View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0740_high_17 (Length: 470)

Name: NF0740_high_17
Description: NF0740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0740_high_17
NF0740_high_17
[»] chr2 (15 HSPs)
chr2 (53-242)||(28524220-28524409)
chr2 (251-459)||(28524451-28524659)
chr2 (251-344)||(34784923-34785016)
chr2 (253-345)||(44860347-44860439)
chr2 (254-317)||(35056896-35056959)
chr2 (251-332)||(2331819-2331898)
chr2 (251-345)||(37419768-37419862)
chr2 (254-337)||(4882644-4882727)
chr2 (251-329)||(36096331-36096409)
chr2 (252-345)||(11223804-11223896)
chr2 (251-348)||(15657889-15657986)
chr2 (252-317)||(36756312-36756377)
chr2 (285-329)||(20242694-20242738)
chr2 (254-302)||(24975308-24975356)
chr2 (285-337)||(38117118-38117170)
[»] scaffold0003 (1 HSPs)
scaffold0003 (251-345)||(241619-241713)
[»] chr3 (11 HSPs)
chr3 (254-343)||(17005561-17005650)
chr3 (251-344)||(28812540-28812633)
chr3 (251-345)||(11665969-11666063)
chr3 (251-345)||(41961590-41961684)
chr3 (252-301)||(16192734-16192783)
chr3 (254-345)||(14216920-14217011)
chr3 (254-345)||(14223049-14223140)
chr3 (251-345)||(4987231-4987325)
chr3 (254-300)||(8039820-8039866)
chr3 (251-301)||(28678328-28678378)
chr3 (252-332)||(9800066-9800146)
[»] chr4 (9 HSPs)
chr4 (251-343)||(22234832-22234924)
chr4 (251-332)||(30982831-30982912)
chr4 (255-327)||(44132602-44132674)
chr4 (251-345)||(24613641-24613735)
chr4 (251-332)||(47264011-47264092)
chr4 (251-325)||(5414132-5414206)
chr4 (251-348)||(46083928-46084025)
chr4 (252-332)||(5225566-5225646)
chr4 (261-301)||(40742626-40742666)
[»] scaffold0036 (1 HSPs)
scaffold0036 (255-345)||(9687-9777)
[»] chr8 (13 HSPs)
chr8 (251-345)||(15816069-15816163)
chr8 (251-301)||(11927070-11927120)
chr8 (250-332)||(12570462-12570543)
chr8 (251-345)||(29447050-29447144)
chr8 (251-329)||(26902131-26902209)
chr8 (281-347)||(41831884-41831950)
chr8 (251-345)||(11803284-11803378)
chr8 (251-301)||(11944690-11944740)
chr8 (251-301)||(29447469-29447519)
chr8 (290-351)||(14134752-14134813)
chr8 (251-295)||(24362192-24362236)
chr8 (251-295)||(25566866-25566910)
chr8 (253-301)||(28384978-28385026)
[»] chr5 (13 HSPs)
chr5 (274-344)||(30183597-30183667)
chr5 (252-345)||(18592099-18592192)
chr5 (285-348)||(42893408-42893471)
chr5 (251-345)||(3966528-3966622)
chr5 (251-329)||(21814286-21814364)
chr5 (252-328)||(21542056-21542132)
chr5 (252-344)||(36642704-36642795)
chr5 (288-343)||(27932286-27932341)
chr5 (251-317)||(6401523-6401589)
chr5 (290-343)||(26312822-26312875)
chr5 (251-288)||(41091254-41091291)
chr5 (252-332)||(21522776-21522856)
chr5 (252-332)||(21533342-21533422)
[»] chr1 (12 HSPs)
chr1 (251-345)||(9828069-9828163)
chr1 (251-332)||(16164268-16164349)
chr1 (251-345)||(47989522-47989616)
chr1 (252-332)||(6612124-6612204)
chr1 (251-295)||(34371738-34371782)
chr1 (251-301)||(44482255-44482305)
chr1 (251-343)||(5944308-5944400)
chr1 (285-348)||(40258881-40258944)
chr1 (251-301)||(25361911-25361961)
chr1 (251-317)||(25934641-25934707)
chr1 (251-332)||(6427489-6427570)
chr1 (285-345)||(32461404-32461464)
[»] chr7 (9 HSPs)
chr7 (255-332)||(6630865-6630942)
chr7 (251-348)||(27229248-27229345)
chr7 (251-342)||(24339667-24339758)
chr7 (250-311)||(26329356-26329417)
chr7 (285-345)||(598256-598316)
chr7 (251-345)||(7438731-7438825)
chr7 (251-288)||(22602707-22602744)
chr7 (285-345)||(21880200-21880260)
chr7 (251-351)||(26033395-26033495)
[»] chr6 (13 HSPs)
chr6 (251-332)||(16766722-16766803)
chr6 (251-329)||(18367861-18367939)
chr6 (251-345)||(17327601-17327689)
chr6 (251-329)||(16488546-16488624)
chr6 (251-295)||(26562714-26562758)
chr6 (257-301)||(34384959-34385003)
chr6 (251-337)||(8365467-8365553)
chr6 (252-298)||(8931589-8931635)
chr6 (255-301)||(28862151-28862197)
chr6 (251-288)||(9025491-9025528)
chr6 (252-301)||(9195738-9195787)
chr6 (251-348)||(9629408-9629505)
chr6 (253-301)||(10294134-10294182)
[»] scaffold0008 (1 HSPs)
scaffold0008 (251-345)||(263312-263406)
[»] scaffold0123 (1 HSPs)
scaffold0123 (251-317)||(44493-44559)
[»] scaffold0623 (1 HSPs)
scaffold0623 (251-329)||(5952-6030)
[»] scaffold0450 (1 HSPs)
scaffold0450 (275-345)||(8575-8645)
[»] scaffold0136 (1 HSPs)
scaffold0136 (251-345)||(3789-3883)
[»] scaffold0044 (1 HSPs)
scaffold0044 (251-345)||(53205-53299)
[»] scaffold0122 (1 HSPs)
scaffold0122 (251-348)||(8691-8788)
[»] scaffold0019 (1 HSPs)
scaffold0019 (251-344)||(71750-71843)
[»] scaffold0316 (1 HSPs)
scaffold0316 (272-308)||(16180-16216)
[»] scaffold0171 (1 HSPs)
scaffold0171 (251-343)||(23536-23628)


Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-100; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 53 - 242
Target Start/End: Original strand, 28524220 - 28524409
Alignment:
Q  53 ggaacaataaaagtagatgatagcgtttagacaaaggattgaatacccaacttgaataggtaatagtaaactgatcatgtagataaaaagcatgacaaat 152  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28524220 ggaacaataaaagtagatgatagcgtttagacaaaggattgaatacccaacttgaataggtaatagtaaactgatcatgtagataaaaagcatgacaaat 28524319  T
Q  153 ctaagagcaatggatctcacatgtttcatagagatacaaaagaaagtgtactatggaagagaataatatattatctatgaagcacggata 242  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  28524320 ctaagagcaatggatctcacatgtttcatagagatacaaaagaatgtgtactatggaagagaataatatattatctatgaagcacggata 28524409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 251 - 459
Target Start/End: Original strand, 28524451 - 28524659
Alignment:
Q  251 cacataattcagtgtaactatatgtgtcgttgtcgtgttggtgtcagacacaatacgtgtctgacacaaggacacgcctaattcgagaagtgtccatgtt 350  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||| ||||||| ||||||||||||||   |||||||||||  ||||||||||||||||    
T  28524451 cacataattcagtgtaattatatgtgtcgttgttgtgttggtgtcggacacaacacgtgtctgacacagaaacacgcctaatctgagaagtgtccatgtt 28524550  T
Q  351 ttgtagtatattattgaattaataataattaaatgttgattggaaaacaaagaaaaaaggtatagccgtagtgatcttatatatgcctcaaaatcagcta 450  Q
    | |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28524551 tcgtagtatattattgaaataataataattaaatgttgattggaaaacaaagaaaaaaggtatagccgtagtgatcttatatatgcctcaaaatcagcta 28524650  T
Q  451 tagattcat 459  Q
    |||||||||    
T  28524651 tagattcat 28524659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 251 - 344
Target Start/End: Complemental strand, 34785016 - 34784923
Alignment:
Q  251 cacataattcagtgtaactatatgtgtcgttgtcgtgttggtgtcagacacaatacgtgtctgacacaaggacacgcctaattcgagaagtgtc 344  Q
    ||||||||| ||||||| ||||||||||| |||||||| ||| || ||||| | || ||||||||||  |||||||||| ||||||| ||||||    
T  34785016 cacataatttagtgtaattatatgtgtcggtgtcgtgtcggtatcggacacgacacctgtctgacacggggacacgccttattcgaggagtgtc 34784923  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 253 - 345
Target Start/End: Original strand, 44860347 - 44860439
Alignment:
Q  253 cataattcagtgtaactatatgtgtcgttgtcgtgttggtgtcagacacaatacgtgtctgacacaaggacacgcctaattcgagaagtgtcc 345  Q
    ||||||||||||||| ||||||||||| ||||||||||||||  ||||| | | ||||| ||||   |||||| ||||||||||| |||||||    
T  44860347 cataattcagtgtaattatatgtgtcggtgtcgtgttggtgttggacacgacatgtgtccgacatcgggacacacctaattcgaggagtgtcc 44860439  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 254 - 317
Target Start/End: Original strand, 35056896 - 35056959
Alignment:
Q  254 ataattcagtgtaactatatgtgtcgttgtcgtgttggtgtcagacacaatacgtgtctgacac 317  Q
    |||||||||||||| ||||||||||| |||||||| |||||| ||||| | ||||||| |||||    
T  35056896 ataattcagtgtaattatatgtgtcggtgtcgtgtcggtgtcggacacgacacgtgtccgacac 35056959  T

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Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 251 - 332
Target Start/End: Original strand, 2331819 - 2331898
Alignment:
Q  251 cacataattcagtgtaactatatgtgtcgttgtcgtgttggtgtcagacacaatacgtgtctgacacaaggacacgcctaat 332  Q
    ||||||||||||||||  | ||||||||| ||||||||  ||||| | ||||  ||||||||||||| ||||||||||||||    
T  2331819 cacataattcagtgta--tttatgtgtcggtgtcgtgtcagtgtcgggcacagcacgtgtctgacaccaggacacgcctaat 2331898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 251 - 345
Target Start/End: Original strand, 37419768 - 37419862
Alignment:
Q  251 cacataattcagtgtaactatatgtgtcgttgtcgtgttggtgtcagacacaatacgtgtctgacacaaggacacgcctaattcgagaagtgtcc 345  Q
    |||| |||||||||||| || | ||| || |||||||| |||||| ||||| || |||||| |||||  ||||||||||||| |||| |||||||    
T  37419768 cacaaaattcagtgtaattacaagtgccggtgtcgtgtcggtgtcggacacgatgcgtgtccgacaccgggacacgcctaatccgaggagtgtcc 37419862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 254 - 337
Target Start/End: Complemental strand, 4882727 - 4882644
Alignment:
Q  254 ataattcagtgtaactatatgtgtcgttgtcgtgttggtgtcagacacaatacgtgtctgacacaaggacacgcctaattcgag 337  Q
    |||||||||||||| || | |||||| |||||||| |||||||||||| |||| |||| | |||  | |||| |||||||||||    
T  4882727 ataattcagtgtaattacaagtgtcgatgtcgtgtcggtgtcagacacgatacatgtcgggcacctgaacacacctaattcgag 4882644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 251 - 329
Target Start/End: Complemental strand, 36096409 - 36096331
Alignment:
Q  251 cacataattcagtgtaactatatgtgtcgttgtcgtgttggtgtcagacacaatacgtgtctgacacaaggacacgcct 329  Q
    |||| ||| |||||||| ||||| ||||| |||||||| | |||| ||||| | |||||||||||||  ||||||||||    
T  36096409 cacaaaatgcagtgtaattatatttgtcggtgtcgtgtcgatgtcggacacgacacgtgtctgacacggggacacgcct 36096331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 252 - 345
Target Start/End: Complemental strand, 11223896 - 11223804
Alignment:
Q  252 acataattcagtgtaactatatgtgtcgttgtcgtgttggtgtcagacacaatacgtgtctgacacaaggacacgcctaattcgagaagtgtcc 345  Q
    |||||||||||||||| || | |||||| |||| ||| |||||| ||||| | || ||||||||||  |||||||||||||  ||| |||||||    
T  11223896 acataattcagtgtaattacaagtgtcggtgtcatgtaggtgtcggacacgacac-tgtctgacaccgggacacgcctaatctgaggagtgtcc 11223804  T

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Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 348
Target Start/End: Original strand, 15657889 - 15657986
Alignment:
Q  251 cacataattcagtgtaactatatgtgtcgttgtcgtgttggtgtcagacacaatacgtgtctgacacaaggacacgcctaattcgagaagtgtccatg 348  Q
    ||||||||||||||||| || |  ||||| |||||||||| |||| ||| | | ||||||| ||| |  ||||||||||| | |||| ||||||||||    
T  15657889 cacataattcagtgtaattacaaatgtcggtgtcgtgttgatgtcggacgcgacacgtgtccgacgccgggacacgcctagtccgaggagtgtccatg 15657986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 252 - 317
Target Start/End: Complemental strand, 36756377 - 36756312
Alignment:
Q  252 acataattcagtgtaactatatgtgtcgttgtcgtgttggtgtcagacacaatacgtgtctgacac 317  Q
    |||||||||||||||| |||| |||||| ||||||||| |||||  |||||| || |||| |||||    
T  36756377 acataattcagtgtaattataagtgtcggtgtcgtgttagtgtcgaacacaacacatgtccgacac 36756312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 285 - 329
Target Start/End: Complemental strand, 20242738 - 20242694
Alignment:
Q  285 gtgttggtgtcagacacaatacgtgtctgacacaaggacacgcct 329  Q
    |||| |||||| ||||||| ||||||||||||| |||||||||||    
T  20242738 gtgtcggtgtcggacacaacacgtgtctgacacgaggacacgcct 20242694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 254 - 302
Target Start/End: Complemental strand, 24975356 - 24975308
Alignment:
Q  254 ataattcagtgtaactatatgtgtcgttgtcgtgttggtgtcagacaca 302  Q
    |||||||||||||| |||||| |||| ||||||||  ||||||||||||    
T  24975356 ataattcagtgtaaatatatgcgtcggtgtcgtgtccgtgtcagacaca 24975308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 285 - 337
Target Start/End: Complemental strand, 38117170 - 38117118
Alignment:
Q  285 gtgttggtgtcagacacaatacgtgtctgacacaaggacacgcctaattcgag 337  Q
    ||||||||||| ||||||| ||||||| |||||  ||||||||||||| ||||    
T  38117170 gtgttggtgtcggacacaacacgtgtccgacaccgggacacgcctaatccgag 38117118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 251 - 345
Target Start/End: Original strand, 241619 - 241713
Alignment:
Q  251 cacataattcagtgtaactatatgtgtcgttgtcgtgttggtgtcagacacaatacgtgtctgacacaaggacacgcctaattcgagaagtgtcc 345  Q
    ||||||||| ||||||| |||  |||||| ||||||||||||||| ||||| | ||||||| |||||  ||||||||||||| ||||||||||||    
T  241619 cacataatttagtgtaattatgagtgtcggtgtcgtgttggtgtcggacacgacacgtgtccgacaccgggacacgcctaatccgagaagtgtcc 241713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 254 - 343
Target Start/End: Complemental strand, 17005650 - 17005561
Alignment:
Q  254 ataattcagtgtaactatatgtgtcgttgtcgtgttggtgtcagacacaatacgtgtctgacacaaggacacgcctaattcgagaagtgt 343  Q
    |||||||||||||| |||| |||||| ||| |||||||||||||||| || ||||||||||||| |||||||  ||||| |||| |||||    
T  17005650 ataattcagtgtaattataagtgtcggtgttgtgttggtgtcagacataacacgtgtctgacaccaggacacctctaatccgaggagtgt 17005561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 251 - 344
Target Start/End: Original strand, 28812540 - 28812633
Alignment:
Q  251 cacataattcagtgtaactatatgtgtcgttgtcgtgttggtgtcagacacaatacgtgtctgacacaaggacacgcctaattcgagaagtgtc 344  Q
    ||||||||||||||||  || | |||||| ||||||||||||||||||||| |||| |||| ||||  |||||||||||||| |||| ||||||    
T  28812540 cacataattcagtgtagttacaagtgtcggtgtcgtgttggtgtcagacacgatacatgtccgacagcaggacacgcctaatccgaggagtgtc 28812633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 251 - 345
Target Start/End: Original strand, 11665969 - 11666063
Alignment:
Q  251 cacataattcagtgtaactatatgtgtcgttgtcgtgttggtgtcagacacaatacgtgtctgacacaaggacacgcctaattcgagaagtgtcc 345  Q
    |||| |||| ||||||| ||||||||||| |||||||||| ||| |||||| | |||||||||| |   | ||||||||||||| || |||||||    
T  11665969 cacacaatttagtgtaattatatgtgtcggtgtcgtgttgatgttagacacgacacgtgtctgatatcggaacacgcctaattcaaggagtgtcc 11666063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 251 - 345
Target Start/End: Complemental strand, 41961684 - 41961590
Alignment:
Q  251 cacataattcagtgtaactatatgtgtcgttgtcgtgttggtgtcagacacaatacgtgtctgacacaaggacacgcctaattcgagaagtgtcc 345  Q
    ||||| |||| |||||| || | |||||| |||||||| ||| || ||||| | ||||||| |||||  ||||||||||||| ||||||||||||    
T  41961684 cacattattcggtgtaattacaagtgtcggtgtcgtgtcggtatcggacacgacacgtgtccgacactgggacacgcctaatccgagaagtgtcc 41961590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 252 - 301
Target Start/End: Complemental strand, 16192783 - 16192734
Alignment:
Q  252 acataattcagtgtaactatatgtgtcgttgtcgtgttggtgtcagacac 301  Q
    |||||||||||||||| ||||||||| | |||||||| ||||||||||||    
T  16192783 acataattcagtgtaattatatgtgttgatgtcgtgtcggtgtcagacac 16192734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 254 - 345
Target Start/End: Original strand, 14216920 - 14217011
Alignment:
Q  254 ataattcagtgtaactatatgtgtcgttgtcgtgttggtgtcagacacaatacgtgtctgacacaaggacacgcctaattcgagaagtgtcc 345  Q
    |||||||||||||| || | |||||  ||||||||| ||||| ||||| | ||||||  |||||  |||||| |||||| ||||||||||||    
T  14216920 ataattcagtgtaattacaagtgtccgtgtcgtgttagtgtcggacacgacacgtgtacgacactgggacacacctaatccgagaagtgtcc 14217011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 254 - 345
Target Start/End: Original strand, 14223049 - 14223140
Alignment:
Q  254 ataattcagtgtaactatatgtgtcgttgtcgtgttggtgtcagacacaatacgtgtctgacacaaggacacgcctaattcgagaagtgtcc 345  Q
    |||||||||||||| || | |||||  ||||||||| ||||| ||||| | ||||||  |||||  |||||| |||||| ||||||||||||    
T  14223049 ataattcagtgtaattacaagtgtccgtgtcgtgttagtgtcggacacgacacgtgtacgacactgggacacacctaatccgagaagtgtcc 14223140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 251 - 345
Target Start/End: Complemental strand, 4987325 - 4987231
Alignment:
Q  251 cacataattcagtgtaactatatgtgtcgttgtcgtgttggtgtcagacacaatacgtgtctgacacaaggacacgcctaattcgagaagtgtcc 345  Q
    ||||||||||||||||| || | |||| | || ||||| |||||  ||||| | ||||||| |||||  ||||||||||||| |||| |||||||    
T  4987325 cacataattcagtgtaattacaagtgttggtgacgtgtcggtgttggacacgacacgtgtccgacaccgggacacgcctaatccgaggagtgtcc 4987231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 300
Target Start/End: Complemental strand, 8039866 - 8039820
Alignment:
Q  254 ataattcagtgtaactatatgtgtcgttgtcgtgttggtgtcagaca 300  Q
    |||||||||||||| ||||||||||| |||||||| |||||| ||||    
T  8039866 ataattcagtgtaattatatgtgtcggtgtcgtgtcggtgtcggaca 8039820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 251 - 301
Target Start/End: Original strand, 28678328 - 28678378
Alignment:
Q  251 cacataattcagtgtaactatatgtgtcgttgtcgtgttggtgtcagacac 301  Q
    ||||||||| ||| ||| | ||||||||| |||||||||||||||||||||    
T  28678328 cacataatttagtataattgtatgtgtcggtgtcgtgttggtgtcagacac 28678378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 252 - 332
Target Start/End: Original strand, 9800066 - 9800146
Alignment:
Q  252 acataattcagtgtaactatatgtgtcgttgtcgtgttggtgtcagacacaatacgtgtctgacacaaggacacgcctaat 332  Q
    ||||||||| |||||| | || |||||| |||||||| ||| ||||| |  ||||||||| |||||  |||||||||||||    
T  9800066 acataattccgtgtaattgtaagtgtcggtgtcgtgtcggtatcagagatgatacgtgtcggacacctggacacgcctaat 9800146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 251 - 343
Target Start/End: Complemental strand, 22234924 - 22234832
Alignment:
Q  251 cacataattcagtgtaactatatgtgtcgttgtcgtgttggtgtcagacacaatacgtgtctgacacaaggacacgcctaattcgagaagtgt 343  Q
    ||||||||||||||||| | ||||||||| |||||||| |||||| ||||| | ||||||| ||||| |||||||  ||||| ||||||||||    
T  22234924 cacataattcagtgtaattctatgtgtcggtgtcgtgtcggtgtctgacacgacacgtgtccgacaccaggacacagctaatccgagaagtgt 22234832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 251 - 332
Target Start/End: Complemental strand, 30982912 - 30982831
Alignment:
Q  251 cacataattcagtgtaactatatgtgtcgttgtcgtgttggtgtcagacacaatacgtgtctgacacaaggacacgcctaat 332  Q
    |||||| |||||||||| |||| |||||| |||||||| |||||||||||| | ||||||| |||||  |||||||||||||    
T  30982912 cacatatttcagtgtaattataagtgtcggtgtcgtgtcggtgtcagacacgacacgtgtccgacaccgggacacgcctaat 30982831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 255 - 327
Target Start/End: Complemental strand, 44132674 - 44132602
Alignment:
Q  255 taattcagtgtaactatatgtgtcgttgtcgtgttggtgtcagacacaatacgtgtctgacacaaggacacgc 327  Q
    ||||||||| ||| ||||||||||| |||||||||||||||  |||||| | |||||||||||| ||||||||    
T  44132674 taattcagtataattatatgtgtcggtgtcgtgttggtgtcgaacacaacatgtgtctgacacatggacacgc 44132602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 251 - 345
Target Start/End: Complemental strand, 24613735 - 24613641
Alignment:
Q  251 cacataattcagtgtaactatatgtgtcgttgtcgtgttggtgtcagacacaatacgtgtctgacacaaggacacgcctaattcgagaagtgtcc 345  Q
    ||||||||||| ||||| || | |||||| |||| ||| |||||||||||| | ||||||||||||| |||||||| ||||| | || |||||||    
T  24613735 cacataattcaatgtaagtacaagtgtcggtgtcatgtcggtgtcagacacgacacgtgtctgacaccaggacacgtctaatcctaggagtgtcc 24613641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 251 - 332
Target Start/End: Original strand, 47264011 - 47264092
Alignment:
Q  251 cacataattcagtgtaactatatgtgtcgttgtcgtgttggtgtcagacacaatacgtgtctgacacaaggacacgcctaat 332  Q
    |||||||||| |||||| || |  ||||| |||| ||||||||||||| || | || |||||||||| ||||||||||||||    
T  47264011 cacataattctgtgtaattacaaatgtcgatgtcatgttggtgtcagatacgacacatgtctgacaccaggacacgcctaat 47264092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 251 - 325
Target Start/End: Complemental strand, 5414206 - 5414132
Alignment:
Q  251 cacataattcagtgtaactatatgtgtcgttgtcgtgttggtgtcagacacaatacgtgtctgacacaaggacac 325  Q
    |||| ||| |||||||| ||||||| ||| ||||||||  ||||| ||||| | |||||||||||||| ||||||    
T  5414206 cacaaaatgcagtgtaattatatgtatcggtgtcgtgtcagtgtcggacacgacacgtgtctgacacagggacac 5414132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 348
Target Start/End: Complemental strand, 46084025 - 46083928
Alignment:
Q  251 cacataattcagtgtaactatatgtgtcgttgtcgtgttggtgtcagacacaatacgtgtctgacacaaggacacgcctaattcgagaagtgtccatg 348  Q
    ||||||||  ||||||| ||||||||||| ||||||||  || || ||||| | ||||||||||| |  |||||||||| ||  ||| ||||||||||    
T  46084025 cacataatctagtgtaattatatgtgtcggtgtcgtgtcagtatcggacacgacacgtgtctgacgcggggacacgccttataagaggagtgtccatg 46083928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 252 - 332
Target Start/End: Complemental strand, 5225646 - 5225566
Alignment:
Q  252 acataattcagtgtaactatatgtgtcgttgtcgtgttggtgtcagacacaatacgtgtctgacacaaggacacgcctaat 332  Q
    |||||||||| || ||  |||||||||| ||||||||||||||| ||||| |||| | || ||| |  |||||||||||||    
T  5225646 acataattcaatgcaataatatgtgtcggtgtcgtgttggtgtcggacacgatacatatcggaccccgggacacgcctaat 5225566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 261 - 301
Target Start/End: Original strand, 40742626 - 40742666
Alignment:
Q  261 agtgtaactatatgtgtcgttgtcgtgttggtgtcagacac 301  Q
    ||||||| ||||||||||| |||||||| ||||||||||||    
T  40742626 agtgtaattatatgtgtcgatgtcgtgtcggtgtcagacac 40742666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 255 - 345
Target Start/End: Complemental strand, 9777 - 9687
Alignment:
Q  255 taattcagtgtaactatatgtgtcgttgtcgtgttggtgtcagacacaatacgtgtctgacacaaggacacgcctaattcgagaagtgtcc 345  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||||| | || |||||||||   |||||||  |||| |||| |||||||    
T  9777 taattcagtgtaattatatgtgtcggtgtcgtgttggtgtcagacacgacacttgtctgacatcgggacacgtataatccgaggagtgtcc 9687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 251 - 345
Target Start/End: Complemental strand, 15816163 - 15816069
Alignment:
Q  251 cacataattcagtgtaactatatgtgtcgttgtcgtgttggtgtcagacacaatacgtgtctgacacaaggacacgcctaattcgagaagtgtcc 345  Q
    ||||||||| ||||||| |||| |||||| ||||||||||||||| ||||| | |||  || |||||  ||||||||||||| ||||||||||||    
T  15816163 cacataatttagtgtaattataagtgtcggtgtcgtgttggtgtcggacacgacacgaatccgacaccgggacacgcctaatccgagaagtgtcc 15816069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 251 - 301
Target Start/End: Complemental strand, 11927120 - 11927070
Alignment:
Q  251 cacataattcagtgtaactatatgtgtcgttgtcgtgttggtgtcagacac 301  Q
    ||||||||||||||||| ||||||||||| |||||||||||||||| ||||    
T  11927120 cacataattcagtgtaattatatgtgtcggtgtcgtgttggtgtcatacac 11927070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 250 - 332
Target Start/End: Complemental strand, 12570543 - 12570462
Alignment:
Q  250 acacataattcagtgtaactatatgtgtcgttgtcgtgttggtgtcagacacaatacgtgtctgacacaaggacacgcctaat 332  Q
    |||||||||| ||||||| ||||||||||| ||| || | |||||||||||| | ||||||| ||||| ||||||||||||||    
T  12570543 acacataattaagtgtaattatatgtgtcgatgt-gtatcggtgtcagacactacacgtgtccgacaccaggacacgcctaat 12570462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 251 - 345
Target Start/End: Complemental strand, 29447144 - 29447050
Alignment:
Q  251 cacataattcagtgtaactatatgtgtcgttgtcgtgttggtgtcagacacaatacgtgtctgacacaaggacacgcctaattcgagaagtgtcc 345  Q
    ||||||||||| |||||||| | |||||| |||| ||| |||||| ||||| | | ||||||||||| |||||||||||||| | || |||||||    
T  29447144 cacataattcaatgtaactacaagtgtcggtgtcatgtcggtgtcggacacgacatgtgtctgacaccaggacacgcctaatcctaggagtgtcc 29447050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 251 - 329
Target Start/End: Complemental strand, 26902209 - 26902131
Alignment:
Q  251 cacataattcagtgtaactatatgtgtcgttgtcgtgttggtgtcagacacaatacgtgtctgacacaaggacacgcct 329  Q
    ||||||||||||||||| ||||||||||| |||||| |  ||||| ||||| | ||||||||| |||  ||||||||||    
T  26902209 cacataattcagtgtaattatatgtgtcggtgtcgtatgagtgtcggacacgacacgtgtctggcacggggacacgcct 26902131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 281 - 347
Target Start/End: Complemental strand, 41831950 - 41831884
Alignment:
Q  281 tgtcgtgttggtgtcagacacaatacgtgtctgacacaaggacacgcctaattcgagaagtgtccat 347  Q
    ||||||||||||||| ||||| |||||| || ||||  |||||||| |||||||||| |||||||||    
T  41831950 tgtcgtgttggtgtcggacacgatacgtatccgacaacaggacacgtctaattcgaggagtgtccat 41831884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 251 - 345
Target Start/End: Original strand, 11803284 - 11803378
Alignment:
Q  251 cacataattcagtgtaactatatgtgtcgttgtcgtgttggtgtcagacacaatacgtgtctgacacaaggacacgcctaattcgagaagtgtcc 345  Q
    ||||||||||||||||| ||||||||| | ||| ||||||||||  || || | || |||| |||||| | ||||| ||||| |||| |||||||    
T  11803284 cacataattcagtgtaattatatgtgttggtgttgtgttggtgttggatacgacacatgtccgacacaggtacacgtctaatccgaggagtgtcc 11803378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 251 - 301
Target Start/End: Original strand, 11944690 - 11944740
Alignment:
Q  251 cacataattcagtgtaactatatgtgtcgttgtcgtgttggtgtcagacac 301  Q
    ||||||| ||||||||| ||||||||||| |||||||||| ||||| ||||    
T  11944690 cacataactcagtgtaattatatgtgtcggtgtcgtgttgatgtcatacac 11944740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 251 - 301
Target Start/End: Original strand, 29447469 - 29447519
Alignment:
Q  251 cacataattcagtgtaactatatgtgtcgttgtcgtgttggtgtcagacac 301  Q
    ||||||||| ||||||| ||||||||| | |||||||| ||||||||||||    
T  29447469 cacataattaagtgtaattatatgtgttggtgtcgtgtcggtgtcagacac 29447519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 351
Target Start/End: Original strand, 14134752 - 14134813
Alignment:
Q  290 ggtgtcagacacaatacgtgtctgacacaaggacacgcctaattcgagaagtgtccatgttt 351  Q
    ||||||| |||| | ||||||| | ||| ||||||||||||||||||| ||||||| |||||    
T  14134752 ggtgtcaaacacgacacgtgtccgtcaccaggacacgcctaattcgaggagtgtccgtgttt 14134813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 251 - 295
Target Start/End: Complemental strand, 24362236 - 24362192
Alignment:
Q  251 cacataattcagtgtaactatatgtgtcgttgtcgtgttggtgtc 295  Q
    ||||||||||||||||| ||||||||||  |||||||| ||||||    
T  24362236 cacataattcagtgtaattatatgtgtcaatgtcgtgtcggtgtc 24362192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 251 - 295
Target Start/End: Original strand, 25566866 - 25566910
Alignment:
Q  251 cacataattcagtgtaactatatgtgtcgttgtcgtgttggtgtc 295  Q
    ||||||||||||||||| || | |||||| |||||||||||||||    
T  25566866 cacataattcagtgtaattacaagtgtcggtgtcgtgttggtgtc 25566910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 301
Target Start/End: Complemental strand, 28385026 - 28384978
Alignment:
Q  253 cataattcagtgtaactatatgtgtcgttgtcgtgttggtgtcagacac 301  Q
    ||||||||||||||| ||||||||||| |||| |||  |||||||||||    
T  28385026 cataattcagtgtaattatatgtgtcggtgtcatgtcagtgtcagacac 28384978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 274 - 344
Target Start/End: Original strand, 30183597 - 30183667
Alignment:
Q  274 gtgtcgttgtcgtgttggtgtcagacacaatacgtgtctgacacaaggacacgcctaattcgagaagtgtc 344  Q
    |||||| |||||||||||| |||||||| | ||||||| |||||  |||||||||||||||||||||||||    
T  30183597 gtgtcggtgtcgtgttggtatcagacacgacacgtgtccgacactgggacacgcctaattcgagaagtgtc 30183667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 252 - 345
Target Start/End: Original strand, 18592099 - 18592192
Alignment:
Q  252 acataattcagtgtaactatatgtgtcgttgtcgtgttggtgtcagacacaatacgtgtctgacacaaggacacgcctaattcgagaagtgtcc 345  Q
    |||||||||| ||||| |||||||| || |||||||| |||||| ||||||| ||||||||||||   ||||||| |||||||||  |||||||    
T  18592099 acataattcaatgtaattatatgtgccggtgtcgtgtcggtgtcggacacaacacgtgtctgacatcgggacacggctaattcgatgagtgtcc 18592192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 285 - 348
Target Start/End: Original strand, 42893408 - 42893471
Alignment:
Q  285 gtgttggtgtcagacacaatacgtgtctgacacaaggacacgcctaattcgagaagtgtccatg 348  Q
    |||| |||||||||||||| ||||||| ||||| ||||||||||||||  ||| ||||||||||    
T  42893408 gtgtcggtgtcagacacaacacgtgtccgacaccaggacacgcctaatatgaggagtgtccatg 42893471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 251 - 345
Target Start/End: Original strand, 3966528 - 3966622
Alignment:
Q  251 cacataattcagtgtaactatatgtgtcgttgtcgtgttggtgtcagacacaatacgtgtctgacacaaggacacgcctaattcgagaagtgtcc 345  Q
    |||| |||||||||||| ||||||||||| ||||||||  ||||| ||||||| | |||||  ||| | ||||||| ||||| |||| |||||||    
T  3966528 cacacaattcagtgtaattatatgtgtcggtgtcgtgtcagtgtcggacacaacatgtgtccaacagagggacacgtctaatccgaggagtgtcc 3966622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 251 - 329
Target Start/End: Original strand, 21814286 - 21814364
Alignment:
Q  251 cacataattcagtgtaactatatgtgtcgttgtcgtgttggtgtcagacacaatacgtgtctgacacaaggacacgcct 329  Q
    |||| ||| |||||||| ||||||||||| |||||||| |||||| ||||| | ||||||||| |||  ||||||||||    
T  21814286 cacaaaatgcagtgtaattatatgtgtcggtgtcgtgtcggtgtcggacacgacacgtgtctggcacggggacacgcct 21814364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 252 - 328
Target Start/End: Original strand, 21542056 - 21542132
Alignment:
Q  252 acataattcagtgtaactatatgtgtcgttgtcgtgttggtgtcagacacaatacgtgtctgacacaaggacacgcc 328  Q
    |||||||||||||||| || | |||||| |||||||| |||||| ||||| | ||||||| |||||  |||||||||    
T  21542056 acataattcagtgtaattacaagtgtcggtgtcgtgtcggtgtcggacacgacacgtgtccgacaccgggacacgcc 21542132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 252 - 344
Target Start/End: Complemental strand, 36642795 - 36642704
Alignment:
Q  252 acataattcagtgtaactatatgtgtcgttgtcgtgttggtgtcagacacaatacgtgtctgacacaaggacacgcctaattcgagaagtgtc 344  Q
    ||||| || ||||||| |||| |||||| |||| |||||||||| ||||| | ||||||| |||||  |||||||||||||| ||| ||||||    
T  36642795 acatattttagtgtaaatataagtgtcggtgtcatgttggtgtcggacacgacacgtgtccgacacg-ggacacgcctaattggaggagtgtc 36642704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 288 - 343
Target Start/End: Original strand, 27932286 - 27932341
Alignment:
Q  288 ttggtgtcagacacaatacgtgtctgacacaaggacacgcctaattcgagaagtgt 343  Q
    |||||||| ||||| | ||||||| ||||| ||||||||||||||||||| |||||    
T  27932286 ttggtgtcggacacgacacgtgtcggacaccaggacacgcctaattcgaggagtgt 27932341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 251 - 317
Target Start/End: Original strand, 6401523 - 6401589
Alignment:
Q  251 cacataattcagtgtaactatatgtgtcgttgtcgtgttggtgtcagacacaatacgtgtctgacac 317  Q
    |||| ||| |||||||| ||||||||||| ||||||||  ||||| ||||| | |||||||||||||    
T  6401523 cacaaaatacagtgtaattatatgtgtcggtgtcgtgtcagtgtcggacacgacacgtgtctgacac 6401589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 343
Target Start/End: Original strand, 26312822 - 26312875
Alignment:
Q  290 ggtgtcagacacaatacgtgtctgacacaaggacacgcctaattcgagaagtgt 343  Q
    |||||| ||||| ||||||||||||||| ||||||| |||||| |||| |||||    
T  26312822 ggtgtcggacacgatacgtgtctgacaccaggacacacctaatccgaggagtgt 26312875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 288
Target Start/End: Complemental strand, 41091291 - 41091254
Alignment:
Q  251 cacataattcagtgtaactatatgtgtcgttgtcgtgt 288  Q
    ||||||||||||||||| ||||||||||| ||||||||    
T  41091291 cacataattcagtgtaattatatgtgtcgatgtcgtgt 41091254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 252 - 332
Target Start/End: Original strand, 21522776 - 21522856
Alignment:
Q  252 acataattcagtgtaactatatgtgtcgttgtcgtgttggtgtcagacacaatacgtgtctgacacaaggacacgcctaat 332  Q
    |||||||||||||||| || |  ||||| |||||||| |||||| ||||| | ||||||| | |||  |||||||||||||    
T  21522776 acataattcagtgtaattacaattgtcggtgtcgtgtcggtgtcggacacgacacgtgtccggcaccgggacacgcctaat 21522856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 252 - 332
Target Start/End: Original strand, 21533342 - 21533422
Alignment:
Q  252 acataattcagtgtaactatatgtgtcgttgtcgtgttggtgtcagacacaatacgtgtctgacacaaggacacgcctaat 332  Q
    |||||||||||||||| || |  ||||| |||||||| |||||| ||||| | ||||||| | |||  |||||||||||||    
T  21533342 acataattcagtgtaattacaattgtcggtgtcgtgtcggtgtcggacacgacacgtgtccggcaccgggacacgcctaat 21533422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 251 - 345
Target Start/End: Original strand, 9828069 - 9828163
Alignment:
Q  251 cacataattcagtgtaactatatgtgtcgttgtcgtgttggtgtcagacacaatacgtgtctgacacaaggacacgcctaattcgagaagtgtcc 345  Q
    ||||||||||||||||| | ||||||||| ||||||||  ||||||||||| | ||||||| |||||  ||||||| ||||| |||| |||||||    
T  9828069 cacataattcagtgtaattttatgtgtcggtgtcgtgtccgtgtcagacacgacacgtgtccgacaccgggacacgtctaatccgaggagtgtcc 9828163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 251 - 332
Target Start/End: Complemental strand, 16164349 - 16164268
Alignment:
Q  251 cacataattcagtgtaactatatgtgtcgttgtcgtgttggtgtcagacacaatacgtgtctgacacaaggacacgcctaat 332  Q
    ||||||||| | ||||| |||||||||| |||||||||||||||  ||| ||| ||||||| ||||| ||||||||||||||    
T  16164349 cacataatttaatgtaattatatgtgtcattgtcgtgttggtgttggacgcaacacgtgtccgacaccaggacacgcctaat 16164268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 251 - 345
Target Start/End: Original strand, 47989522 - 47989616
Alignment:
Q  251 cacataattcagtgtaactatatgtgtcgttgtcgtgttggtgtcagacacaatacgtgtctgacacaaggacacgcctaattcgagaagtgtcc 345  Q
    ||||||||||||||||| || | |||||| |||||||| |||||| ||||| | || |||||||||   ||||||||||||| |||| |||||||    
T  47989522 cacataattcagtgtaattacaagtgtcggtgtcgtgtcggtgtcggacacgacacatgtctgacatcgggacacgcctaatccgaggagtgtcc 47989616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 252 - 332
Target Start/End: Complemental strand, 6612204 - 6612124
Alignment:
Q  252 acataattcagtgtaactatatgtgtcgttgtcgtgttggtgtcagacacaatacgtgtctgacacaaggacacgcctaat 332  Q
    |||||||||||||||| || | |||||| |||||||| | |||| ||||| ||| ||||| ||||| ||||||||||||||    
T  6612204 acataattcagtgtaattacaagtgtcggtgtcgtgtcgatgtcggacacgatatgtgtccgacaccaggacacgcctaat 6612124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 251 - 295
Target Start/End: Original strand, 34371738 - 34371782
Alignment:
Q  251 cacataattcagtgtaactatatgtgtcgttgtcgtgttggtgtc 295  Q
    ||||||||||||||||| ||||||||||| |||||||||||||||    
T  34371738 cacataattcagtgtaattatatgtgtcggtgtcgtgttggtgtc 34371782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 251 - 301
Target Start/End: Original strand, 44482255 - 44482305
Alignment:
Q  251 cacataattcagtgtaactatatgtgtcgttgtcgtgttggtgtcagacac 301  Q
    ||||||||||||||||| ||||||||||| |||||||| |||||| |||||    
T  44482255 cacataattcagtgtaattatatgtgtcggtgtcgtgtcggtgtcggacac 44482305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 251 - 343
Target Start/End: Original strand, 5944308 - 5944400
Alignment:
Q  251 cacataattcagtgtaactatatgtgtcgttgtcgtgttggtgtcagacacaatacgtgtctgacacaaggacacgcctaattcgagaagtgt 343  Q
    ||||||||||||||||| |||| |||||| |||||||| | || | ||||||| || |||| |||||  ||| ||||||||| |||| |||||    
T  5944308 cacataattcagtgtaattataagtgtcggtgtcgtgtcgatgacggacacaacacatgtccgacaccgggatacgcctaatccgaggagtgt 5944400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 285 - 348
Target Start/End: Complemental strand, 40258944 - 40258881
Alignment:
Q  285 gtgttggtgtcagacacaatacgtgtctgacacaaggacacgcctaattcgagaagtgtccatg 348  Q
    |||| |||||||||||| | || |||| ||||| |||||||||||||| |||| ||||||||||    
T  40258944 gtgtcggtgtcagacacgacacctgtccgacaccaggacacgcctaatccgaggagtgtccatg 40258881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 251 - 301
Target Start/End: Original strand, 25361911 - 25361961
Alignment:
Q  251 cacataattcagtgtaactatatgtgtcgttgtcgtgttggtgtcagacac 301  Q
    ||||||||||||||||| ||||||||||  |||||||| |||||| |||||    
T  25361911 cacataattcagtgtaattatatgtgtcagtgtcgtgtcggtgtcggacac 25361961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 251 - 317
Target Start/End: Original strand, 25934641 - 25934707
Alignment:
Q  251 cacataattcagtgtaactatatgtgtcgttgtcgtgttggtgtcagacacaatacgtgtctgacac 317  Q
    |||| ||| |||||||| ||||||||||| | |||||| |||||| ||||| | |||||||||||||    
T  25934641 cacaaaatacagtgtaattatatgtgtcggtatcgtgtcggtgtcggacacgacacgtgtctgacac 25934707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 332
Target Start/End: Original strand, 6427489 - 6427570
Alignment:
Q  251 cacataattcagtgtaactatatgtgtcgttgtcgtgttggtgtcagacacaatacgtgtctgacacaaggacacgcctaat 332  Q
    ||||||||||| |||||||| | |||||  |||||||| || ||| ||||| | ||||||| |||||  |||||||||||||    
T  6427489 cacataattcaatgtaactacaagtgtcagtgtcgtgtaggcgtcggacacgacacgtgtccgacaccgggacacgcctaat 6427570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 285 - 345
Target Start/End: Complemental strand, 32461464 - 32461404
Alignment:
Q  285 gtgttggtgtcagacacaatacgtgtctgacacaaggacacgcctaattcgagaagtgtcc 345  Q
    |||| |||||| ||||| | |||||||||||||  ||||||||||||| | ||||||||||    
T  32461464 gtgtcggtgtcggacacgacacgtgtctgacactgggacacgcctaatccaagaagtgtcc 32461404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 255 - 332
Target Start/End: Complemental strand, 6630942 - 6630865
Alignment:
Q  255 taattcagtgtaactatatgtgtcgttgtcgtgttggtgtcagacacaatacgtgtctgacacaaggacacgcctaat 332  Q
    ||||||||||||| ||||||||||| ||||||||||||||| ||||||| ||||| | ||||| | ||||| ||||||    
T  6630942 taattcagtgtaattatatgtgtcgatgtcgtgttggtgtcggacacaacacgtgcccgacaccaagacacacctaat 6630865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 251 - 348
Target Start/End: Complemental strand, 27229345 - 27229248
Alignment:
Q  251 cacataattcagtgtaactatatgtgtcgttgtcgtgttggtgtcagacacaatacgtgtctgacacaaggacacgcctaattcgagaagtgtccatg 348  Q
    ||||||||| ||||||| |||| || ||| ||||||||   |||||||||| ||||||||  ||||| ||||||||||||||||||| | ||||||||    
T  27229345 cacataatttagtgtaattataagtatcggtgtcgtgtcactgtcagacacgatacgtgttcgacactaggacacgcctaattcgaggaatgtccatg 27229248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 251 - 342
Target Start/End: Original strand, 24339667 - 24339758
Alignment:
Q  251 cacataattcagtgtaactatatgtgtcgttgtcgtgttggtgtcagacacaatacgtgtctgacacaaggacacgcctaattcgagaagtg 342  Q
    ||||||||||||||||| || | |||||| |||||||| |||||| ||||| | |||| || |||||  ||||||||||||| |||| ||||    
T  24339667 cacataattcagtgtaattacaagtgtcggtgtcgtgtcggtgtcggacacgacacgtatccgacaccgggacacgcctaatccgaggagtg 24339758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 250 - 311
Target Start/End: Complemental strand, 26329417 - 26329356
Alignment:
Q  250 acacataattcagtgtaactatatgtgtcgttgtcgtgttggtgtcagacacaatacgtgtc 311  Q
    ||||| |||||||||||| |||||||||||  ||||||| |||||||||||| | |||||||    
T  26329417 acacacaattcagtgtaattatatgtgtcggcgtcgtgtcggtgtcagacacgacacgtgtc 26329356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 285 - 345
Target Start/End: Original strand, 598256 - 598316
Alignment:
Q  285 gtgttggtgtcagacacaatacgtgtctgacacaaggacacgcctaattcgagaagtgtcc 345  Q
    |||| |||||||||||| | ||||||| |||||  ||||||||||||| ||||||||||||    
T  598256 gtgtcggtgtcagacacgacacgtgtccgacaccgggacacgcctaatccgagaagtgtcc 598316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 251 - 345
Target Start/End: Original strand, 7438731 - 7438825
Alignment:
Q  251 cacataattcagtgtaactatatgtgtcgttgtcgtgttggtgtcagacacaatacgtgtctgacacaaggacacgcctaattcgagaagtgtcc 345  Q
    ||||||||||| ||||| || | |||||| |||| ||| ||||||| |||| | || |||  ||||| |||||||||||||||| || |||||||    
T  7438731 cacataattcaatgtaattacaagtgtcggtgtcatgtcggtgtcaaacacgacacatgtgcgacactaggacacgcctaattcaaggagtgtcc 7438825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 288
Target Start/End: Complemental strand, 22602744 - 22602707
Alignment:
Q  251 cacataattcagtgtaactatatgtgtcgttgtcgtgt 288  Q
    ||||||||||||||||| ||||||||||| ||||||||    
T  22602744 cacataattcagtgtaattatatgtgtcggtgtcgtgt 22602707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 285 - 345
Target Start/End: Original strand, 21880200 - 21880260
Alignment:
Q  285 gtgttggtgtcagacacaatacgtgtctgacacaaggacacgcctaattcgagaagtgtcc 345  Q
    |||| |||||| ||||| | || |||| ||||| |||||||||||||| ||||||||||||    
T  21880200 gtgtcggtgtcggacacgacacatgtccgacaccaggacacgcctaatccgagaagtgtcc 21880260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 251 - 351
Target Start/End: Complemental strand, 26033495 - 26033395
Alignment:
Q  251 cacataattcagtgtaactatatgtgtcgttgtcgtgttggtgtcagacacaatacgtgtctgacacaaggacacgcctaattcgagaagtgtccatgtt 350  Q
    ||||||||||||||||| || | |||||| | |||||| |||||||||||  | ||||||| || ||   ||||| |||||| |||| ||||||| ||||    
T  26033495 cacataattcagtgtaattacaagtgtcggtctcgtgtcggtgtcagacatgacacgtgtccgataccgcgacacacctaatccgaggagtgtccgtgtt 26033396  T
Q  351 t 351  Q
    |    
T  26033395 t 26033395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 251 - 332
Target Start/End: Original strand, 16766722 - 16766803
Alignment:
Q  251 cacataattcagtgtaactatatgtgtcgttgtcgtgttggtgtcagacacaatacgtgtctgacacaaggacacgcctaat 332  Q
    ||||||||||||||||| || | |||||| |||||||| |||||| ||||||| ||||||| |||||  |||||||||||||    
T  16766722 cacataattcagtgtaattacaagtgtcggtgtcgtgtcggtgtcggacacaacacgtgtccgacaccgggacacgcctaat 16766803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 251 - 329
Target Start/End: Original strand, 18367861 - 18367939
Alignment:
Q  251 cacataattcagtgtaactatatgtgtcgttgtcgtgttggtgtcagacacaatacgtgtctgacacaaggacacgcct 329  Q
    |||| ||| |||||||| ||||||||||| |||||||| |||||||||||| | || ||||||||||  ||||||||||    
T  18367861 cacaaaatgcagtgtaattatatgtgtcggtgtcgtgtcggtgtcagacacgacacatgtctgacacggggacacgcct 18367939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 251 - 345
Target Start/End: Complemental strand, 17327689 - 17327601
Alignment:
Q  251 cacataattcagtgtaactatatgtgtcgttgtcgtgttggtgtcagacacaatacgtgtctgacacaaggacacgcctaattcgagaagtgtcc 345  Q
    ||||||||| ||||||||||||||||||  |||||||| ||      |||| | |||||||||||||| ||||||||||||| |||| |||||||    
T  17327689 cacataatttagtgtaactatatgtgtcagtgtcgtgtcgg------acacgacacgtgtctgacacagggacacgcctaatccgaggagtgtcc 17327601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 251 - 329
Target Start/End: Complemental strand, 16488624 - 16488546
Alignment:
Q  251 cacataattcagtgtaactatatgtgtcgttgtcgtgttggtgtcagacacaatacgtgtctgacacaaggacacgcct 329  Q
    |||| ||| |||||||| ||||||||||| |||||||| |||||| ||||| | ||||||||| |||  ||||||||||    
T  16488624 cacaaaatgcagtgtaattatatgtgtcggtgtcgtgtcggtgtcggacacgacacgtgtctggcacggggacacgcct 16488546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 251 - 295
Target Start/End: Original strand, 26562714 - 26562758
Alignment:
Q  251 cacataattcagtgtaactatatgtgtcgttgtcgtgttggtgtc 295  Q
    ||||||||||||||||| ||||||||||| |||||||| ||||||    
T  26562714 cacataattcagtgtaattatatgtgtcgatgtcgtgtcggtgtc 26562758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 257 - 301
Target Start/End: Complemental strand, 34385003 - 34384959
Alignment:
Q  257 attcagtgtaactatatgtgtcgttgtcgtgttggtgtcagacac 301  Q
    ||||||||||| ||||||||||| | |||||||||||||||||||    
T  34385003 attcagtgtaattatatgtgtcggtttcgtgttggtgtcagacac 34384959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 251 - 337
Target Start/End: Complemental strand, 8365553 - 8365467
Alignment:
Q  251 cacataattcagtgtaactatatgtgtcgttgtcgtgttggtgtcagacacaatacgtgtctgacacaaggacacgcctaattcgag 337  Q
    |||||||||| |||||| || | |||||| |||||||| ||| || ||||| | ||||||| |||||  ||||||||||||| ||||    
T  8365553 cacataattcggtgtaattacaagtgtcggtgtcgtgtcggtatcggacacgacacgtgtccgacactgggacacgcctaatccgag 8365467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 252 - 298
Target Start/End: Complemental strand, 8931635 - 8931589
Alignment:
Q  252 acataattcagtgtaactatatgtgtcgttgtcgtgttggtgtcaga 298  Q
    |||||||||||| ||| ||||||||||| |||||||| |||||||||    
T  8931635 acataattcagtataattatatgtgtcgatgtcgtgtcggtgtcaga 8931589  T

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Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 255 - 301
Target Start/End: Original strand, 28862151 - 28862197
Alignment:
Q  255 taattcagtgtaactatatgtgtcgttgtcgtgttggtgtcagacac 301  Q
    |||||||||||||  |||||||||| ||||||||||||||| |||||    
T  28862151 taattcagtgtaatcatatgtgtcggtgtcgtgttggtgtctgacac 28862197  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 288
Target Start/End: Complemental strand, 9025528 - 9025491
Alignment:
Q  251 cacataattcagtgtaactatatgtgtcgttgtcgtgt 288  Q
    ||||||||||||||||| ||||||||||| ||||||||    
T  9025528 cacataattcagtgtaattatatgtgtcggtgtcgtgt 9025491  T

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Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 252 - 301
Target Start/End: Complemental strand, 9195787 - 9195738
Alignment:
Q  252 acataattcagtgtaactatatgtgtcgttgtcgtgttggtgtcagacac 301  Q
    |||||||| ||||||| ||||||||||| |||||||| |||||| |||||    
T  9195787 acataatttagtgtaattatatgtgtcggtgtcgtgtaggtgtctgacac 9195738  T

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Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 348
Target Start/End: Original strand, 9629408 - 9629505
Alignment:
Q  251 cacataattcagtgtaactatatgtgtcgttgtcgtgttggtgtcagacacaatacgtgtctgacacaaggacacgcctaattcgagaagtgtccatg 348  Q
    ||||||||||| ||||| ||||||||||| |||||   | ||||| ||||||| | ||||| |||||   |||||| ||||| |||| ||||||||||    
T  9629408 cacataattcaatgtaattatatgtgtcggtgtcggtgtcgtgtcggacacaacatgtgtccgacactgagacacgtctaatccgaggagtgtccatg 9629505  T

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Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 301
Target Start/End: Original strand, 10294134 - 10294182
Alignment:
Q  253 cataattcagtgtaactatatgtgtcgttgtcgtgttggtgtcagacac 301  Q
    |||| |||| ||||| ||||||||||| ||||||||||||||| |||||    
T  10294134 catatttcaatgtaattatatgtgtcggtgtcgtgttggtgtcggacac 10294182  T

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Target: scaffold0008 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 251 - 345
Target Start/End: Complemental strand, 263406 - 263312
Alignment:
Q  251 cacataattcagtgtaactatatgtgtcgttgtcgtgttggtgtcagacacaatacgtgtctgacacaaggacacgcctaattcgagaagtgtcc 345  Q
    ||||||||||||||||| |||| |||||  |||||||| |||||||||||| | ||||||  || || | |||||||||||| |||| |||||||    
T  263406 cacataattcagtgtaattataagtgtcagtgtcgtgtcggtgtcagacacgacacgtgttcgataccaagacacgcctaatccgaggagtgtcc 263312  T

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Target: scaffold0123 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 251 - 317
Target Start/End: Complemental strand, 44559 - 44493
Alignment:
Q  251 cacataattcagtgtaactatatgtgtcgttgtcgtgttggtgtcagacacaatacgtgtctgacac 317  Q
    ||||||||||||||||| ||||||||||| | |||||| |||||  ||||||| ||||||| |||||    
T  44559 cacataattcagtgtaattatatgtgtcggtatcgtgtcggtgttggacacaacacgtgtccgacac 44493  T

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Target: scaffold0623 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0623
Description:

Target: scaffold0623; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 251 - 329
Target Start/End: Complemental strand, 6030 - 5952
Alignment:
Q  251 cacataattcagtgtaactatatgtgtcgttgtcgtgttggtgtcagacacaatacgtgtctgacacaaggacacgcct 329  Q
    |||| ||| |||||||| ||||||||||| |||||| | ||||||  |||| | ||||||||||||||  |||||||||    
T  6030 cacaaaatgcagtgtaattatatgtgtcggtgtcgtatcggtgtcgaacacgacacgtgtctgacacagagacacgcct 5952  T

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Target: scaffold0450 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0450
Description:

Target: scaffold0450; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 275 - 345
Target Start/End: Complemental strand, 8645 - 8575
Alignment:
Q  275 tgtcgttgtcgtgttggtgtcagacacaatacgtgtctgacacaaggacacgcctaattcgagaagtgtcc 345  Q
    ||||| |||||||| ||| || ||||| ||||||||| |||||  | |||||||||||||||| |||||||    
T  8645 tgtcggtgtcgtgtcggtatcggacacgatacgtgtccgacactggtacacgcctaattcgaggagtgtcc 8575  T

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Target: scaffold0136 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 251 - 345
Target Start/End: Complemental strand, 3883 - 3789
Alignment:
Q  251 cacataattcagtgtaactatatgtgtcgttgtcgtgttggtgtcagacacaatacgtgtctgacacaaggacacgcctaattcgagaagtgtcc 345  Q
    ||||||||||||||||| || | |||||  ||||||||||||||| ||||| | || |||| ||||    |||||||||||| |||| |||||||    
T  3883 cacataattcagtgtaattacaagtgtcagtgtcgtgttggtgtcggacacgacacatgtccgacatcgagacacgcctaatccgaggagtgtcc 3789  T

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Target: scaffold0044 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 251 - 345
Target Start/End: Original strand, 53205 - 53299
Alignment:
Q  251 cacataattcagtgtaactatatgtgtcgttgtcgtgttggtgtcagacacaatacgtgtctgacacaaggacacgcctaattcgagaagtgtcc 345  Q
    ||||||||||||||||| |||| |||||| || ||||| |||||| ||||  | ||||||| |||||  |||||||  |||| | ||||||||||    
T  53205 cacataattcagtgtaattataagtgtcggtgccgtgtcggtgtcggacatgacacgtgtccgacaccgggacacgtttaatccaagaagtgtcc 53299  T

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Target: scaffold0122 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 348
Target Start/End: Original strand, 8691 - 8788
Alignment:
Q  251 cacataattcagtgtaactatatgtgtcgttgtcgtgttggtgtcagacacaatacgtgtctgacacaaggacacgcctaattcgagaagtgtccatg 348  Q
    |||||| |||||| ||| |||| |||||| ||||||||   ||||||||   ||||||||| || || | ||||||||| || |||||||||||||||    
T  8691 cacatagttcagtataattataagtgtcggtgtcgtgtctatgtcagacgtgatacgtgtccgatactaagacacgccttatccgagaagtgtccatg 8788  T

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Target: scaffold0019 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 344
Target Start/End: Original strand, 71750 - 71843
Alignment:
Q  251 cacataattcagtgtaactatatgtgtcgttgtcgtgttggtgtcagacacaatacgtgtctgacacaaggacacgcctaattcgagaagtgtc 344  Q
    |||| |||||||||||| ||   |||||  |||||||| |||||| ||||||| ||||||| |||||  ||||||| ||||| |||| ||||||    
T  71750 cacacaattcagtgtaattactagtgtcagtgtcgtgtcggtgtcggacacaacacgtgtccgacaccgggacacgactaatccgaggagtgtc 71843  T

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Target: scaffold0316 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 272 - 308
Target Start/End: Original strand, 16180 - 16216
Alignment:
Q  272 atgtgtcgttgtcgtgttggtgtcagacacaatacgt 308  Q
    |||||||| ||||||||||||||| ||||||||||||    
T  16180 atgtgtcggtgtcgtgttggtgtcggacacaatacgt 16216  T

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Target: scaffold0171 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 251 - 343
Target Start/End: Original strand, 23536 - 23628
Alignment:
Q  251 cacataattcagtgtaactatatgtgtcgttgtcgtgttggtgtcagacacaatacgtgtctgacacaaggacacgcctaattcgagaagtgt 343  Q
    ||||||||||||||||| |||| |||||  |||||| | |||||| ||||| ||| ||||| || ||  |||||||| |||| | ||||||||    
T  23536 cacataattcagtgtaattataagtgtcagtgtcgtttcggtgtcggacacgatatgtgtccgagactgggacacgcataatcccagaagtgt 23628  T

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