||||||||||||||||||||| ||||||||||||||||   ||||||||||||||||| || ||||||||| |||||||||||||||||||||| ||||    
T  32093446 ggacttgagcaccacctatctgaaccaaacctaaaaaca---tttttggctttcaaccaggctaaagacatatatttaactttatctaacaacctgggaa 32093350  T
Q  124 tagaagtaacaacattattgaagagtctgttattacgttcattccataaaatccaaacacacaaaagccaaatcagctgaag 205  Q
    ||||||| |||||||||||||| || |||||||||||||| ||||||||||  ||||| ||||| |||||||| ||||||||    
T  32093349 tagaagttacaacattattgaaaagcctgttattacgttcgttccataaaactcaaacgcacaagagccaaataagctgaag 32093268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 24 - 251
Target Start/End: Complemental strand, 33121849 - 33121622
Alignment:
Q  24 ggacttgagcaccacctatctgtaccaaacctaaaaacaacctttttggctttcaaccatgccaaagacataaatttaactttatctaacaacctaggaa 123  Q
    |||||| | |||||| |||||| ||||||||||||||||| ||| ||| |||||||||| || ||||||||| |||||||||||||||||||| | ||||    
T  33121849 ggacttaaacaccacatatctgaaccaaacctaaaaacaatcttattgactttcaaccaggctaaagacatatatttaactttatctaacaacttgggaa 33121750  T
Q  124 tagaagtaacaacattattgaagagtctgttattacgttcattccataaaatccaaacacacaaaagccaaatcagctgaaggaaatctcgaaccgcttt 223  Q
    ||||||| |||| ||||||||| || ||||| |||||||| |||||||||| |||||| ||||| |||||||| |||||||| ||||||| ||| |||||    
T  33121749 tagaagttacaatattattgaaaagcctgttgttacgttcgttccataaaacccaaacgcacaatagccaaataagctgaagaaaatctctaacagcttt 33121650  T
Q  224 cccaccacctaacaaatgcacaaactga 251  Q
     || ||||||  ||| | ||||||||||    
T  33121649 acctccacctgtcaagttcacaaactga 33121622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 24 - 251
Target Start/End: Complemental strand, 8695423 - 8695196
Alignment:
Q  24 ggacttgagcaccacctatctgtaccaaacctaaaaacaacctttttggctttcaaccatgccaaagacataaatttaactttatctaacaacctaggaa 123  Q
    |||||||| ||||||||||||| |||||||||||| || ||||||||||||||||||||  | ||||||||| |||||||||||||||||||||| ||||    
T  8695423 ggacttgaacaccacctatctgaaccaaacctaaagaccacctttttggctttcaaccagactaaagacatatatttaactttatctaacaacctgggaa 8695324  T
Q  124 tagaagtaacaacattattgaagagtctgttattacgttcattccataaaatccaaacacacaaaagccaaatcagctgaaggaaatctcgaaccgcttt 223  Q
    ||||||| |||||||| ||||| |  ||| |||||||||| |||||||||| | |||| || || |||||| | |||||||| || |||| |   |||||    
T  8695323 tagaagttacaacattgttgaaaaccctgctattacgttcgttccataaaaccaaaacgcataagagccaactaagctgaagaaagtctctagtagcttt 8695224  T
Q  224 cccaccacctaacaaatgcacaaactga 251  Q
     || ||||||| ||| | ||||||||||    
T  8695223 acctccacctatcaagttcacaaactga 8695196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 24 - 251
Target Start/End: Complemental strand, 9047310 - 9047083
Alignment:
Q  24 ggacttgagcaccacctatctgtaccaaacctaaaaacaacctttttggctttcaaccatgccaaagacataaatttaactttatctaacaacctaggaa 123  Q
    |||||||| ||||||||||||| |||||||||||| || ||||||||||||||||||||  | ||||||||| |||||||||||||||||||||| ||||    
T  9047310 ggacttgaacaccacctatctgaaccaaacctaaagaccacctttttggctttcaaccagactaaagacatatatttaactttatctaacaacctgggaa 9047211  T
Q  124 tagaagtaacaacattattgaagagtctgttattacgttcattccataaaatccaaacacacaaaagccaaatcagctgaaggaaatctcgaaccgcttt 223  Q
    ||||||| |||||||| ||||| |  ||| |||||||||| |||||||||| | |||| || || |||||| | |||||||| || |||| |   |||||    
T  9047210 tagaagttacaacattgttgaaaaccctgctattacgttcgttccataaaaccaaaacgcataagagccaactaagctgaagaaagtctctagtagcttt 9047111  T
Q  224 cccaccacctaacaaatgcacaaactga 251  Q
     || ||||||| ||| | ||||||||||    
T  9047110 acctccacctatcaagttcacaaactga 9047083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 24 - 142
Target Start/End: Complemental strand, 25341866 - 25341748
Alignment:
Q  24 ggacttgagcaccacctatctgtaccaaacctaaaaacaacctttttggctttcaaccatgccaaagacataaatttaactttatctaacaacctaggaa 123  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |||||| ||||||||||||| | ||||    
T  25341866 ggacttgagcaccacatatctgtaccaaacctaaaaacaacctttttggctttcaaccaggctaaagacatatatttaattttatctaacaacttgggaa 25341767  T
Q  124 tagaagtaacaacattatt 142  Q
    ||||||| || ||||||||    
T  25341766 tagaagttaccacattatt 25341748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 24 - 210
Target Start/End: Original strand, 36635046 - 36635232
Alignment:
Q  24 ggacttgagcaccacctatctgtaccaaacctaaaaacaacctttttggctttcaaccatgccaaagacataaatttaactttatctaacaacctaggaa 123  Q
    |||||||| ||||||  ||| | | |||||||||||||||| || |||| ||||||||| || ||||||||| |||||||||| | ||||||||| ||||    
T  36635046 ggacttgaacaccacacatcagaagcaaacctaaaaacaactttattggttttcaaccaggctaaagacatatatttaactttgtttaacaacctgggaa 36635145  T
Q  124 tagaagtaacaacattattgaagagtctgttattacgttcattccataaaatccaaacacacaaaagccaaatcagctgaaggaaat 210  Q
    ||||||| ||||||||||| || ||  ||||||||| ||| || |||||||  ||||| ||||| |||||||| |||||||| ||||    
T  36635146 tagaagttacaacattattaaaaagcttgttattacattcgtttcataaaactcaaacgcacaagagccaaataagctgaagaaaat 36635232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 33 - 208
Target Start/End: Original strand, 23818194 - 23818369
Alignment:
Q  33 caccacctatctgtaccaaacctaaaaacaacctttttggctttcaaccatgccaaagacataaatttaactttatctaacaacctaggaatagaagtaa 132  Q
    |||||||||| ||| |||||||||||  || |||| |||||||| | ||| || ||||||||| |||| ||||||||||||||||| |||||||  ||      
T  23818194 caccacctatatgtgccaaacctaaaggcagccttcttggcttttatccaggcaaaagacatatatttcactttatctaacaacctgggaataggggttg 23818293  T
Q  133 caacattattgaagagtctgttattacgttcattccataaaatccaaacacacaaaagccaaatcagctgaaggaa 208  Q
    ||||||||||||| |  || ||||| || ||||||||||| | |||||| ||||| |||||||| |||||||||||    
T  23818294 caacattattgaaaaacctattattgcgctcattccataagacccaaacgcacaatagccaaataagctgaaggaa 23818369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 36 - 208
Target Start/End: Complemental strand, 43122186 - 43122014
Alignment:
Q  36 cacctatctgtaccaaacctaaaaacaacctttttggctttcaaccatgccaaagacataaatttaactttatctaacaacctaggaatagaagtaacaa 135  Q
    |||||||| || |||||||||||  || |||| |||||||||| | | || ||||||||| |||| |||||||| ||||||||||||||||  || ||||    
T  43122186 cacctatcggtgccaaacctaaaggcagccttcttggctttcatctaggctaaagacatatatttcactttatccaacaacctaggaataggggttacaa 43122087  T
Q  136 cattattgaagagtctgttattacgttcattccataaaatccaaacacacaaaagccaaatcagctgaaggaa 208  Q
    |||||||||| |  || ||||| || ||||| ||||| | |||||| ||||| |||||||| |||||||||||    
T  43122086 cattattgaaaaacctattattgcgctcatttcataagacccaaacgcacaatagccaaataagctgaaggaa 43122014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 33 - 208
Target Start/End: Complemental strand, 46909190 - 46909015
Alignment:
Q  33 caccacctatctgtaccaaacctaaaaacaacctttttggctttcaaccatgccaaagacataaatttaactttatctaacaacctaggaatagaagtaa 132  Q
    |||||||||||| ||||||||||||||   || ||||||||||||| ||| || ||||||||| ||||||||||||| |||| | | || |||| ||| |    
T  46909190 caccacctatctctaccaaacctaaaatttacatttttggctttcatccaggctaaagacatatatttaactttatccaacagcatgggcataggagtta 46909091  T
Q  133 caacattattgaagagtctgttattacgttcattccataaaatccaaacacacaaaagccaaatcagctgaaggaa 208  Q
    |||||||||| || || || || || || ||| ||||||| | |||| |||| | ||||||||| |||||||||||    
T  46909090 caacattattaaacagcctattgtttcgctcagtccataacacccaagcacaaagaagccaaataagctgaaggaa 46909015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 64 - 208
Target Start/End: Complemental strand, 49500823 - 49500679
Alignment:
Q  64 cctttttggctttcaaccatgccaaagacataaatttaactttatctaacaacctaggaatagaagtaacaacattattgaagagtctgttattacgttc 163  Q
    |||| |||||||||| ||| || |||| |||| |||| ||||||| ||||||||| |||||||  || |||||||||||||| |  || ||||| || ||    
T  49500823 ccttcttggctttcatccaggctaaaggcatatatttcactttatataacaacctgggaataggggttacaacattattgaaaaacctattattgcgctc 49500724  T
Q  164 attccataaaatccaaacacacaaaagccaaatcagctgaaggaa 208  Q
    ||||||||| | |||||| ||||| |||||||| |||||||||||    
T  49500723 attccataagacccaaacgcacaatagccaaataagctgaaggaa 49500679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 33 - 196
Target Start/End: Original strand, 46665097 - 46665259
Alignment:
Q  33 caccacctatctgtaccaaacctaaaaacaacctttttggctttcaaccatgccaaagacataaatttaactttatctaacaacctaggaatagaagtaa 132  Q
    ||||||||||| || |||||||||||  || |||| |||||||||| ||| || ||||||||| |||| ||||||||||||||||| | || ||  || |    
T  46665097 caccacctatcggtgccaaacctaaaggcagccttcttggctttcatccaggctaaagacatatatttcactttatctaacaacct-gaaacaggggtta 46665195  T
Q  133 caacattattgaagagtctgttattacgttcattccataaaatccaaacacacaaaagccaaat 196  Q
    ||||||||||||| | ||| ||||| || ||||||||||| | |||||| || || ||||||||    
T  46665196 caacattattgaaaaatctattattgcgctcattccataagacccaaacgcaaaatagccaaat 46665259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 49 - 208
Target Start/End: Original strand, 38898602 - 38898761
Alignment:
Q  49 caaacctaaaaacaacctttttggctttcaaccatgccaaagacataaatttaactttatctaacaacctaggaatagaagtaacaacattattgaagag 148  Q
    ||||||||||  ||||||| ||| |||||| | | || ||||||||| |||| |||||||||||||| || | |||||  || |||||||||||||| |     
T  38898602 caaacctaaaggcaaccttcttgactttcatctaggctaaagacatatatttcactttatctaacaatctggaaataggggttacaacattattgaaaaa 38898701  T
Q  149 tctgttattacgttcattccataaaatccaaacacacaaaagccaaatcagctgaaggaa 208  Q
     || ||||| || ||||| ||||| | |||||||||||| || ||||| |||||||||||    
T  38898702 cctattattgcgctcatttcataagacccaaacacacaatagtcaaataagctgaaggaa 38898761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 60 - 202
Target Start/End: Original strand, 45683820 - 45683962
Alignment:
Q  60 acaacctttttggctttcaaccatgccaaagacataaatttaactttatctaacaacctaggaatagaagtaacaacattattgaagagtctgttattac 159  Q
    ||||||||||| ||||||| |||  ||||||| |  ||||||||||||||||||||   ||| | |  | ||| |  ||||||||| || | ||| ||||    
T  45683820 acaacctttttagctttcagccaccccaaagataacaatttaactttatctaacaattgagggacaatattaatagaattattgaaaagacggttgttac 45683919  T
Q  160 gttcattccataaaatccaaacacacaaaagccaaatcagctg 202  Q
    |||||||||| |||| |||| ||||||| |||||||| |||||    
T  45683920 gttcattccacaaaacccaagcacacaacagccaaataagctg 45683962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 178
Target Start/End: Complemental strand, 2427702 - 2427658
Alignment:
Q  134 aacattattgaagagtctgttattacgttcattccataaaatcca 178  Q
    |||||||||||| |||||||||||||||||  |||||||||||||    
T  2427702 aacattattgaaaagtctgttattacgttccgtccataaaatcca 2427658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 184
Target Start/End: Complemental strand, 13797881 - 13797844
Alignment:
Q  147 agtctgttattacgttcattccataaaatccaaacaca 184  Q
    ||||| |||||||||||||||||||||| |||||||||    
T  13797881 agtctattattacgttcattccataaaacccaaacaca 13797844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 20 - 251
Target Start/End: Original strand, 26031096 - 26031327
Alignment:
Q  20 gaaaggacttgagcaccacctatctgtaccaaacctaaaaacaacctttttggctttcaaccatgccaaagacataaatttaactttatctaacaaccta 119  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||     
T  26031096 gaaaggacttgagcaccacctatctgtaccaaatctaaaaacaacctttttggctttcagccatgctaaagacataaatttaactttatctaacaacctg 26031195  T
Q  120 ggaatagaagtaacaacattattgaagagtctgttattacgttcattccataaaatccaaacacacaaaagccaaatcagctgaaggaaatctcgaaccg 219  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||  |||||||||||||| ||||||||||||||||||||||||||||    
T  26031196 ggaatagaagtaacaacattattaaagagtctgttattacgttcattccataaaactcaaacacacaaaagtcaaatcagctgaaggaaatctcgaaccg 26031295  T
Q  220 ctttcccaccacctaacaaatgcacaaactga 251  Q
    |||| ||||||||| |||| ||||||||||||    
T  26031296 ctttaccaccacctgacaagtgcacaaactga 26031327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 20 - 213
Target Start/End: Complemental strand, 45256364 - 45256171
Alignment:
Q  20 gaaaggacttgagcaccacctatctgtaccaaacctaaaaacaacctttttggctttcaaccatgccaaagacataaatttaactttatctaacaaccta 119  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| || ||||||||| |||||| |||||||||||||||     
T  45256364 gaaaggacttgagcaccacatatctgtaccaaacctaaaaacaacatttttggctttcaaccaggctaaagacatatatttaattttatctaacaacctg 45256265  T
Q  120 ggaatagaagtaacaacattattgaagagtctgttattacgttcattccataaaatccaaacacacaaaagccaaatcagctgaaggaaatctc 213  Q
    ||||||||||| || ||||||||||| |  |||| |||  |||| |||||||||| |||||||||||| |||||||| |||||||  |||||||    
T  45256264 ggaatagaagttaccacattattgaacaacctgtcattgtgttcgttccataaaacccaaacacacaagagccaaataagctgaaaaaaatctc 45256171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 24 - 187
Target Start/End: Original strand, 23679771 - 23679934
Alignment:
Q  24 ggacttgagcaccacctatctgtaccaaacctaaaaacaacctttttggctttcaaccatgccaaagacataaatttaactttatctaacaacctaggaa 123  Q
    ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||| ||||    
T  23679771 ggacttgagtaccacctatctgaaccaaacctaaaaacaacctttttggctttcaaccaggctaaagacatatatttaactttatctaacaacctgggaa 23679870  T
Q  124 tagaagtaacaacattattgaagagtctgttattacgttcattccataaaatccaaacacacaa 187  Q
    ||||||| |||||||||||||| ||| ||||||||||||| || |||||||  ||||| |||||    
T  23679871 tagaagttacaacattattgaaaagtttgttattacgttcgtttcataaaactcaaacgcacaa 23679934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 24 - 205
Target Start/End: Original strand, 17658438 - 17658620
Alignment:
Q  24 ggacttgagcaccacctatctgtaccaaacctaaaaaca-acctttttggctttcaaccatgccaaagacataaatttaactttatctaacaacctagga 122  Q
    |||||||||||||||||||||| ||||||||||||||||    ||||| ||||||||||| || ||||||||| |||||||||||||||||||||| |||    
T  17658438 ggacttgagcaccacctatctgaaccaaacctaaaaacagtttttttttgctttcaaccaggctaaagacatatatttaactttatctaacaacctggga 17658537  T
Q  123 atagaagtaacaacattattgaagagtctgttattacgttcattccataaaatccaaacacacaaaagccaaatcagctgaag 205  Q
    |||| ||| |||||| ||||||| || |||||||||||||| |||||||||| |||||| ||||| |||||||| ||||||||    
T  17658538 ataggagttacaacaatattgaaaagcctgttattacgttcgttccataaaacccaaacgcacaatagccaaataagctgaag 17658620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 24 - 208
Target Start/End: Original strand, 11155126 - 11155310
Alignment:
Q  24 ggacttgagcaccacctatctgtaccaaacctaaaaacaacctttttggctttcaaccatgccaaagacataaatttaactttatctaacaacctaggaa 123  Q
    |||||||| ||||||||| |||| |||||| ||||  || ||||||||| |||||  || || ||||||| | |||| |||||||||| ||||||||| |    
T  11155126 ggacttgaacaccacctacctgtgccaaacttaaaggcagcctttttggatttcatacaagctaaagacaaatatttcactttatctagcaacctaggca 11155225  T
Q  124 tagaagtaacaacattattgaagagtctgttattacgttcattccataaaatccaaacacacaaaagccaaatcagctgaaggaa 208  Q
    ||| ||| |||||||||||||| || || ||||| || ||||||||||| | ||| || ||||| |||||||| || ||||||||    
T  11155226 taggagttacaacattattgaaaagcctattattgcgctcattccataagacccacacgcacaatagccaaataagttgaaggaa 11155310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 24 - 208
Target Start/End: Original strand, 36156765 - 36156949
Alignment:
Q  24 ggacttgagcaccacctatctgtaccaaacctaaaaacaacctttttggctttcaaccatgccaaagacataaatttaactttatctaacaacctaggaa 123  Q
    |||||||| | |||||||||||| |||||| ||||  || ||||||||| ||||| |||  | ||||||| | |||| |||||||||| ||||||||| |    
T  36156765 ggacttgaacgccacctatctgtgccaaacttaaaggcagcctttttggatttcatccagactaaagacaaatatttcactttatctagcaacctaggca 36156864  T
Q  124 tagaagtaacaacattattgaagagtctgttattacgttcattccataaaatccaaacacacaaaagccaaatcagctgaaggaa 208  Q
    ||| | | |||||||||||||| || || ||||| || ||||| ||||| | ||| || ||||| |||||||| || ||||||||    
T  36156865 taggacttacaacattattgaaaagcctattattgcgctcattgcataagacccacacgcacaatagccaaataagttgaaggaa 36156949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 29470729 - 29470684
Alignment:
Q  25 gacttgagcaccacctatctgtaccaaacctaaaaacaaccttttt 70  Q
    ||||||| ||||||||||||| ||||||||||||||||| ||||||    
T  29470729 gacttgaacaccacctatctgaaccaaacctaaaaacaatcttttt 29470684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 181
Target Start/End: Original strand, 38046093 - 38046123
Alignment:
Q  151 tgttattacgttcattccataaaatccaaac 181  Q
    |||||||||||||||||||||||||||||||    
T  38046093 tgttattacgttcattccataaaatccaaac 38046123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 114
Target Start/End: Original strand, 12133978 - 12134026
Alignment:
Q  66 tttttggctttcaaccatgccaaagacataaatttaactttatctaaca 114  Q
    ||||||||||||| |||| ||||||| |  |||||||||||||||||||    
T  12133978 tttttggctttcagccatcccaaagataacaatttaactttatctaaca 12134026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 140; Significance: 2e-73; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 24 - 251
Target Start/End: Original strand, 53779653 - 53779880
Alignment:
Q  24 ggacttgagcaccacctatctgtaccaaacctaaaaacaacctttttggctttcaaccatgccaaagacataaatttaactttatctaacaacctaggaa 123  Q
    |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||| | |||||||||||||||||||||| ||||    
T  53779653 ggactttagcaccacctatctgtaccaaacctaaaaacaacttttttggctttcaaccaggctaaagacaaatatttaactttatctaacaacctgggaa 53779752  T
Q  124 tagaagtaacaacattattgaagagtctgttattacgttcattccataaaatccaaacacacaaaagccaaatcagctgaaggaaatctcgaaccgcttt 223  Q
    ||||||| |||||||| ||||| || |||||||| ||||| |||||||||| ||||||||||||||||||||| |||||||| || || ||| |||||||    
T  53779753 tagaagttacaacatttttgaaaagcctgttattgcgttcgttccataaaacccaaacacacaaaagccaaataagctgaagaaagtcacgagccgcttt 53779852  T
Q  224 cccaccacctaacaaatgcacaaactga 251  Q
     ||||||||| |||||| ||||||||||    
T  53779853 accaccacctgacaaattcacaaactga 53779880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 15 - 247
Target Start/End: Complemental strand, 10563850 - 10563618
Alignment:
Q  15 tattagaaaggacttgagcaccacctatctgtaccaaacctaaaaacaacctttttggctttcaaccatgccaaagacataaatttaactttatctaaca 114  Q
    |||| ||| |||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||| || ||||||| | ||||||||||||||||||    
T  10563850 tattggaagggacttgagcaccaactatctgtaccaaacctaaaaacaactttttttgctttcaaccaggctaaagacaaatatttaactttatctaaca 10563751  T
Q  115 acctaggaatagaagtaacaacattattgaagagtctgttattacgttcattccataaaatccaaacacacaaaagccaaatcagctgaaggaaatctcg 214  Q
    |||| ||||||||||| |||||||| ||||| || |||||||| ||||| |||||||||| ||||||||||||||||||||| |||||||| || || ||    
T  10563750 acctgggaatagaagttacaacatttttgaaaagcctgttattgcgttcgttccataaaacccaaacacacaaaagccaaataagctgaagaaagtcacg 10563651  T
Q  215 aaccgctttcccaccacctaacaaatgcacaaa 247  Q
    | ||||||| ||||||||| |||||| ||||||    
T  10563650 agccgctttaccaccacctgacaaatacacaaa 10563618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 24 - 250
Target Start/End: Original strand, 18935276 - 18935502
Alignment:
Q  24 ggacttgagcaccacctatctgtaccaaacctaaaaacaacctttttggctttcaaccatgccaaagacataaatttaactttatctaacaacctaggaa 123  Q
    |||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||| || |||||| || |||||||||||||||||||||| ||||    
T  18935276 ggacttgaacaccaactatctgtaccaaacctaaaaacaacatttttggctttcaaccaggctaaagacttatatttaactttatctaacaacctgggaa 18935375  T
Q  124 tagaagtaacaacattattgaagagtctgttattacgttcattccataaaatccaaacacacaaaagccaaatcagctgaaggaaatctcgaaccgcttt 223  Q
    ||||||| ||||||||||| ||||||||||||||||| ||||||||||||| |||||  |||||||||||||| |||||||||||  | |||   |||||    
T  18935376 tagaagttacaacattattaaagagtctgttattacgctcattccataaaacccaaatgcacaaaagccaaataagctgaaggaaggcgcgagttgcttt 18935475  T
Q  224 cccaccacctaacaaatgcacaaactg 250  Q
     ||||||||| |||| | |||||||||    
T  18935476 gccaccacctgacaagttcacaaactg 18935502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 24 - 251
Target Start/End: Complemental strand, 29213512 - 29213286
Alignment:
Q  24 ggacttgagcaccacctatctgtaccaaacctaaaaacaacctttttggctttcaaccatgccaaagacataaatttaactttatctaacaacctaggaa 123  Q
    |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| | || ||||||| | |||||||||||||||||||||| ||||    
T  29213512 ggacttgagcaccacctatctgtaccaaacctaaaa-caacttttttggctttcaactaggctaaagacaaatatttaactttatctaacaacctgggaa 29213414  T
Q  124 tagaagtaacaacattattgaagagtctgttattacgttcattccataaaatccaaacacacaaaagccaaatcagctgaaggaaatctcgaaccgcttt 223  Q
    ||||||| |||||||| ||||| ||| ||||||| ||||| |||||||||| ||||||||||||||||||||| || ||||| || || ||| |||||||    
T  29213413 tagaagttacaacatttttgaaaagtttgttattgcgttcgttccataaaacccaaacacacaaaagccaaataagttgaagaaagtcacgagccgcttt 29213314  T
Q  224 cccaccacctaacaaatgcacaaactga 251  Q
     ||||||||| ||| || ||||||||||    
T  29213313 accaccacctgacagattcacaaactga 29213286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 24 - 251
Target Start/End: Complemental strand, 34322851 - 34322624
Alignment:
Q  24 ggacttgagcaccacctatctgtaccaaacctaaaaacaacctttttggctttcaaccatgccaaagacataaatttaactttatctaacaacctaggaa 123  Q
    ||||||||  ||||| |||||| ||||||||||||||||||||| ||||||||||||||  | ||||||||| |||||||||||||||||||||||||||    
T  34322851 ggacttgaataccacatatctgaaccaaacctaaaaacaaccttattggctttcaaccagcctaaagacatatatttaactttatctaacaacctaggaa 34322752  T
Q  124 tagaagtaacaacattattgaagagtctgttattacgttcattccataaaatccaaacacacaaaagccaaatcagctgaaggaaatctcgaaccgcttt 223  Q
    ||||||| |||||||||||||| ||||||||||||||||| |||||||||| |||||| ||||| |||||||| |||||||| ||||||| ||  |||||    
T  34322751 tagaagttacaacattattgaaaagtctgttattacgttcgttccataaaacccaaacgcacaagagccaaataagctgaagaaaatctctaatagcttt 34322652  T
Q  224 cccaccacctaacaaatgcacaaactga 251  Q
     || ||||||  ||| | ||||||||||    
T  34322651 acctccacctgtcaagttcacaaactga 34322624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 24 - 204
Target Start/End: Complemental strand, 12881217 - 12881037
Alignment:
Q  24 ggacttgagcaccacctatctgtaccaaacctaaaaacaacctttttggctttcaaccatgccaaagacataaatttaactttatctaacaacctaggaa 123  Q
    |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| || ||||||||| |||||||||||||||||||||| ||||    
T  12881217 ggacttgagcaccacctatctgaaccaaacctaaaaacaacttttttggctttcaaccaggctaaagacatatatttaactttatctaacaacctgggaa 12881118  T
Q  124 tagaagtaacaacattattgaagagtctgttattacgttcattccataaaatccaaacacacaaaagccaaatcagctgaa 204  Q
    ||||||| |||||||||||||| || |||||||||||||| |||||||||| ||||||  |||| |||||||| |||||||    
T  12881117 tagaagttacaacattattgaaaagcctgttattacgttcgttccataaaacccaaacgaacaagagccaaataagctgaa 12881037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 24 - 202
Target Start/End: Complemental strand, 53487485 - 53487307
Alignment:
Q  24 ggacttgagcaccacctatctgtaccaaacctaaaaacaacctttttggctttcaaccatgccaaagacataaatttaactttatctaacaacctaggaa 123  Q
    |||||||| |||||| |||||| ||||||||||||||||||||| |||||||| ||||| || ||||||||| |||||||||||||||||||||| ||||    
T  53487485 ggacttgaacaccacatatctgaaccaaacctaaaaacaaccttattggcttttaaccaggctaaagacatatatttaactttatctaacaacctgggaa 53487386  T
Q  124 tagaagtaacaacattattgaagagtctgttattacgttcattccataaaatccaaacacacaaaagccaaatcagctg 202  Q
    |||||||||||||||||||||| || ||||||||||||||||||||||||| |||||| ||||| |||||||| |||||    
T  53487385 tagaagtaacaacattattgaaaagcctgttattacgttcattccataaaacccaaacgcacaagagccaaataagctg 53487307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 24 - 205
Target Start/End: Original strand, 20395204 - 20395385
Alignment:
Q  24 ggacttgagcaccacctatctgtaccaaacctaaaaacaacctttttggctttcaaccatgccaaagacataaatttaactttatctaacaacctaggaa 123  Q
    |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| || ||||||||| ||||||||||||||||||| || ||||    
T  20395204 ggacttgagcaccacctatctgaaccaaacctaaaaacaacatttttggctttcaaccaggctaaagacatatatttaactttatctaacaatctgggaa 20395303  T
Q  124 tagaagtaacaacattattgaagagtctgttattacgttcattccataaaatccaaacacacaaaagccaaatcagctgaag 205  Q
    ||||||| |||||||||||||| || || ||||||||||| |||||||||| |||||| ||||| |||||||| ||||||||    
T  20395304 tagaagttacaacattattgaaaagcctattattacgttcgttccataaaacccaaacgcacaagagccaaataagctgaag 20395385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 24 - 251
Target Start/End: Complemental strand, 18107088 - 18106861
Alignment:
Q  24 ggacttgagcaccacctatctgtaccaaacctaaaaacaacctttttggctttcaaccatgccaaagacataaatttaactttatctaacaacctaggaa 123  Q
    |||||||| |||||| |||||| ||||||||||||||||||||| |||||||||||||| || ||||||||| |||||||||||||||||||| | ||||    
T  18107088 ggacttgaacaccacatatctgaaccaaacctaaaaacaaccttattggctttcaaccaggctaaagacatatatttaactttatctaacaacttgggaa 18106989  T
Q  124 tagaagtaacaacattattgaagagtctgttattacgttcattccataaaatccaaacacacaaaagccaaatcagctgaaggaaatctcgaaccgcttt 223  Q
    ||||||| |||||||||||||| |||||||| |||||||| ||||||||||  ||||| ||||| |||||||| |||||||| ||||||| |||  ||||    
T  18106988 tagaagttacaacattattgaaaagtctgttgttacgttcgttccataaaactcaaacgcacaatagccaaataagctgaagaaaatctctaacaacttt 18106889  T
Q  224 cccaccacctaacaaatgcacaaactga 251  Q
     || ||||||  ||| | ||||||||||    
T  18106888 acctccacctgtcaagttcacaaactga 18106861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 24 - 251
Target Start/End: Complemental strand, 30274344 - 30274117
Alignment:
Q  24 ggacttgagcaccacctatctgtaccaaacctaaaaacaacctttttggctttcaaccatgccaaagacataaatttaactttatctaacaacctaggaa 123  Q
    |||||||| |||||| |||||| ||||||||||||||||||||| |||||||||||||| || ||||||||| ||||||||||||||||||| || ||||    
T  30274344 ggacttgaacaccacatatctgaaccaaacctaaaaacaaccttattggctttcaaccaggctaaagacatatatttaactttatctaacaatctgggaa 30274245  T
Q  124 tagaagtaacaacattattgaagagtctgttattacgttcattccataaaatccaaacacacaaaagccaaatcagctgaaggaaatctcgaaccgcttt 223  Q
    ||||||| |||||||||||||| |  |||||||||||||| |||||||||| |||||| ||||| |||||||| |||||||  ||||||| ||  |||||    
T  30274244 tagaagttacaacattattgaaaaacctgttattacgttcgttccataaaacccaaacgcacaagagccaaataagctgaaaaaaatctctaatagcttt 30274145  T
Q  224 cccaccacctaacaaatgcacaaactga 251  Q
     || ||||||  ||| | ||||||||||    
T  30274144 acctccacctgtcaagttcacaaactga 30274117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 24 - 251
Target Start/End: Original strand, 42777846 - 42778073
Alignment:
Q  24 ggacttgagcaccacctatctgtaccaaacctaaaaacaacctttttggctttcaaccatgccaaagacataaatttaactttatctaacaacctaggaa 123  Q
    ||||||||||||||| | || | ||||||||||||||||||||| |||||||||||||| || ||||||||| |||| ||||| ||||||||||| ||||    
T  42777846 ggacttgagcaccacatctcagaaccaaacctaaaaacaaccttattggctttcaaccaggctaaagacatatatttgactttgtctaacaacctgggaa 42777945  T
Q  124 tagaagtaacaacattattgaagagtctgttattacgttcattccataaaatccaaacacacaaaagccaaatcagctgaaggaaatctcgaaccgcttt 223  Q
    ||||||| |||||||||||||| || || ||||||||||| |||| ||  |||||||| |||||||||||||| |||||||| || |||| |   |||||    
T  42777946 tagaagttacaacattattgaaaagcctattattacgttcgttccgtaccatccaaacgcacaaaagccaaataagctgaagaaagtctctagtagcttt 42778045  T
Q  224 cccaccacctaacaaatgcacaaactga 251  Q
    ||| ||||||  ||||| ||||||||||    
T  42778046 ccctccacctgtcaaattcacaaactga 42778073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 24 - 251
Target Start/End: Original strand, 449659 - 449886
Alignment:
Q  24 ggacttgagcaccacctatctgtaccaaacctaaaaacaacctttttggctttcaaccatgccaaagacataaatttaactttatctaacaacctaggaa 123  Q
    |||||||| |||||| |||||| |||||||||||||| |||||| |||||||||||||| || ||||| ||| ||||||||||||||||||| || ||||    
T  449659 ggacttgaacaccacatatctgaaccaaacctaaaaataaccttattggctttcaaccaggctaaagatatatatttaactttatctaacaaactgggaa 449758  T
Q  124 tagaagtaacaacattattgaagagtctgttattacgttcattccataaaatccaaacacacaaaagccaaatcagctgaaggaaatctcgaaccgcttt 223  Q
    ||||||| |||||||||||||| || ||||||||| |||| |||||||| | | |||| ||||| |||||||| || ||||| ||||||| ||  |||||    
T  449759 tagaagttacaacattattgaaaagcctgttattatgttcgttccataatacctaaacgcacaagagccaaataagttgaagaaaatctctaatagcttt 449858  T
Q  224 cccaccacctaacaaatgcacaaactga 251  Q
     || ||||||  ||| | ||||||||||    
T  449859 acctccacctgtcaagttcacaaactga 449886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 24 - 205
Target Start/End: Original strand, 31863874 - 31864055
Alignment:
Q  24 ggacttgagcaccacctatctgtaccaaacctaaaaacaacctttttggctttcaaccatgccaaagacataaatttaactttatctaacaacctaggaa 123  Q
    |||||||| ||||| ||||||| ||||||| |||| || |||||||||||||||||||| || ||||||||| |||||||||||||||| ||||| ||||    
T  31863874 ggacttgaacaccaactatctgaaccaaacttaaagaccacctttttggctttcaaccaggctaaagacatatatttaactttatctaataacctgggaa 31863973  T
Q  124 tagaagtaacaacattattgaagagtctgttattacgttcattccataaaatccaaacacacaaaagccaaatcagctgaag 205  Q
    ||||||| |||||||||||||| |  |||||||||||||| || ||||||| |||||| || |  |||||||| ||||||||    
T  31863974 tagaagttacaacattattgaaaaccctgttattacgttcgtttcataaaacccaaacgcatacgagccaaataagctgaag 31864055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 40 - 251
Target Start/End: Original strand, 42823068 - 42823278
Alignment:
Q  40 tatctgtaccaaacctaaaaacaacctttttggctttcaaccatgccaaagacataaatttaactttatctaacaacctaggaatagaagtaacaacatt 139  Q
    |||||| ||||||||||||||||| ||| |||||||||||||| || ||||||||| ||||||||||||||||||||||  |||||||||| |||| |||    
T  42823068 tatctgaaccaaacctaaaaacaatcttattggctttcaaccaggctaaagacatatatttaactttatctaacaacctgagaatagaagttacaa-att 42823166  T
Q  140 attgaagagtctgttattacgttcattccataaaatccaaacacacaaaagccaaatcagctgaaggaaatctcgaaccgctttcccaccacctaacaaa 239  Q
    |||||| ||  ||||||||||||| ||||||||||  ||||| ||||| |||||||| |||||||| |||| || ||  ||||| || ||||||  |||     
T  42823167 attgaaaagcttgttattacgttcgttccataaaactcaaacgcacaagagccaaatgagctgaagaaaatttctaatagctttacctccacctgtcaag 42823266  T
Q  240 tgcacaaactga 251  Q
    | ||||||||||    
T  42823267 ttcacaaactga 42823278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 1844789 - 1844731
Alignment:
Q  24 ggacttgagcaccacctatctgtaccaaacctaaaaacaacctttttggctttcaacca 82  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||    
T  1844789 ggacttgagcaccacctatctgaaccaaacctaaaaacaacctttttgccattcaacca 1844731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 24 - 92
Target Start/End: Original strand, 55854402 - 55854470
Alignment:
Q  24 ggacttgagcaccacctatctgtaccaaacctaaaaacaacctttttggctttcaaccatgccaaagac 92  Q
    |||||||| |||||| |||||| ||||||||||||||||||||| |||||||||||||| || ||||||    
T  55854402 ggacttgaacaccacatatctgaaccaaacctaaaaacaaccttattggctttcaaccaggctaaagac 55854470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 205
Target Start/End: Complemental strand, 29554275 - 29554091
Alignment:
Q  21 aaaggacttgagcaccacctatctgtaccaaacctaaaaacaacctttttggctttcaaccatgccaaagacataaatttaactttatctaacaacctag 120  Q
    ||||| ||||| ||||||||||| |||||||||  ||| | | | ||||| ||||||||||| || |||||||   |||| ||||| || ||||||||||    
T  29554275 aaagggcttgaccaccacctatcagtaccaaacgaaaataaagcttttttagctttcaaccaagctaaagacaagtattttactttgtccaacaacctag 29554176  T
Q  121 gaatagaagtaacaacattattgaagagtctgttattacgttcattccataaaatccaaacacacaaaagccaaatcagctgaag 205  Q
    | |||| ||||| |  ||||||||| |  || |||||||||||| ||||||| | |||  |||| | ||||||||| || |||||    
T  29554175 gcataggagtaatagaattattgaacaacctattattacgttcagtccataatacccaggcacaaagaagccaaatgagttgaag 29554091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 25 - 95
Target Start/End: Complemental strand, 52741369 - 52741299
Alignment:
Q  25 gacttgagcaccacctatctgtaccaaacctaaaaacaacctttttggctttcaaccatgccaaagacata 95  Q
    |||||||||||||| | || | ||||||||||||||||||||| ||||||||||||||  | |||||||||    
T  52741369 gacttgagcaccacatctcagaaccaaacctaaaaacaaccttattggctttcaaccagcctaaagacata 52741299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 60 - 202
Target Start/End: Complemental strand, 46639486 - 46639344
Alignment:
Q  60 acaacctttttggctttcaaccatgccaaagacataaatttaactttatctaacaacctaggaatagaagtaacaacattattgaagagtctgttattac 159  Q
    ||||||||||| ||||||| |||  ||||||| |  ||||||||||||||||||||   ||| | |  | ||| |  ||||||||| || | ||| ||||    
T  46639486 acaacctttttagctttcagccaccccaaagataacaatttaactttatctaacaattgagggacaatattaatagaattattgaaaagacggttgttac 46639387  T
Q  160 gttcattccataaaatccaaacacacaaaagccaaatcagctg 202  Q
    |||||||||| |||| |||| ||||||| |||||||| |||||    
T  46639386 gttcattccacaaaacccaagcacacaacagccaaataagctg 46639344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 198
Target Start/End: Complemental strand, 2822443 - 2822395
Alignment:
Q  150 ctgttattacgttcattccataaaatccaaacacacaaaagccaaatca 198  Q
    |||| ||| |||||||||||||||| ||||||||||  |||||||||||    
T  2822443 ctgtcattccgttcattccataaaacccaaacacactgaagccaaatca 2822395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 128; Significance: 3e-66; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 24 - 251
Target Start/End: Complemental strand, 17874333 - 17874106
Alignment:
Q  24 ggacttgagcaccacctatctgtaccaaacctaaaaacaacctttttggctttcaaccatgccaaagacataaatttaactttatctaacaacctaggaa 123  Q
    ||||||||||||||| ||| ||| ||||||||||||||||| ||||||||||||||||| || ||||||| | |||||||||||||||||||||| | ||    
T  17874333 ggacttgagcaccacttatatgtgccaaacctaaaaacaacttttttggctttcaaccaggctaaagacaaatatttaactttatctaacaacctggaaa 17874234  T
Q  124 tagaagtaacaacattattgaagagtctgttattacgttcattccataaaatccaaacacacaaaagccaaatcagctgaaggaaatctcgaaccgcttt 223  Q
    ||||||| |||||||| ||||| || |||||||| ||||| |||||||||||||||||||||||||||||||| |||||||| || ||  || |||||||    
T  17874233 tagaagtgacaacatttttgaacagcctgttattgcgttcgttccataaaatccaaacacacaaaagccaaataagctgaagaaagtcatgagccgcttt 17874134  T
Q  224 cccaccacctaacaaatgcacaaactga 251  Q
     ||||||||| |||||| ||||||||||    
T  17874133 accaccacctgacaaattcacaaactga 17874106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 24 - 203
Target Start/End: Complemental strand, 17079723 - 17079544
Alignment:
Q  24 ggacttgagcaccacctatctgtaccaaacctaaaaacaacctttttggctttcaaccatgccaaagacataaatttaactttatctaacaacctaggaa 123  Q
    |||||||| |||||| |||||| ||||||||||||||| |||||||||||||||||||| || ||||||||| |||||||||||||||||||||| ||||    
T  17079723 ggacttgaacaccacttatctgaaccaaacctaaaaaccacctttttggctttcaaccaggctaaagacatatatttaactttatctaacaacctgggaa 17079624  T
Q  124 tagaagtaacaacattattgaagagtctgttattacgttcattccataaaatccaaacacacaaaagccaaatcagctga 203  Q
    ||||||| |||||||||||||| || ||||||||||||||||||||||||| | |||| ||||| |||||||| ||||||    
T  17079623 tagaagttacaacattattgaaaagcctgttattacgttcattccataaaacctaaacgcacaagagccaaataagctga 17079544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 24 - 205
Target Start/End: Complemental strand, 11061388 - 11061207
Alignment:
Q  24 ggacttgagcaccacctatctgtaccaaacctaaaaacaacctttttggctttcaaccatgccaaagacataaatttaactttatctaacaacctaggaa 123  Q
    |||||||||||||||||||||| ||||||| |||||||| | ||||| ||||||||||| || || |||||| |||||||||||||||||||||| ||||    
T  11061388 ggacttgagcaccacctatctgaaccaaacttaaaaacagctttttttgctttcaaccaggctaaggacatatatttaactttatctaacaacctgggaa 11061289  T
Q  124 tagaagtaacaacattattgaagagtctgttattacgttcattccataaaatccaaacacacaaaagccaaatcagctgaag 205  Q
    ||| ||| |||||||||||||| || |||||||||||||| ||||||||||||||||| ||||| |||||||| ||||||||    
T  11061288 taggagttacaacattattgaaaagcctgttattacgttcgttccataaaatccaaacgcacaatagccaaataagctgaag 11061207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 24 - 251
Target Start/End: Complemental strand, 9199784 - 9199557
Alignment:
Q  24 ggacttgagcaccacctatctgtaccaaacctaaaaacaacctttttggctttcaaccatgccaaagacataaatttaactttatctaacaacctaggaa 123  Q
    ||||||||||||||| | || | ||||||||||||||||||||| |||||||||||||| || ||||||||| |||| ||||| ||||||| ||| ||||    
T  9199784 ggacttgagcaccacatctcagaaccaaacctaaaaacaaccttattggctttcaaccaggctaaagacatatatttcactttgtctaacagcctgggaa 9199685  T
Q  124 tagaagtaacaacattattgaagagtctgttattacgttcattccataaaatccaaacacacaaaagccaaatcagctgaaggaaatctcgaaccgcttt 223  Q
    ||||||| | |||||||||||| || |||||||||||||| ||||||||||| ||||| ||| |||||||||| | |||||| || |||| |   |||||    
T  9199684 tagaagttaaaacattattgaaaagcctgttattacgttcgttccataaaattcaaacgcacgaaagccaaataaactgaagaaagtctctagtagcttt 9199585  T
Q  224 cccaccacctaacaaatgcacaaactga 251  Q
    ||| ||||||  ||||| ||||||||||    
T  9199584 ccctccacctgtcaaattcacaaactga 9199557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 31 - 142
Target Start/End: Original strand, 26526146 - 26526257
Alignment:
Q  31 agcaccacctatctgtaccaaacctaaaaacaacctttttggctttcaaccatgccaaagacataaatttaactttatctaacaacctaggaatagaagt 130  Q
    ||||||| ||||||||||||||||||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||    
T  26526146 agcaccatctatctgtaccaaacctaaaaacaacctttttaactttcaaccatgctaaagacataaatttaactttatctaacaacctgggaatagaagt 26526245  T
Q  131 aacaacattatt 142  Q
    ||||||||||||    
T  26526246 aacaacattatt 26526257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 25 - 106
Target Start/End: Original strand, 33722662 - 33722743
Alignment:
Q  25 gacttgagcaccacctatctgtaccaaacctaaaaacaacctttttggctttcaaccatgccaaagacataaatttaacttt 106  Q
    |||||||||||||| ||||||||||||||||||||||||| |||||  |||||||||| || ||| ||||| ||||||||||    
T  33722662 gacttgagcaccacttatctgtaccaaacctaaaaacaacatttttaactttcaaccaggctaaaaacatatatttaacttt 33722743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 105 - 196
Target Start/End: Complemental strand, 23066501 - 23066410
Alignment:
Q  105 ttatctaacaacctaggaatagaagtaacaacattattgaagagtctgttattacgttcattccataaaatccaaacacacaaaagccaaat 196  Q
    ||||||||||| | |||||||| |||||||  ||||||||| |  | |||||||||||||||||||| || ||||  |||||||||||||||    
T  23066501 ttatctaacaagcgaggaatagtagtaacagtattattgaacaagcggttattacgttcattccatataacccaagaacacaaaagccaaat 23066410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 208
Target Start/End: Original strand, 15311274 - 15311395
Alignment:
Q  87 aaagacataaatttaactttatctaacaacctaggaatagaagtaacaacattattgaagagtctgttattacgttcattccataaaatccaaacacaca 186  Q
    ||||||||| |||| |||||||  ||||||||  | |||| ||| ||| ||||||| || || || |||||||  |||||||||||||  ||| |||| |    
T  15311274 aaagacatatattttactttatgcaacaacctgagcataggagttacaccattattaaacagcctattattacactcattccataaaactcaagcacaga 15311373  T
Q  187 aaagccaaatcagctgaaggaa 208  Q
     ||||||||| |||||||||||    
T  15311374 gaagccaaataagctgaaggaa 15311395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 208
Target Start/End: Original strand, 15316568 - 15316689
Alignment:
Q  87 aaagacataaatttaactttatctaacaacctaggaatagaagtaacaacattattgaagagtctgttattacgttcattccataaaatccaaacacaca 186  Q
    ||||||||| |||| |||||||  ||||||||  | |||| ||| ||| ||||||| || || || |||||||  |||||||||||||  ||| |||| |    
T  15316568 aaagacatatattttactttatgcaacaacctgagcataggagttacaccattattaaacagcctattattacactcattccataaaactcaagcacaga 15316667  T
Q  187 aaagccaaatcagctgaaggaa 208  Q
     ||||||||| |||||||||||    
T  15316668 gaagccaaataagctgaaggaa 15316689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 196
Target Start/End: Complemental strand, 2365560 - 2365511
Alignment:
Q  147 agtctgttattacgttcattccataaaatccaaacacacaaaagccaaat 196  Q
    ||||||||||||  |||| |||| |||||| |||||||||||||||||||    
T  2365560 agtctgttattaaattcagtccacaaaatctaaacacacaaaagccaaat 2365511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 196
Target Start/End: Original strand, 19256749 - 19256825
Alignment:
Q  120 ggaatagaagtaacaacattattgaagagtctgttattacgttcattccataaaatccaaacacacaaaagccaaat 196  Q
    |||||||| |||||||||||||| ||||| |  ||||| ||||||||||| | || | | ||||||| |||||||||    
T  19256749 ggaatagacgtaacaacattattaaagaggcaattatttcgttcattccaaacaacctagacacacagaagccaaat 19256825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 196
Target Start/End: Complemental strand, 31297604 - 31297504
Alignment:
Q  96 aatttaactttatctaacaacctaggaatagaagtaacaacattattgaagagtctgttattacgttcattccataaaatccaaacacacaaaagccaaa 195  Q
    ||||| || ||||||||||| | ||||  || |||||||| ||||||||| |  | ||| ||||||||||| |||| || ||||  ||||||||||||||    
T  31297604 aatttgaccttatctaacaagcgaggagcagtagtaacaatattattgaacaaacggttgttacgttcatttcatataacccaagaacacaaaagccaaa 31297505  T
Q  196 t 196  Q
    |    
T  31297504 t 31297504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 125; Significance: 2e-64; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 20 - 168
Target Start/End: Original strand, 30273604 - 30273752
Alignment:
Q  20 gaaaggacttgagcaccacctatctgtaccaaacctaaaaacaacctttttggctttcaaccatgccaaagacataaatttaactttatctaacaaccta 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||     
T  30273604 gaaaggacttgagcaccacctatctgtaccaaacctaaaaacaacctttttgtctttcaaccatgctaaagacatacatttaactttatctaacaacctg 30273703  T
Q  120 ggaatagaagtaacaacattattgaagagtctgttattacgttcattcc 168  Q
     ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  30273704 agaatagaagtaacaacattattgaagagtctcttattacgttcattcc 30273752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 24 - 251
Target Start/End: Complemental strand, 3000280 - 3000053
Alignment:
Q  24 ggacttgagcaccacctatctgtaccaaacctaaaaacaacctttttggctttcaaccatgccaaagacataaatttaactttatctaacaacctaggaa 123  Q
    |||||||| |||||| |||||| ||||||||||||||||||||| |||||||||||||| || ||||||||| |||||||||||||||||||| | ||||    
T  3000280 ggacttgaacaccacatatctgaaccaaacctaaaaacaaccttattggctttcaaccaggctaaagacatatatttaactttatctaacaacttgggaa 3000181  T
Q  124 tagaagtaacaacattattgaagagtctgttattacgttcattccataaaatccaaacacacaaaagccaaatcagctgaaggaaatctcgaaccgcttt 223  Q
    ||||||| |||||||||||||| |||||||| |||||||| ||||||||||  ||||| ||||| |||||||| |||||||| ||||||| |||  ||||    
T  3000180 tagaagttacaacattattgaaaagtctgttgttacgttcgttccataaaactcaaacgcacaatagccaaataagctgaagaaaatctctaacaacttt 3000081  T
Q  224 cccaccacctaacaaatgcacaaactga 251  Q
     || ||||||  ||| | ||||||||||    
T  3000080 acctccacctgtcaagttcacaaactga 3000053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 28 - 251
Target Start/End: Original strand, 7075724 - 7075947
Alignment:
Q  28 ttgagcaccacctatctgtaccaaacctaaaaacaacctttttggctttcaaccatgccaaagacataaatttaactttatctaacaacctaggaataga 127  Q
    |||| |||||| |||||| |||||| || |||||||| || |||||||||||||| || ||||||||| ||||||||||||||||||||||  | |||||    
T  7075724 ttgaacaccacatatctgaaccaaatctgaaaacaactttattggctttcaaccaggctaaagacatatatttaactttatctaacaacctgagcataga 7075823  T
Q  128 agtaacaacattattgaagagtctgttattacgttcattccataaaatccaaacacacaaaagccaaatcagctgaaggaaatctcgaaccgctttccca 227  Q
    ||| |||||||||||||| ||  ||||||||||||  ||||||||||||||||| ||||| |||||||| |||||||| ||||||| ||  ||||| ||     
T  7075824 agttacaacattattgaaaagcttgttattacgtttgttccataaaatccaaacgcacaagagccaaataagctgaagaaaatctctaatagctttacct 7075923  T
Q  228 ccacctaacaaatgcacaaactga 251  Q
    ||||||  ||| | ||||||||||    
T  7075924 ccacctgtcaagttcacaaactga 7075947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 24 - 251
Target Start/End: Original strand, 1379690 - 1379917
Alignment:
Q  24 ggacttgagcaccacctatctgtaccaaacctaaaaacaacctttttggctttcaaccatgccaaagacataaatttaactttatctaacaacctaggaa 123  Q
    ||||||||||||||| | || | | ||||||||||||||||||| |||||||||||||| || ||||||||| |||||||||| ||||||| ||| ||||    
T  1379690 ggacttgagcaccacatctcagaatcaaacctaaaaacaaccttattggctttcaaccaagctaaagacatatatttaactttgtctaacagcctgggaa 1379789  T
Q  124 tagaagtaacaacattattgaagagtctgttattacgttcattccataaaatccaaacacacaaaagccaaatcagctgaaggaaatctcgaaccgcttt 223  Q
    ||||||| |||||||||||||| |  || |||||| |||| |||||||  | |||||| |||||||||||||| |||||||| || |||| |   |||||    
T  1379790 tagaagttacaacattattgaaaaacctattattatgttcgttccataccacccaaacgcacaaaagccaaataagctgaagaaagtctctagtagcttt 1379889  T
Q  224 cccaccacctaacaaatgcacaaactga 251  Q
    ||| ||||||  ||||| ||||||||||    
T  1379890 ccctccacctgtcaaattcacaaactga 1379917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 25 - 205
Target Start/End: Original strand, 11026709 - 11026889
Alignment:
Q  25 gacttgagcaccacctatctgtaccaaacctaaaaacaacctttttggctttcaaccatgccaaagacataaatttaactttatctaacaacctaggaat 124  Q
    ||||||| |||||||||| ||| |||||| ||||  || ||||||||| ||||| |||  | ||||||| | ||||||||||||||| |||| |||| ||    
T  11026709 gacttgaacaccacctatttgtgccaaacttaaaggcagcctttttggatttcatccagactaaagacaaatatttaactttatctatcaacttaggcat 11026808  T
Q  125 agaagtaacaacattattgaagagtctgttattacgttcattccataaaatccaaacacacaaaagccaaatcagctgaag 205  Q
    || ||| |||||||||||||| || || |||||  | ||||||||||| | ||| ||  |||| |||||||| ||||||||    
T  11026809 aggagttacaacattattgaaaagcctattattgtgatcattccataagacccacacgaacaatagccaaataagctgaag 11026889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 24313959 - 24313911
Alignment:
Q  20 gaaaggacttgagcaccacctatctgtaccaaacctaaaaacaaccttt 68  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  24313959 gaaaggacttgagcaccacctatctctaccaaacctaaaaacaaccttt 24313911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 196
Target Start/End: Original strand, 35487525 - 35487625
Alignment:
Q  96 aatttaactttatctaacaacctaggaatagaagtaacaacattattgaagagtctgttattacgttcattccataaaatccaaacacacaaaagccaaa 195  Q
    ||||| || ||||||||||| | |||||||| |||||||  ||||||||| |  | ||| ||| ||||||||| || || ||||  ||||||||||||||    
T  35487525 aatttgaccttatctaacaagcgaggaatagtagtaacagtattattgaacaagcggttgttatgttcattccgtataacccaagaacacaaaagccaaa 35487624  T
Q  196 t 196  Q
    |    
T  35487625 t 35487625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 122; Significance: 1e-62; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 24 - 233
Target Start/End: Original strand, 28060186 - 28060395
Alignment:
Q  24 ggacttgagcaccacctatctgtaccaaacctaaaaacaacctttttggctttcaaccatgccaaagacataaatttaactttatctaacaacctaggaa 123  Q
    |||||||| |||||||||| ||||| ||||||||||||||| |||||| |||||||||| || ||||||||| |||||||||||||||||||||| ||||    
T  28060186 ggacttgaacaccacctatatgtactaaacctaaaaacaacatttttgactttcaaccaggctaaagacatatatttaactttatctaacaacctgggaa 28060285  T
Q  124 tagaagtaacaacattattgaagagtctgttattacgttcattccataaaatccaaacacacaaaagccaaatcagctgaaggaaatctcgaaccgcttt 223  Q
    ||||||| |||| ||| ||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||| |||| ||||||| |||||   |||||    
T  28060286 tagaagttacaatattgttgaagagtctgttattacgttcgttccataaaattcaaacgcacaaaagccaaataagctaaaggaaagctcgagttgcttt 28060385  T
Q  224 cccaccacct 233  Q
     |||||||||    
T  28060386 accaccacct 28060395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 28 - 247
Target Start/End: Complemental strand, 7459199 - 7458980
Alignment:
Q  28 ttgagcaccacctatctgtaccaaacctaaaaacaacctttttggctttcaaccatgccaaagacataaatttaactttatctaacaacctaggaataga 127  Q
    ||||||||||||||||||||||||||||||||||| | ||||| ||||||||||| || ||||||| | |||||||||||||||||||||| ||||||||    
T  7459199 ttgagcaccacctatctgtaccaaacctaaaaacagctttttttgctttcaaccaggctaaagacaaatatttaactttatctaacaacctgggaataga 7459100  T
Q  128 agtaacaacattattgaagagtctgttattacgttcattccataaaatccaaacacacaaaagccaaatcagctgaaggaaatctcgaaccgctttccca 227  Q
    ||| |||||||| ||||| || |||||||| ||||| ||||||||||  || ||||||||||||||||| |||||||| || || ||| ||||||| |||    
T  7459099 agttacaacatttttgaaaagcctgttattgcgttcgttccataaaactcacacacacaaaagccaaataagctgaagaaagtcacgagccgctttacca 7459000  T
Q  228 ccacctaacaaatgcacaaa 247  Q
    |||||| |||||| ||||||    
T  7458999 ccacctgacaaatacacaaa 7458980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 24 - 251
Target Start/End: Original strand, 34231307 - 34231534
Alignment:
Q  24 ggacttgagcaccacctatctgtaccaaacctaaaaacaacctttttggctttcaaccatgccaaagacataaatttaactttatctaacaacctaggaa 123  Q
    |||||||| |||||| |||||| ||||||||||||||||||||| |||||||||||||| || ||||||||| |||||||||||||||||||||| ||||    
T  34231307 ggacttgaacaccacatatctgaaccaaacctaaaaacaaccttattggctttcaaccaggctaaagacatatatttaactttatctaacaacctgggaa 34231406  T
Q  124 tagaagtaacaacattattgaagagtctgttattacgttcattccataaaatccaaacacacaaaagccaaatcagctgaaggaaatctcgaaccgcttt 223  Q
    | ||||| |||||||||||||| || |||||||||||||| ||||||||||  ||||| ||||| |||||||| |||||||| ||||||| ||| |||||    
T  34231407 ttgaagttacaacattattgaaaagcctgttattacgttcgttccataaaactcaaacgcacaagagccaaataagctgaagaaaatctctaacagcttt 34231506  T
Q  224 cccaccacctaacaaatgcacaaactga 251  Q
     || ||||||  ||| | ||||||||||    
T  34231507 acctccacctgtcaagttcacaaactga 34231534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 24 - 208
Target Start/End: Original strand, 4076883 - 4077067
Alignment:
Q  24 ggacttgagcaccacctatctgtaccaaacctaaaaacaacctttttggctttcaaccatgccaaagacataaatttaactttatctaacaacctaggaa 123  Q
    |||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||| || ||||||||| |||||||||||| || |||||| ||||    
T  4076883 ggacttgaacaccacttatctgtaccaaacctaaaaacaacctttttagctttcaaccaggctaaagacatatatttaactttatttagcaacctgggaa 4076982  T
Q  124 tagaagtaacaacattattgaagagtctgttattacgttcattccataaaatccaaacacacaaaagccaaatcagctgaaggaa 208  Q
    ||||||| |||||||| || ||||| ||||||||||| ||||||||||||| |||||||||||| |||||||| |||||||||||    
T  4076983 tagaagttacaacatttttaaagagcctgttattacgctcattccataaaacccaaacacacaacagccaaataagctgaaggaa 4077067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 24 - 251
Target Start/End: Complemental strand, 29114081 - 29113854
Alignment:
Q  24 ggacttgagcaccacctatctgtaccaaacctaaaaacaacctttttggctttcaaccatgccaaagacataaatttaactttatctaacaacctaggaa 123  Q
    |||||||| |||||| |||||| |||||| |||||||||||||| |||||||||||||| || ||||||||| |||| ||||||||||||||||| ||||    
T  29114081 ggacttgaacaccacatatctgaaccaaaactaaaaacaaccttcttggctttcaaccaggctaaagacatatatttgactttatctaacaacctgggaa 29113982  T
Q  124 tagaagtaacaacattattgaagagtctgttattacgttcattccataaaatccaaacacacaaaagccaaatcagctgaaggaaatctcgaaccgcttt 223  Q
    | ||||| |||||||||||||| || |||||||||||||| |||||||||| |||||||||||| |||||||| |||||||| ||||||| | | |||||    
T  29113981 ttgaagttacaacattattgaaaagcctgttattacgttcgttccataaaacccaaacacacaagagccaaataagctgaagaaaatctctagcagcttt 29113882  T
Q  224 cccaccacctaacaaatgcacaaactga 251  Q
     || ||||||  ||| | ||||||||||    
T  29113881 acctccacctgtcaagttcacaaactga 29113854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 33 - 145
Target Start/End: Complemental strand, 10282343 - 10282231
Alignment:
Q  33 caccacctatctgtaccaaacctaaaaacaacctttttggctttcaaccatgccaaagacataaatttaactttatctaacaacctaggaatagaagtaa 132  Q
    |||||||||||||| |||||||||||  || ||||||||||||||| ||| || ||||||||| |||| ||||||||||||||||| | |||||  || |    
T  10282343 caccacctatctgtgccaaacctaaaggcagcctttttggctttcatccaggctaaagacatatatttcactttatctaacaacctggaaataggggtta 10282244  T
Q  133 caacattattgaa 145  Q
    |||||||||||||    
T  10282243 caacattattgaa 10282231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 205
Target Start/End: Complemental strand, 27942029 - 27941845
Alignment:
Q  21 aaaggacttgagcaccacctatctgtaccaaacctaaaaacaacctttttggctttcaaccatgccaaagacataaatttaactttatctaacaacctag 120  Q
    ||||| ||||| ||||||||||| |||||||||  ||| | | | ||||| ||||||||||| || |||||||   |||| ||||| || ||||||||||    
T  27942029 aaagggcttgaccaccacctatcagtaccaaacgaaaatatagcttttttagctttcaaccaagctaaagacaagtattttactttgtccaacaacctag 27941930  T
Q  121 gaatagaagtaacaacattattgaagagtctgttattacgttcattccataaaatccaaacacacaaaagccaaatcagctgaag 205  Q
    | |||| ||||| |  ||||||||| || || |||||||||||| ||||||| | |||| |||| | ||||||||| ||||||||    
T  27941929 gcataggagtaatagaattattgaacagcctattattacgttcagtccataatacccaagcacaaagaagccaaatgagctgaag 27941845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 67
Target Start/End: Original strand, 46177859 - 46177906
Alignment:
Q  20 gaaaggacttgagcaccacctatctgtaccaaacctaaaaacaacctt 67  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  46177859 gaaaggacttgagcaccacctatctgtaccaaacctaaaaacaacctt 46177906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 96 - 196
Target Start/End: Original strand, 34344482 - 34344582
Alignment:
Q  96 aatttaactttatctaacaacctaggaatagaagtaacaacattattgaagagtctgttattacgttcattccataaaatccaaacacacaaaagccaaa 195  Q
    ||||| || ||||||||||| | ||||||||||||||||  ||||||||| |  | |||||||||||||||||||| || ||||  |||||||||| |||    
T  34344482 aatttgaccttatctaacaagcgaggaatagaagtaacagtattattgaacaagcggttattacgttcattccatataacccaagaacacaaaagcgaaa 34344581  T
Q  196 t 196  Q
    |    
T  34344582 t 34344582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 56 - 202
Target Start/End: Original strand, 8771074 - 8771220
Alignment:
Q  56 aaaaacaacctttttggctttcaaccatgccaaagacataaatttaactttatctaacaacctaggaatagaagtaacaacattattgaagagtctgtta 155  Q
    ||||||||||||||| ||||||| |||  ||||||| |  ||||||||||||||||||||   ||| | |  | ||| |  ||||||||| || | |||     
T  8771074 aaaaacaacctttttagctttcagccaccccaaagataacaatttaactttatctaacaattgagggacaatattaatagaattattgaaaagacggttg 8771173  T
Q  156 ttacgttcattccataaaatccaaacacacaaaagccaaatcagctg 202  Q
    |||||||||||||| |||| |||| ||||||| |||||||| |||||    
T  8771174 ttacgttcattccacaaaacccaagcacacaacagccaaataagctg 8771220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 105 - 196
Target Start/End: Original strand, 6909740 - 6909831
Alignment:
Q  105 ttatctaacaacctaggaatagaagtaacaacattattgaagagtctgttattacgttcattccataaaatccaaacacacaaaagccaaat 196  Q
    ||||||||||| |  |||||||||||||||  ||||||||| |  | |||||| ||||||||||||| || ||||  |||||||||||||||    
T  6909740 ttatctaacaagcgtggaatagaagtaacattattattgaacaaacggttatttcgttcattccatataacccaagaacacaaaagccaaat 6909831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 18654364 - 18654319
Alignment:
Q  24 ggacttgagcaccacctatctgtaccaaacctaaaaacaacctttt 69  Q
    ||||||||||||||| ||| ||||||||||||||||||||| ||||    
T  18654364 ggacttgagcaccacatatatgtaccaaacctaaaaacaacatttt 18654319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 142
Target Start/End: Complemental strand, 39060270 - 39060156
Alignment:
Q  28 ttgagcaccacctatctgtaccaaacctaaaaacaacctttttggctttcaaccatgccaaagacataaatttaactttatctaacaacctaggaataga 127  Q
    |||| ||||||||||| |||||||||  ||| | ||| ||||| | ||||||||| || |||||||   |||| ||||| || ||||||||||| ||||     
T  39060270 ttgaccaccacctatcagtaccaaacgaaaataaaacttttttagttttcaaccaagctaaagacaagtattttactttgtccaacaacctaggcatagg 39060171  T
Q  128 agtaacaacattatt 142  Q
    ||||| || ||||||    
T  39060170 agtaataaaattatt 39060156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0308 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 24 - 204
Target Start/End: Original strand, 11686 - 11866
Alignment:
Q  24 ggacttgagcaccacctatctgtaccaaacctaaaaacaacctttttggctttcaaccatgccaaagacataaatttaactttatctaacaacctaggaa 123  Q
    |||||||||||||||||||||| |||||||||||||||||| ||||| | ||||||||| || ||||||||| ||||||||||||||||||||||  |||    
T  11686 ggacttgagcaccacctatctgaaccaaacctaaaaacaacattttttgttttcaaccaggctaaagacatatatttaactttatctaacaacctgagaa 11785  T
Q  124 tagaagtaacaacattattgaagagtctgttattacgttcattccataaaatccaaacacacaaaagccaaatcagctgaa 204  Q
    || |||| |||||||||||||| ||  ||||||||||||| |||||||||| |||||| ||||| ||| |||| |||||||    
T  11786 taaaagttacaacattattgaaaagcatgttattacgttcgttccataaaacccaaacgcacaagagctaaataagctgaa 11866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 24 - 205
Target Start/End: Original strand, 181737 - 181918
Alignment:
Q  24 ggacttgagcaccacctatctgtaccaaacctaaaaacaacctttttggctttcaaccatgccaaagacataaatttaactttatctaacaacctaggaa 123  Q
    |||||||| |||||||||| || |||||||||||| || |||||||| ||||||||||| || ||||||||| |||||||||||||||||||||| ||||    
T  181737 ggacttgaacaccacctatttgaaccaaacctaaagaccaccttttttgctttcaaccaggctaaagacatatatttaactttatctaacaacctgggaa 181836  T
Q  124 tagaagtaacaacattattgaagagtctgttattacgttcattccataaaatccaaacacacaaaagccaaatcagctgaag 205  Q
    ||||||| |||||||||||||| |  |||||||||||||| |||||||||| |||||| || |  |||||||| ||||||||    
T  181837 tagaagttacaacattattgaaaaccctgttattacgttcgttccataaaacccaaacgcatacgagccaaataagctgaag 181918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 202
Target Start/End: Complemental strand, 72122 - 72057
Alignment:
Q  137 attattgaagagtctgttattacgttcattccataaaatccaaacacacaaaagccaaatcagctg 202  Q
    ||||||||| |||| ||| |||||||||||||| || | ||||  ||||||||||||||| |||||    
T  72122 attattgaatagtcggttgttacgttcattccacaatacccaagaacacaaaagccaaataagctg 72057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 5162 times since January 2019
Visitors: 4845