View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0740_high_19 (Length: 467)

Name: NF0740_high_19
Description: NF0740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0740_high_19
NF0740_high_19
[»] chr4 (2 HSPs)
chr4 (1-291)||(39131831-39132121)
chr4 (384-438)||(39131684-39131738)
[»] chr7 (6 HSPs)
chr7 (1-282)||(21130615-21130896)
chr7 (5-283)||(18658781-18659059)
chr7 (5-272)||(21111659-21111926)
chr7 (24-196)||(21098402-21098574)
chr7 (24-106)||(21108111-21108193)
chr7 (22-70)||(29213204-29213252)
[»] chr3 (11 HSPs)
chr3 (5-94)||(26744261-26744350)
chr3 (22-115)||(47212442-47212535)
chr3 (5-94)||(26751186-26751275)
chr3 (22-94)||(26714031-26714103)
chr3 (22-94)||(26698879-26698951)
chr3 (22-94)||(26737267-26737339)
chr3 (22-91)||(26690345-26690414)
chr3 (22-91)||(26731656-26731725)
chr3 (22-94)||(26734042-26734114)
chr3 (22-91)||(26694506-26694575)
chr3 (6-118)||(47193355-47193467)


Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 39132121 - 39131831
Alignment:
Q  1 aaattctatgcttaccttcaacacaatatccccacatttcaatcaagttcatgtggttaagccttccaatgatgcttacttcagcaagaaactctccttc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||| ||||||||||||||||||||||||||||||||    
T  39132121 aaattctatgcttaccttcaacacaatatccccacatttcaattaagttcatgtgattgagccttccgatgatgcttacttcagcaagaaactctccttc 39132022  T
Q  101 cccttgattagcttcattcaatctctttattgctgcttgtctttgatccggcaatgtacctaggtatacaacccctcctccacctcttccaatctcaata 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||    
T  39132021 cccttgattagcttcattcaatctctttattgctgcttgtctttgatccggcaatgtacctaggtatacaacccctcctccgccttttccaatctcatta 39131922  T
Q  201 ctgaaattcttggttgccaccttcaactccgagtaactgtatcttctgaatcccaataatgtatgatgatagctattttgatccgaagtag 291  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39131921 ctgaaattcttggttgccaccttcaactccgagtaactgtatcttctgaatcccaataatgtatgatgatagctattttgatccgaagtag 39131831  T

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Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 384 - 438
Target Start/End: Complemental strand, 39131738 - 39131684
Alignment:
Q  384 ttcaccgtattgtttattggttttttggcatagtctttgtgaatttggaccaaac 438  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39131738 ttcaccgtattgtttattggttttttggcatagtctttgtgaatttggaccaaac 39131684  T

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Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 21130615 - 21130896
Alignment:
Q  1 aaattctatgcttaccttcaacacaatatccccacatttcaatcaagttcatgtggttaagccttccaatgatgcttacttcagcaagaaactctccttc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||    
T  21130615 aaattctatgcttaccttcaacacaatatccccacatttcaatcaaattcatgtggttaagcttttcaatgatgcttacttcagcaagaaactctccttc 21130714  T
Q  101 cccttgattagcttcattcaatctctttattgctgcttgtctttgatccggcaatgtacctaggtatacaacccctcctccacctcttccaatctcaata 200  Q
     ||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||   |||||||| |||||||||||||||||||||||  ||    
T  21130715 tccttgtttagcttcattcaatctctttattgctgcatctctttgatccggcaatgtacctctatatacaactcctcctccacctcttccaatctcgtta 21130814  T
Q  201 ctgaaattcttggttgccaccttcaactccgagtaactgtatcttctgaatcccaataatgtatgatgatagctattttgat 282  Q
    |||||||| || || || ||||||||||| |||||| |||||||||||||||| ||||||||| |||||||||||| |||||    
T  21130815 ctgaaattttttgtcgctaccttcaactcggagtaagtgtatcttctgaatcctaataatgtaagatgatagctatgttgat 21130896  T

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Target: chr7; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 5 - 283
Target Start/End: Original strand, 18658781 - 18659059
Alignment:
Q  5 tctatgcttaccttcaacacaatatccccacatttcaatcaagttcatgtggttaagccttccaatgatgcttacttcagcaagaaactctccttcccct 104  Q
    |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |||    
T  18658781 tctatgcttaccttcagcacaatatccccacatatcaatcaagttcatgtggttaagccgtccaatgatgcttacttcagcaagaaattctccttctcct 18658880  T
Q  105 tgattagcttcattcaatctctttattgctgcttgtctttgatccggcaatgtacctaggtatacaacccctcctccacctcttccaatctcaatactga 204  Q
    || ||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||   ||||||| ||||||||||||||||||||||||| ||||||    
T  18658881 tgtttagcttcatttaatctctttattgctgcatgtctttgatctggcaatgtacctctatatacaatccctcctccacctcttccaatctcattactga 18658980  T
Q  205 aattcttggttgccaccttcaactccgagtaactgtatcttctgaatcccaataatgtatgatgatagctattttgatc 283  Q
    ||||||| ||||| | ||||||||| |||||||| |||||||||||||||||||||  |||||||||| ||| ||||||    
T  18658981 aattctttgttgctatcttcaactcggagtaactatatcttctgaatcccaataatacatgatgatagttatgttgatc 18659059  T

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Target: chr7; HSP #3
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 5 - 272
Target Start/End: Original strand, 21111659 - 21111926
Alignment:
Q  5 tctatgcttaccttcaacacaatatccccacatttcaatcaagttcatgtggttaagccttccaatgatgcttacttcagcaagaaactctccttcccct 104  Q
    |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||| |||||||| |||||||| |||    
T  21111659 tctatgcttaccttcagcacaatatccccacatttctatcaagttcatgtggttaagccgtccaatgatacttacttcggcaagaaattctccttctcct 21111758  T
Q  105 tgattagcttcattcaatctctttattgctgcttgtctttgatccggcaatgtacctaggtatacaacccctcctccacctcttccaatctcaatactga 204  Q
    || ||||||||||| ||||||||||||||| | ||||||| ||| ||||||||||||   ||||||| ||||||||||||||||||||||||| ||||||    
T  21111759 tgtttagcttcatttaatctctttattgctacatgtctttcatctggcaatgtacctctatatacaatccctcctccacctcttccaatctcattactga 21111858  T
Q  205 aattcttggttgccaccttcaactccgagtaactgtatcttctgaatcccaataatgtatgatgatag 272  Q
    ||||||| ||||| | ||||||||| ||||||||||||||||||||||| ||||||| ||||||||||    
T  21111859 aattctttgttgctatcttcaactcggagtaactgtatcttctgaatccaaataatgcatgatgatag 21111926  T

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Target: chr7; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 24 - 196
Target Start/End: Complemental strand, 21098574 - 21098402
Alignment:
Q  24 caatatccccacatttcaatcaagttcatgtggttaagccttccaatgatgcttacttcagcaagaaactctccttccccttgattagcttcattcaatc 123  Q
    ||||||||||||||||| ||||| |||||||| ||||||||||||||||| | ||||||||| ||||| || ||||| ||||| |  || |  |  | ||    
T  21098574 caatatccccacatttcgatcaaattcatgtgattaagccttccaatgattcctacttcagctagaaattcaccttcaccttgttgtgcattgtaaagtc 21098475  T
Q  124 tctttattgctgcttgtctttgatccggcaatgtacctaggtatacaacccctcctccacctcttccaatctc 196  Q
    |||||||||| || ||||||  ||| |  ||| | |||  ||||||||| |||||||||||||||||||||||    
T  21098474 tctttattgcagcatgtcttccatcagataatatgcctttgtatacaacacctcctccacctcttccaatctc 21098402  T

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Target: chr7; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 24 - 106
Target Start/End: Complemental strand, 21108193 - 21108111
Alignment:
Q  24 caatatccccacatttcaatcaagttcatgtggttaagccttccaatgatgcttacttcagcaagaaactctccttccccttg 106  Q
    ||||||||||||||||| ||||| |||||||| ||||||||||||||||| | ||||||||| ||||| || ||||| |||||    
T  21108193 caatatccccacatttcgatcaaattcatgtgattaagccttccaatgattcctacttcagctagaaattcaccttctccttg 21108111  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 29213204 - 29213252
Alignment:
Q  22 cacaatatccccacatttcaatcaagttcatgtggttaagccttccaat 70  Q
    ||||||| ||||||| ||||||||| ||||||||||||||| |||||||    
T  29213204 cacaataaccccacaattcaatcaaattcatgtggttaagctttccaat 29213252  T

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Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 5 - 94
Target Start/End: Original strand, 26744261 - 26744350
Alignment:
Q  5 tctatgcttaccttcaacacaatatccccacatttcaatcaagttcatgtggttaagccttccaatgatgcttacttcagcaagaaactc 94  Q
    |||||| || || ||| ||||||| ||||||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26744261 tctatgttttccctcagcacaatagccccacataccaattaagttcatgtggttaagccttccaatgatgcttacttcagcaagaaactc 26744350  T

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Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 22 - 115
Target Start/End: Original strand, 47212442 - 47212535
Alignment:
Q  22 cacaatatccccacatttcaatcaagttcatgtggttaagccttccaatgatgcttacttcagcaagaaactctccttccccttgattagcttc 115  Q
    ||||||| ||||||||||||||||| ||||||||||||||| |||||||| |||||||||| || ||||||||| |||| |||||||| |||||    
T  47212442 cacaataaccccacatttcaatcaaattcatgtggttaagctttccaatgctgcttacttctgcgagaaactcttcttcgccttgatttgcttc 47212535  T

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Target: chr3; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 5 - 94
Target Start/End: Original strand, 26751186 - 26751275
Alignment:
Q  5 tctatgcttaccttcaacacaatatccccacatttcaatcaagttcatgtggttaagccttccaatgatgcttacttcagcaagaaactc 94  Q
    ||||||||| || ||| ||||||| ||||||||  ||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||    
T  26751186 tctatgctttccctcagcacaataaccccacataccaatcaaattcatgtggttaagccttccaatgatgctaacttcggcaagaaactc 26751275  T

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Target: chr3; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 22 - 94
Target Start/End: Original strand, 26714031 - 26714103
Alignment:
Q  22 cacaatatccccacatttcaatcaagttcatgtggttaagccttccaatgatgcttacttcagcaagaaactc 94  Q
    ||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||    
T  26714031 cacaataaccccacattccaatcaaattcatgtggttaagccttccaatgatgctaacttctgcaagaaactc 26714103  T

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Target: chr3; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 22 - 94
Target Start/End: Original strand, 26698879 - 26698951
Alignment:
Q  22 cacaatatccccacatttcaatcaagttcatgtggttaagccttccaatgatgcttacttcagcaagaaactc 94  Q
    ||||||| ||||||||| | ||||| |||||||| |||||||||||||||||||| |||||||||||||||||    
T  26698879 cacaataaccccacattcctatcaaattcatgtgattaagccttccaatgatgctaacttcagcaagaaactc 26698951  T

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Target: chr3; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 22 - 94
Target Start/End: Original strand, 26737267 - 26737339
Alignment:
Q  22 cacaatatccccacatttcaatcaagttcatgtggttaagccttccaatgatgcttacttcagcaagaaactc 94  Q
    ||||||| ||||||||| |||| || ||||||||||||||||||||||||||||| ||||| |||||||||||    
T  26737267 cacaataaccccacattccaattaaattcatgtggttaagccttccaatgatgctaacttctgcaagaaactc 26737339  T

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Target: chr3; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 22 - 91
Target Start/End: Complemental strand, 26690414 - 26690345
Alignment:
Q  22 cacaatatccccacatttcaatcaagttcatgtggttaagccttccaatgatgcttacttcagcaagaaa 91  Q
    ||||||| ||||||||  ||||||| ||||||||||||||||||||||||| ||| ||||||||||||||    
T  26690414 cacaatacccccacataccaatcaaattcatgtggttaagccttccaatgacgctaacttcagcaagaaa 26690345  T

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Target: chr3; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 22 - 91
Target Start/End: Complemental strand, 26731725 - 26731656
Alignment:
Q  22 cacaatatccccacatttcaatcaagttcatgtggttaagccttccaatgatgcttacttcagcaagaaa 91  Q
    ||||||| ||||||||  ||||||| ||||||||||||||||||||||||| ||| ||||||||||||||    
T  26731725 cacaatacccccacataccaatcaaattcatgtggttaagccttccaatgacgctaacttcagcaagaaa 26731656  T

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Target: chr3; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 22 - 94
Target Start/End: Original strand, 26734042 - 26734114
Alignment:
Q  22 cacaatatccccacatttcaatcaagttcatgtggttaagccttccaatgatgcttacttcagcaagaaactc 94  Q
    ||||||| ||||||||| | ||||| |||||||| |||||||||||||||||||| |||||| ||||||||||    
T  26734042 cacaataaccccacattcctatcaaattcatgtgattaagccttccaatgatgctaacttcaacaagaaactc 26734114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 22 - 91
Target Start/End: Complemental strand, 26694575 - 26694506
Alignment:
Q  22 cacaatatccccacatttcaatcaagttcatgtggttaagccttccaatgatgcttacttcagcaagaaa 91  Q
    ||||||| ||||||||  ||||||| ||||||||||||||||||||||||| ||| | ||||||||||||    
T  26694575 cacaatacccccacataccaatcaaattcatgtggttaagccttccaatgacgctaagttcagcaagaaa 26694506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 6 - 118
Target Start/End: Complemental strand, 47193467 - 47193355
Alignment:
Q  6 ctatgcttaccttcaacacaatatccccacatttcaatcaagttcatgtggttaagccttccaatgatgcttacttcagcaagaaactctccttcccctt 105  Q
    ||||| || ||||||||||||||||||||||| ||||| || ||||| ||||| | | | |||||  |||||| |||||| ||||| ||  |||| || |    
T  47193467 ctatgtttcccttcaacacaatatccccacatatcaattaaattcatatggttcaacataccaattgtgcttatttcagctagaaattcagcttctccct 47193368  T
Q  106 gattagcttcatt 118  Q
    ||| |||||||||    
T  47193367 gatgagcttcatt 47193355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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