View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0740_high_13 (Length: 478)
Name: NF0740_high_13
Description: NF0740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0740_high_13 |
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| [»] chr4 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 435; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 8 - 478
Target Start/End: Complemental strand, 33388809 - 33388339
Alignment:
| Q |
8 |
cgaataatatcaaacaaagttgcaaatttaggggagaaggtgggccctgtgaaagtgttatcactgtattccacccttcccccagctatgcagcagaaga |
107 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
33388809 |
cgaaaaatatcaaacaaagttgcaaatttaggggagaaggtgggccctgtgaaagtgttatcactgtattctacccttcccccagctatgcagcagaaga |
33388710 |
T |
|
| Q |
108 |
tttttgagccagctccgcctccagttaaggagggaggcctccctggaagaaagattgtggtatcaacaaacatagcagaaacttctttgactattgatgg |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33388709 |
tttttgagccagctccgcctccagttaaggagggaggcctccctggaagaaagattgtggtatcaacaaacatagcagaaacttctttgactattgatgg |
33388610 |
T |
|
| Q |
208 |
tatagtatatgttattgaccctggatttgccaagcagaaggtttattatccccgaactcgtgttgagtctttgttggtgtctccaatatcaaaggctagt |
307 |
Q |
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| T |
33388609 |
tatagtatatgttattgaccctggatttgccaagcagaaggtttataatccccgaactcgtgttgagtctttgttggtgtctccaatatcaaaggctagt |
33388510 |
T |
|
| Q |
308 |
gcacaccagagatcaggtcgtgccggaagaactcaaccggggaaatgctatagactctataccaaaataagtttcagtaatgatcttcagccgcagacct |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
33388509 |
gcacaccagagatcaggtcgtgccggaagaactcaaccggggaaatgctatagactctataccgaaataagtttcagtaatgatcttcagccgcagacct |
33388410 |
T |
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| Q |
408 |
atcctggaattttgagatctaatcttgcaaacactgttcttaaattgaagaaattgggcatagctgattta |
478 |
Q |
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| T |
33388409 |
atcctgaaattttgagatctaatcttgcaaacacggttcttacattgaagaaattgggtatagatgattta |
33388339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 24 - 478
Target Start/End: Complemental strand, 38779834 - 38779380
Alignment:
| Q |
24 |
aagttgcaaatttaggggagaaggtgggccctgtgaaagtgttatcactgtattccacccttcccccagctatgcagcagaagatttttgagccagctcc |
123 |
Q |
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|||||||||| | ||||| |||||||||||||||||| | || | ||||| || ||||||||||||||||| ||||||||||||||||||||||| |
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| T |
38779834 |
aagttgcaaacatgggggaccaggtgggccctgtgaaagccgtgccattatattctactcttcccccagctatgcaacagaagatttttgagccagctcc |
38779735 |
T |
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| Q |
124 |
gcctccagttaaggagggaggcctccctggaagaaagattgtggtatcaacaaacatagcagaaacttctttgactattgatggtatagtatatgttatt |
223 |
Q |
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| T |
38779734 |
acctccagttaaggagggaggcccccctggaaggaagattgtggtatcaacaaacatagcagaaacttccttgacaattgatggtatagtctatgttatt |
38779635 |
T |
|
| Q |
224 |
gaccctggatttgccaagcagaaggtttattatccccgaactcgtgttgagtctttgttggtgtctccaatatcaaaggctagtgcacaccagagatcag |
323 |
Q |
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| T |
38779634 |
gatcctggatttgctaagcagaaggtctataaccctcgagttcgtgttgagtctttgttggtgtctccaatatcaaaagctagtgcacaccagaggtctg |
38779535 |
T |
|
| Q |
324 |
gtcgtgccggaagaactcaaccggggaaatgctatagactctataccaaaataagtttcagtaatgatcttcagccgcagacctatcctggaattttgag |
423 |
Q |
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| T |
38779534 |
gacgtgctggaagaactcagccggggaaatgctttagactttataccgaaagaagtttcaataatgatcttcagccgcagacctatcctgaaattttgag |
38779435 |
T |
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| Q |
424 |
atctaatcttgcaaacactgttcttaaattgaagaaattgggcatagctgattta |
478 |
Q |
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|||||||||||| ||||| ||||||| |||||||||| |||| |||| ||||||| |
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| T |
38779434 |
atctaatcttgccaacacagttcttacattgaagaaactgggtatagatgattta |
38779380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 46 - 470
Target Start/End: Original strand, 20816333 - 20816757
Alignment:
| Q |
46 |
ggtgggccctgtgaaagtgttatcactgtattccacccttcccccagctatgcagcagaagatttttgagccagctccgcctccagttaaggagggaggc |
145 |
Q |
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|||||||||||||||||| || | ||||||| || |||||||| |||||||| || | |||||||||||||||||| |||||||||| ||||||||| |
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| T |
20816333 |
ggtgggccctgtgaaagttgtaccgttgtattctactcttcccccggctatgcaacacaggatttttgagccagctccacctccagttagagagggaggc |
20816432 |
T |
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| Q |
146 |
ctccctggaagaaagattgtggtatcaacaaacatagcagaaacttctttgactattgatggtatagtatatgttattgaccctggatttgccaagcaga |
245 |
Q |
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|| |||||||| |||||| |||||||||||||||||||||||||||| ||||| || |||||||||| |||||| ||||||||||||| || ||||||| |
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| T |
20816433 |
cttcctggaaggaagattttggtatcaacaaacatagcagaaacttcattgaccatcaatggtatagtctatgttgttgaccctggattggctaagcaga |
20816532 |
T |
|
| Q |
246 |
aggtttattatccccgaactcgtgttgagtctttgttggtgtctccaatatcaaaggctagtgcacaccagagatcaggtcgtgccggaagaactcaacc |
345 |
Q |
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|||||||| | || ||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||||| || ||||| |||||||| ||||| |
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| T |
20816533 |
aggtttataaccctcgagctcgtgttgagtctttattggtgtctccaatatcaaaggctagtgcggttcagagatctgggcgtgctggaagaacacaacc |
20816632 |
T |
|
| Q |
346 |
ggggaaatgctatagactctataccaaaataagtttcagtaatgatcttcagccgcagacctatcctggaattttgagatctaatcttgcaaacactgtt |
445 |
Q |
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|||||||||| |||||| ||||| ||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| || ||||| ||| |
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| T |
20816633 |
agggaaatgctttagactttatacggaaagaagtttcaataatgatcttcagccgcagacctatcctgaaattttgagatctaatctcgccaacacagtt |
20816732 |
T |
|
| Q |
446 |
cttaaattgaagaaattgggcatag |
470 |
Q |
| |
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|||| |||||||||||||| |||| |
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| T |
20816733 |
cttactttgaagaaattgggtatag |
20816757 |
T |
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