View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0740_high_2 (Length: 917)

Name: NF0740_high_2
Description: NF0740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0740_high_2
NF0740_high_2
[»] chr8 (10 HSPs)
chr8 (489-888)||(31661511-31661909)
chr8 (82-423)||(31661100-31661445)
chr8 (304-384)||(44004330-44004410)
chr8 (304-384)||(13751454-13751534)
chr8 (306-384)||(6976578-6976656)
chr8 (304-421)||(9946684-9946801)
chr8 (308-384)||(24534902-24534978)
chr8 (304-384)||(21466899-21466979)
chr8 (590-645)||(7409407-7409462)
chr8 (333-384)||(45231612-45231663)
[»] chr6 (12 HSPs)
chr6 (496-682)||(32549404-32549590)
chr6 (297-423)||(17364204-17364331)
chr6 (304-423)||(26497865-26497984)
chr6 (304-384)||(1112507-1112587)
chr6 (586-678)||(19220962-19221054)
chr6 (304-423)||(7201074-7201192)
chr6 (297-423)||(29288423-29288550)
chr6 (304-379)||(609630-609705)
chr6 (499-679)||(1038297-1038477)
chr6 (304-384)||(10669971-10670051)
chr6 (582-664)||(34205908-34205990)
chr6 (586-665)||(33794494-33794573)
[»] chr7 (13 HSPs)
chr7 (496-679)||(33487183-33487366)
chr7 (297-423)||(14802638-14802764)
chr7 (297-423)||(15249631-15249757)
chr7 (529-680)||(24972897-24973048)
chr7 (304-421)||(44767334-44767450)
chr7 (308-384)||(38190283-38190359)
chr7 (304-423)||(33540107-33540225)
chr7 (606-680)||(20183028-20183102)
chr7 (496-623)||(35582244-35582372)
chr7 (304-379)||(40230899-40230974)
chr7 (304-384)||(19468337-19468416)
chr7 (304-423)||(27224296-27224412)
chr7 (505-563)||(42082748-42082806)
[»] scaffold0125 (1 HSPs)
scaffold0125 (297-417)||(5778-5899)
[»] chr1 (9 HSPs)
chr1 (297-390)||(29864675-29864768)
chr1 (308-384)||(50509793-50509869)
chr1 (304-379)||(9672504-9672579)
chr1 (304-422)||(24892022-24892140)
chr1 (496-594)||(28190485-28190583)
chr1 (497-679)||(37543745-37543926)
chr1 (304-384)||(26687705-26687785)
chr1 (337-423)||(50262444-50262529)
chr1 (304-384)||(23688394-23688474)
[»] chr5 (4 HSPs)
chr5 (297-390)||(17535770-17535863)
chr5 (308-384)||(27246224-27246300)
chr5 (304-384)||(11245391-11245471)
chr5 (304-384)||(22868043-22868123)
[»] chr2 (12 HSPs)
chr2 (308-379)||(30707048-30707119)
chr2 (304-384)||(26290425-26290505)
chr2 (304-379)||(2104096-2104171)
chr2 (492-665)||(29927711-29927883)
chr2 (304-384)||(5868993-5869073)
chr2 (586-680)||(32978969-32979063)
chr2 (613-678)||(3256966-3257031)
chr2 (304-384)||(18242158-18242238)
chr2 (620-679)||(37210219-37210278)
chr2 (494-680)||(35426375-35426560)
chr2 (304-384)||(44259836-44259916)
chr2 (539-645)||(35494924-35495030)
[»] chr4 (15 HSPs)
chr4 (297-422)||(16061457-16061583)
chr4 (304-384)||(6131958-6132038)
chr4 (498-658)||(53711686-53711845)
chr4 (496-663)||(47533722-47533889)
chr4 (495-564)||(29010105-29010174)
chr4 (304-384)||(6087060-6087140)
chr4 (304-380)||(6166386-6166462)
chr4 (304-384)||(32727986-32728066)
chr4 (304-374)||(18886184-18886254)
chr4 (496-592)||(22579232-22579328)
chr4 (496-564)||(24894750-24894818)
chr4 (620-679)||(24894662-24894721)
chr4 (304-379)||(36441099-36441173)
chr4 (497-623)||(55520939-55521065)
chr4 (311-384)||(38138766-38138839)
[»] chr3 (4 HSPs)
chr3 (304-384)||(54561108-54561188)
chr3 (496-564)||(1699932-1700000)
chr3 (496-611)||(40362025-40362140)
chr3 (304-379)||(42624768-42624843)


Alignment Details
Target: chr8 (Bit Score: 287; Significance: 1e-160; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 287; E-Value: 1e-160
Query Start/End: Original strand, 489 - 888
Target Start/End: Original strand, 31661511 - 31661909
Alignment:
Q  489 ctttgaggaaaattgcttttcacatttcactcaatgataagaaacactgtgaaatgacaattttaacctcaaattcaatcaatagttaaccatcgctgat 588  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |  ||||    
T  31661511 ctttgaggaaaattgtttttcgcatttcactcaatgataagaaacactatgaaatgacaattttaacctcaaattcaatcaatagttaaccaccattgat 31661610  T
Q  589 taaaatacatcgacagataactgtcgatggggttatattgataattttgtgatgtttcgtagcaacctttgatgtggaaatatcaattttcttctttgaa 688  Q
    ||||||||||| |||| ||||||||||||| |||||||||||||||| |||||||||||||| ||||||||| |||| ||||| ||||||||||||| ||    
T  31661611 taaaatacatcaacagttaactgtcgatggagttatattgataatttcgtgatgtttcgtagaaacctttgacgtgggaatataaattttcttctttaaa 31661710  T
Q  689 tgggggatagataatggacagtactcnnnnnnnncttgaggaccgtcactttggaagactgagcccaattaaactggttgcactctccaaccagctataa 788  Q
    |||||||||||||||||||| |||||        |||||||||||||||||||||||||  ||| |||||||||||||||||||||||||||||||||||    
T  31661711 tgggggatagataatggacaatactc-tttttttcttgaggaccgtcactttggaagacccagctcaattaaactggttgcactctccaaccagctataa 31661809  T
Q  789 atgcgggtgatttcattgcatctagttcgtggaaaggataaagctgcatatcttcgtcttctgtcttctatataaactcattatatattacggttgtttc 888  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  31661810 atgcgggtgatttcattgcatctaattcgtggaaaggataaagctgcatatcttcgtcttctgacttctatataaactcattatatattacggttgtttc 31661909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 82 - 423
Target Start/End: Original strand, 31661100 - 31661445
Alignment:
Q  82 ctccccaacgaaggttagtcatttatgtacagcggtataaacgtcgtaccaatatcacgatnnnnnnnnntta--acaatatatataaccatcatacttt 179  Q
    ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||         | |  |||||||||||||||||||||||||    
T  31661100 ctccccagcgaaggttagtcatttatatacagcggtataaacgtcgtaccaatatcacgataaaaaaaaataacaacaatatatataaccatcatacttt 31661199  T
Q  180 cttgttttgctctaacctaaattaagcattttataatgcctcggggctgttcctatgaattggaggttcggctctcatagtaaaaataggctcttaat-n 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||      
T  31661200 cttgttttgctctaacctaaattaagcattttataatgcctcggggccgttcctatgaattggaagttcggctctcatagtaaaaataggctcttaataa 31661299  T
Q  279 nnnnnncaannnnnnnnnaaagagcaatcttctatttgaattgaaaataacttccgtataatgatcattagccatcaaaatcaaaattagcaattatttt 378  Q
           ||         ||||| ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  31661300 aaaaaataattttttttaaaagaacaatcttctatttgaattgaaaataacttccgtataatgatcattattcatcaaaatcaaaattagcaattatttt 31661399  T
Q  379 ttctaaggaacaca-ttttttcccttagaaatagaaacatggaaca 423  Q
    |||||||||||||| |||||||||||| ||||||||||||||||||    
T  31661400 ttctaaggaacacatttttttcccttataaatagaaacatggaaca 31661445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 304 - 384
Target Start/End: Original strand, 44004330 - 44004410
Alignment:
Q  304 aatcttctatttgaattgaaaataacttccgtataatgatcattagccatcaaaatcaaaattagcaattattttttctaa 384  Q
    |||||||||||| |||||||||||||   ||||||||||| ||||||||||||||||||||||| ||||||||||| ||||    
T  44004330 aatcttctatttaaattgaaaataacactcgtataatgattattagccatcaaaatcaaaattaacaattatttttactaa 44004410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 304 - 384
Target Start/End: Original strand, 13751454 - 13751534
Alignment:
Q  304 aatcttctatttgaattgaaaataacttccgtataatgatcattagccatcaaaatcaaaattagcaattattttttctaa 384  Q
    |||||||||||| |||||||||||||   ||||||||||| |||||||||| |||| ||||||||||||||||||| ||||    
T  13751454 aatcttctatttaaattgaaaataacactcgtataatgattattagccatcgaaattaaaattagcaattatttttactaa 13751534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 306 - 384
Target Start/End: Original strand, 6976578 - 6976656
Alignment:
Q  306 tcttctatttgaattgaaaataacttccgtataatgatcattagccatcaaaatcaaaattagcaattattttttctaa 384  Q
    ||||| |||| ||||||||||||| | ||||||||||| |||||||| |||||| ||||||||||||||||||| ||||    
T  6976578 tcttcaatttaaattgaaaataacattcgtataatgattattagccaccaaaattaaaattagcaattatttttactaa 6976656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 304 - 421
Target Start/End: Complemental strand, 9946801 - 9946684
Alignment:
Q  304 aatcttctatttgaattgaaaataacttccgtataatgatcattagccatcaaaatcaaaattagcaattattttttctaaggaacacattttttccctt 403  Q
    |||||||||||| |||||||||||||   ||||||||||| |||| ||| |||||||||||||| ||||||||||| |||| ||     ||||||  |||    
T  9946801 aatcttctatttaaattgaaaataacactcgtataatgattattaaccaccaaaatcaaaattaccaattatttttactaaagatgtgcttttttaactt 9946702  T
Q  404 agaaatagaaacatggaa 421  Q
    | ||||||||||||||||    
T  9946701 aaaaatagaaacatggaa 9946684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 308 - 384
Target Start/End: Complemental strand, 24534978 - 24534902
Alignment:
Q  308 ttctatttgaattgaaaataacttccgtataatgatcattagccatcaaaatcaaaattagcaattattttttctaa 384  Q
    |||| ||| |||||||||||||   ||||||||||| |||||||| |||||||||||||||||||||||||| ||||    
T  24534978 ttctgtttaaattgaaaataacactcgtataatgattattagccaccaaaatcaaaattagcaattatttttactaa 24534902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 304 - 384
Target Start/End: Original strand, 21466899 - 21466979
Alignment:
Q  304 aatcttctatttgaattgaaaataacttccgtataatgatcattagccatcaaaatcaaaattagcaattattttttctaa 384  Q
    |||||||| |||  ||||||||||||   | ||||||||| ||||||||| |||||||||||||||||||| |||| ||||    
T  21466899 aatcttctgtttatattgaaaataacactcttataatgattattagccatgaaaatcaaaattagcaattagttttactaa 21466979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 590 - 645
Target Start/End: Complemental strand, 7409462 - 7409407
Alignment:
Q  590 aaaatacatcgacagataactgtcgatggggttatattgataattttgtgatgttt 645  Q
    ||||| ||||||||| ||||||||||||| ||||||||||||| || |||||||||    
T  7409462 aaaattcatcgacagttaactgtcgatggagttatattgataaattggtgatgttt 7409407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 333 - 384
Target Start/End: Complemental strand, 45231663 - 45231612
Alignment:
Q  333 cgtataatgatcattagccatcaaaatcaaaattagcaattattttttctaa 384  Q
    ||||||||| | |||||||| |||||| ||||||||||||||||||| ||||    
T  45231663 cgtataatggttattagccaccaaaattaaaattagcaattatttttactaa 45231612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 1e-31; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 496 - 682
Target Start/End: Original strand, 32549404 - 32549590
Alignment:
Q  496 gaaaattgcttttcacatttcactcaatgataagaaacactgtgaaatgacaattttaacctcaaattcaatcaatagttaaccatcgctgattaaaata 595  Q
    |||||||| |||||||||||||| ||||| ||||||||||  | ||||||||| ||||||| ||||||  |||  |||||||| ||||  | |||||||     
T  32549404 gaaaattgtttttcacatttcacacaatgctaagaaacaccattaaatgacaagtttaaccccaaatttcatcggtagttaactatcgtcggttaaaatt 32549503  T
Q  596 catcgacagataactgtcgatggggttatattgataattttgtgatgtttcgtagcaacctttgatgtggaaatatcaattttcttc 682  Q
    ||||| ||| ||| ||||||||  ||||||||| |||||| ||| |||||| ||||||| |||||||||| || |||||||||||||    
T  32549504 catcggcagttaattgtcgatgaagttatattggtaatttcgtggtgtttcatagcaacttttgatgtgggaacatcaattttcttc 32549590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 297 - 423
Target Start/End: Complemental strand, 17364331 - 17364204
Alignment:
Q  297 aaagagcaatcttctatttgaattgaaaataacttccgtataatgatcattagccatcaaaatcaaaattagcaattattttttctaaggaacac--att 394  Q
    ||||||||||||||||||| ||||||||| |||  |||||||||||| |||||||| |  |||||||||||||||||||||||  ||||| ||||   ||    
T  17364331 aaagagcaatcttctatttaaattgaaaagaacagccgtataatgattattagcca-ccgaatcaaaattagcaattatttttattaagggacacgtttt 17364233  T
Q  395 ttttcccttagaaatagaaacatggaaca 423  Q
    ||||  |||||||||||||||||||||||    
T  17364232 tttttacttagaaatagaaacatggaaca 17364204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 304 - 423
Target Start/End: Original strand, 26497865 - 26497984
Alignment:
Q  304 aatcttctatttgaattgaaaa-taacttccgtataatgatcattagccatcaaaatcaaaattagcaattattttttctaaggaacacattttttccct 402  Q
    |||||||||||| ||||||||| ||||   ||||||||||| |||||||| | |||||||||||||||||||||||| |||| | ||   ||||||  ||    
T  26497865 aatcttctatttaaattgaaaaataacacacgtataatgattattagccaccgaaatcaaaattagcaattatttttactaaag-acgtgttttttaact 26497963  T
Q  403 tagaaatagaaacatggaaca 423  Q
    |||||||||||||||||||||    
T  26497964 tagaaatagaaacatggaaca 26497984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 304 - 384
Target Start/End: Original strand, 1112507 - 1112587
Alignment:
Q  304 aatcttctatttgaattgaaaataacttccgtataatgatcattagccatcaaaatcaaaattagcaattattttttctaa 384  Q
    |||||||||||| ||||||||||||| | ||||||||| | |||||||| | |||| ||||||||||||||||||| ||||    
T  1112507 aatcttctatttaaattgaaaataacattcgtataatggttattagccaccgaaattaaaattagcaattatttttactaa 1112587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 586 - 678
Target Start/End: Complemental strand, 19221054 - 19220962
Alignment:
Q  586 gattaaaatacatcgacagataactgtcgatggggttatattgataattttgtgatgtttcgtagcaacctttgatgtggaaatatcaatttt 678  Q
    ||||||||| ||||| ||  |||||||||||| ||||||||| ||||||| ||  |||||| || ||| ||||||||||||||||||||||||    
T  19221054 gattaaaattcatcggcatttaactgtcgatgaggttatattaataatttcgtagtgtttcctaacaatctttgatgtggaaatatcaatttt 19220962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 304 - 423
Target Start/End: Complemental strand, 7201192 - 7201074
Alignment:
Q  304 aatcttctatttgaattgaaaataacttccgtataatgatcattagccatcaaaatcaaaattagcaattattttttctaaggaacacattttttccctt 403  Q
    |||||||||||| |||||||||||||    |||||||||| ||||||||   |||||||||||||||||||||||| |||| | ||   ||||||  |||    
T  7201192 aatcttctatttaaattgaaaataacacttgtataatgattattagccactgaaatcaaaattagcaattatttttactaaag-acgtgttttttaactt 7201094  T
Q  404 agaaatagaaacatggaaca 423  Q
    ||||||||||||||| ||||    
T  7201093 agaaatagaaacatgaaaca 7201074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 297 - 423
Target Start/End: Original strand, 29288423 - 29288550
Alignment:
Q  297 aaagagcaatcttctatttgaattgaaaataacttccgtataatgatcattagccatcaaaatcaaaattagcaattattttttctaaggaac-acattt 395  Q
    ||||| ||||||||||||| ||||||||| ||| |||||||||| || |||||| | | |||| |||||||  | |||||||| ||||||||| |  |||    
T  29288423 aaagatcaatcttctatttaaattgaaaagaacatccgtataataattattagcaaccgaaattaaaattaatatttatttttactaaggaacaagtttt 29288522  T
Q  396 tttcccttagaaatagaaacatggaaca 423  Q
    |||   ||||||||||||||||||||||    
T  29288523 ttttatttagaaatagaaacatggaaca 29288550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 304 - 379
Target Start/End: Original strand, 609630 - 609705
Alignment:
Q  304 aatcttctatttgaattgaaaataacttccgtataatgatcattagccatcaaaatcaaaattagcaattattttt 379  Q
    ||||||||||||  ||||||||||||   ||||||||||| ||||||||| ||| |||||||||||||||| ||||    
T  609630 aatcttctatttatattgaaaataacactcgtataatgattattagccatgaaagtcaaaattagcaattagtttt 609705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 499 - 679
Target Start/End: Complemental strand, 1038477 - 1038297
Alignment:
Q  499 aattgcttttcacatttcactcaatgataagaaacactgtgaaatgacaattttaacctcaaattcaatcaatagttaaccatcgctgattaaaatacat 598  Q
    |||| ||||||||| ||||||||||| |||||||||   ||| || | || |||||| |||||||| ||||| | ||||| | ||  |  |||||| |||    
T  1038477 aattacttttcacacttcactcaatgctaagaaacatcatgatatcataaatttaacttcaaattccatcaacaattaactaccgtcggataaaattcat 1038378  T
Q  599 cgacagataactgtcgatggggttatattgataattttgtgatgtttcgtagcaacctttgatgtggaaatatcaattttc 679  Q
    || ||| |||||   ||  | ||||||||| |||||||||  |||||| || ||||||||||||||| || ||||||||||    
T  1038377 cggcagttaactactgaaagagttatattggtaattttgttgtgtttcataacaacctttgatgtgggaacatcaattttc 1038297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 304 - 384
Target Start/End: Complemental strand, 10670051 - 10669971
Alignment:
Q  304 aatcttctatttgaattgaaaataacttccgtataatgatcattagccatcaaaatcaaaattagcaattattttttctaa 384  Q
    |||||||||||| |||| |||||||| ||||||||||||| ||||| ||   ||||||||||||| ||||| |||| ||||    
T  10670051 aatcttctatttaaattaaaaataacatccgtataatgattattagtcactgaaatcaaaattagtaattagttttactaa 10669971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 582 - 664
Target Start/End: Complemental strand, 34205990 - 34205908
Alignment:
Q  582 cgctgattaaaatacatcgacagataactgtcgatggggttatattgataattttgtgatgtttcgtagcaacctttgatgtg 664  Q
    ||||||||||||| ||||||||| |||||| |||||  |||||||||||| ||| ||| ||||||  || | |||||||||||    
T  34205990 cgctgattaaaatccatcgacaggtaactgccgatgatgttatattgatattttagtggtgtttcccagtatcctttgatgtg 34205908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 586 - 665
Target Start/End: Complemental strand, 33794573 - 33794494
Alignment:
Q  586 gattaaaatacatcgacagataactgtcgatggggttatattgataattttgtgatgtttcgtagcaacctttgatgtgg 665  Q
    ||||||||  ||||||||| ||||||  |||| ||||||||| ||| |||  ||||||||| ||||| ||||||||||||    
T  33794573 gattaaaaatcatcgacagttaactgatgatgaggttatattaatattttcctgatgtttcctagcatcctttgatgtgg 33794494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 2e-27; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 496 - 679
Target Start/End: Original strand, 33487183 - 33487366
Alignment:
Q  496 gaaaattgcttttcacatttcactcaatgataagaaacactgtgaaatgacaattttaacctcaaattcaatcaatagttaaccatcgctgattaaaata 595  Q
    ||||||||||||||||| || |||||||| ||||||||||  | |||| |||| |||||| |||||||| |||  |||||||| |||   | |||||||     
T  33487183 gaaaattgcttttcacactttactcaatgctaagaaacaccataaaataacaaatttaacttcaaattctatcggtagttaactatcagcggttaaaatt 33487282  T
Q  596 catcgacagataactgtcgatggggttatattgataattttgtgatgtttcgtagcaacctttgatgtggaaatatcaattttc 679  Q
    ||||| ||| |||||| | || |||||||||||||||||| ||| |||||| |||||| |||||||| || || ||||||||||    
T  33487283 catcggcagttaactgcccatagggttatattgataatttcgtggtgtttcatagcaatctttgatgcgggaacatcaattttc 33487366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 297 - 423
Target Start/End: Complemental strand, 14802764 - 14802638
Alignment:
Q  297 aaagagcaatcttctatttgaattgaaaataacttccgtataatgatcattagccatcaaaatcaaaattagcaattattttttctaaggaacacatttt 396  Q
    |||||| |||||| ||||| |||||||| |||| ||||||||||||  |||||||||| |||||||||||| |||||||||||  ||||||||| |||||    
T  14802764 aaagagaaatcttttatttaaattgaaattaacatccgtataatgactattagccatcgaaatcaaaattaacaattatttttaataaggaacatatttt 14802665  T
Q  397 ttcccttagaaatagaaacatggaaca 423  Q
    ||   ||||| ||||||| ||||||||    
T  14802664 tttaattagatatagaaatatggaaca 14802638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 297 - 423
Target Start/End: Complemental strand, 15249757 - 15249631
Alignment:
Q  297 aaagagcaatcttctatttgaattgaaaataacttccgtataatgatcattagccatcaaaatcaaaattagcaattattttttctaaggaacacatttt 396  Q
    |||||| |||||| ||||| |||||||| |||| ||||||||||||  |||||||||| |||||||||||| |||||||||||  ||||||||| |||||    
T  15249757 aaagagaaatcttttatttaaattgaaattaacatccgtataatgactattagccatcgaaatcaaaattaacaattatttttaataaggaacatatttt 15249658  T
Q  397 ttcccttagaaatagaaacatggaaca 423  Q
    ||   ||||| ||||||| ||||||||    
T  15249657 tttaattagatatagaaatatggaaca 15249631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 529 - 680
Target Start/End: Complemental strand, 24973048 - 24972897
Alignment:
Q  529 gaaacactgtgaaatgacaattttaacctcaaattcaatcaatagttaaccatcgctgattaaaatacatcgacagataactgtcgatggggttatattg 628  Q
    |||||||  ||||||||||| ||||||  ||| ||| ||| ||||||||| | ||| | ||||||| ||||| ||| ||||||||||||  |||||||||    
T  24973048 gaaacaccatgaaatgacaaatttaactccaatttccatcgatagttaactaccgccggttaaaatccatcggcagttaactgtcgatgatgttatattg 24972949  T
Q  629 ataattttgtgatgtttcgtagcaacctttgatgtggaaatatcaattttct 680  Q
     |||||| |||||||||| |||   |||||||||||| || | |||||||||    
T  24972948 gtaatttcgtgatgtttcctagacccctttgatgtgggaacaacaattttct 24972897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 304 - 421
Target Start/End: Original strand, 44767334 - 44767450
Alignment:
Q  304 aatcttctatttgaattgaaaataacttccgtataatgatcattagccatcaaaatcaaaattagcaattattttttctaaggaacacattttttccctt 403  Q
    |||||||||||| |||||||||||||   ||||||||||| |||||  | | |||||||||||||||||||||||| ||||   |||  ||||||  |||    
T  44767334 aatcttctatttaaattgaaaataacactcgtataatgattattagttaccgaaatcaaaattagcaattatttttactaa-atacatgttttttaactt 44767432  T
Q  404 agaaatagaaacatggaa 421  Q
    ||||||||||||||||||    
T  44767433 agaaatagaaacatggaa 44767450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 308 - 384
Target Start/End: Original strand, 38190283 - 38190359
Alignment:
Q  308 ttctatttgaattgaaaataacttccgtataatgatcattagccatcaaaatcaaaattagcaattattttttctaa 384  Q
    |||||||| |||||||||||||   ||||||||||| |||||||| ||||||||||||||| |||||||||| ||||    
T  38190283 ttctatttaaattgaaaataacactcgtataatgattattagccaccaaaatcaaaattagaaattatttttactaa 38190359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 304 - 423
Target Start/End: Original strand, 33540107 - 33540225
Alignment:
Q  304 aatcttctatttgaattgaaaataacttccgtataatgatcattagccatcaaaatcaaaattagcaattattttttctaaggaacacattttttccctt 403  Q
    |||||||||||| |||||||||||||   ||||||||||| |||| |||   |||||||||||||||||||||||| |||| | ||   ||||||  |||    
T  33540107 aatcttctatttaaattgaaaataacactcgtataatgatgattaaccactgaaatcaaaattagcaattatttttactaaag-acctgttttttaactt 33540205  T
Q  404 agaaatagaaacatggaaca 423  Q
    |||||| |||||||||||||    
T  33540206 agaaattgaaacatggaaca 33540225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 606 - 680
Target Start/End: Complemental strand, 20183102 - 20183028
Alignment:
Q  606 taactgtcgatggggttatattgataattttgtgatgtttcgtagcaacctttgatgtggaaatatcaattttct 680  Q
    ||||||||||||| |||||||||||||||||||| |||||  ||||||||||| | |||| || |||||||||||    
T  20183102 taactgtcgatggagttatattgataattttgtggtgttttatagcaacctttaacgtgggaacatcaattttct 20183028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 496 - 623
Target Start/End: Complemental strand, 35582372 - 35582244
Alignment:
Q  496 gaaaattgcttttcacatttcactcaatgataagaaacactgtgaaatgacaa-ttttaacctcaaattcaatcaatagttaaccatcgctgattaaaat 594  Q
    |||||||||||||| || ||||| | | | ||||||||||| |||||||| || |||||||||||||||| ||   |||||||| | ||| |||||||||    
T  35582372 gaaaattgcttttcccacttcacacgaagctaagaaacactatgaaatgataagttttaacctcaaattctattggtagttaactaccgccgattaaaat 35582273  T
Q  595 acatcgacagataactgtcgatggggtta 623  Q
     || |||||  ||||||||||||| ||||    
T  35582272 tcagcgacaattaactgtcgatggcgtta 35582244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 304 - 379
Target Start/End: Complemental strand, 40230974 - 40230899
Alignment:
Q  304 aatcttctatttgaattgaaaataacttccgtataatgatcattagccatcaaaatcaaaattagcaattattttt 379  Q
    |||||||||||| |||||| ||||||   ||||||||||| |||||||| | |||||||||||| |||||||||||    
T  40230974 aatcttctatttaaattgagaataacactcgtataatgattattagccaccgaaatcaaaattaacaattattttt 40230899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 304 - 384
Target Start/End: Original strand, 19468337 - 19468416
Alignment:
Q  304 aatcttctatttgaattgaaaataacttccgtataatgatcattagccatcaaaatcaaaattagcaattattttttctaa 384  Q
    |||||| ||||| ||||||||||||| | ||||||||||| |||||||| | ||||  |||||||||||||||||| ||||    
T  19468337 aatcttttatttaaattgaaaataacattcgtataatgattattagcca-ccaaatataaattagcaattatttttactaa 19468416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 304 - 423
Target Start/End: Original strand, 27224296 - 27224412
Alignment:
Q  304 aatcttctatttgaattgaaaataacttccgtataatgatcattagccatcaaaatcaaaattagcaattattttttctaaggaacacattttttccctt 403  Q
    |||||||||||| ||  |||||||||   ||||||||||| ||||| || | |||||||||||||||||||||||| || | | |||  ||||||  |||    
T  27224296 aatcttctatttaaa--gaaaataacactcgtataatgattattagtcaccgaaatcaaaattagcaattatttttactgaag-acatgttttttaactt 27224392  T
Q  404 agaaatagaaacatggaaca 423  Q
    ||||||||||||||| ||||    
T  27224393 agaaatagaaacatgcaaca 27224412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 505 - 563
Target Start/End: Original strand, 42082748 - 42082806
Alignment:
Q  505 ttttcacatttcactcaatgataagaaacactgtgaaatgacaattttaacctcaaatt 563  Q
    |||||||| |||| || ||| ||||||||||  ||||||||||| ||||||||||||||    
T  42082748 ttttcacacttcattcgatgctaagaaacaccatgaaatgacaaatttaacctcaaatt 42082806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0125 (Bit Score: 58; Significance: 6e-24; HSPs: 1)
Name: scaffold0125
Description:

Target: scaffold0125; HSP #1
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 297 - 417
Target Start/End: Original strand, 5778 - 5899
Alignment:
Q  297 aaagagcaatcttctatttgaattgaaaataacttccgtataatgatcattagccatcaaaatcaaaattagcaattattttttctaaggaacaca-ttt 395  Q
    |||||||||||||| |||| |||| |||| ||| ||| ||||||||| |||||||| | |||||||||||||||||||||||  | |||||||||| |||    
T  5778 aaagagcaatcttcaatttaaattaaaaacaacatccatataatgattattagccaccgaaatcaaaattagcaattattttgacaaaggaacacatttt 5877  T
Q  396 tttcccttagaaatagaaacat 417  Q
    |||  |||||||||||||||||    
T  5878 ttttacttagaaatagaaacat 5899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 6e-24; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 297 - 390
Target Start/End: Original strand, 29864675 - 29864768
Alignment:
Q  297 aaagagcaatcttctatttgaattgaaaataacttccgtataatgatcattagccatcaaaatcaaaattagcaattattttttctaaggaaca 390  Q
    ||||| ||||||||||||| ||||||||||||| || |||||||||| |||||||| |||||| |||||||||||||||||||  |||||||||    
T  29864675 aaagaacaatcttctatttaaattgaaaataacatcagtataatgattattagccaccaaaattaaaattagcaattatttttagtaaggaaca 29864768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 308 - 384
Target Start/End: Complemental strand, 50509869 - 50509793
Alignment:
Q  308 ttctatttgaattgaaaataacttccgtataatgatcattagccatcaaaatcaaaattagcaattattttttctaa 384  Q
    |||||||| |||||||||||||   ||||||||||| |||||||| |||||||||||||||||||||||||| ||||    
T  50509869 ttctatttaaattgaaaataacactcgtataatgattattagccaccaaaatcaaaattagcaattatttttactaa 50509793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 304 - 379
Target Start/End: Complemental strand, 9672579 - 9672504
Alignment:
Q  304 aatcttctatttgaattgaaaataacttccgtataatgatcattagccatcaaaatcaaaattagcaattattttt 379  Q
    |||||||||||| |||| ||||||||   ||||||||||| |||||||||| ||||||||||||||||||||||||    
T  9672579 aatcttctatttaaatttaaaataacactcgtataatgattattagccatcgaaatcaaaattagcaattattttt 9672504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 304 - 422
Target Start/End: Original strand, 24892022 - 24892140
Alignment:
Q  304 aatcttctatttgaattgaaaataacttccgtataatgatcattagccatcaaaatcaaaattagcaattattttttctaaggaacacattttttccctt 403  Q
    |||||||||||| |||||||||||||   ||||||||| | |||||||| ||||| |||||||| ||||||||||| |||| ||     ||||||  |||    
T  24892022 aatcttctatttaaattgaaaataacactcgtataatggttattagccaccaaaaccaaaattaacaattatttttactaaagacgtgcttttttaactt 24892121  T
Q  404 agaaatagaaacatggaac 422  Q
    |||||||||||||||||||    
T  24892122 agaaatagaaacatggaac 24892140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 496 - 594
Target Start/End: Original strand, 28190485 - 28190583
Alignment:
Q  496 gaaaattgcttttcacatttcactcaatgataagaaacactgtgaaatgacaattttaacctcaaattcaatcaatagttaaccatcgctgattaaaat 594  Q
    |||||||||||||| || ||||| ||| |  |||||||||  ||||||||||| ||||||||||||||  |||| |||||||| | ||||| |||||||    
T  28190485 gaaaattgcttttcccacttcacacaaagcaaagaaacaccatgaaatgacaagtttaacctcaaatttcatcagtagttaactaccgctggttaaaat 28190583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 497 - 679
Target Start/End: Complemental strand, 37543926 - 37543745
Alignment:
Q  497 aaaattgcttttcacatttcactcaatgataagaaacactgtgaaatgacaattttaacctcaaattcaatcaatagttaaccatcgctgattaaaatac 596  Q
    ||||||| |||||||| ||||||||||  |||| |||||| | |||||| || |||||||  |||||  ||   |||||||| |  || ||||||| | |    
T  37543926 aaaattgtttttcacacttcactcaatactaaggaacactataaaatgaaaaatttaaccctaaattttattggtagttaactactgccgattaaa-tcc 37543828  T
Q  597 atcgacagataactgtcgatggggttatattgataattttgtgatgtttcgtagcaacctttgatgtggaaatatcaattttc 679  Q
    |||| ||| ||||||| ||||||||| | ||| | |||||||| |||||| |||||||||||||| |  ||| ||||||||||    
T  37543827 atcggcagttaactgttgatggggttgtgttggtgattttgtggtgtttcatagcaacctttgatataaaaacatcaattttc 37543745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 304 - 384
Target Start/End: Original strand, 26687705 - 26687785
Alignment:
Q  304 aatcttctatttgaattgaaaataacttccgtataatgatcattagccatcaaaatcaaaattagcaattattttttctaa 384  Q
    |||||||||||| |||||||||||||   ||||||||||| |||| ||| | |||| ||||||| ||||||||||| ||||    
T  26687705 aatcttctatttaaattgaaaataacactcgtataatgattattaaccaccgaaattaaaattaacaattatttttactaa 26687785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 337 - 423
Target Start/End: Complemental strand, 50262529 - 50262444
Alignment:
Q  337 taatgatcattagccatcaaaatcaaaattagcaattattttttctaaggaacacattttttcccttagaaatagaaacatggaaca 423  Q
    ||||||| |||| ||| || |||||||||||||||||||||||| ||||| ||   ||||||  |||||||||||||||||| ||||    
T  50262529 taatgattattaaccaccataatcaaaattagcaattattttttttaagg-acgtgtttttttacttagaaatagaaacatgaaaca 50262444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 304 - 384
Target Start/End: Original strand, 23688394 - 23688474
Alignment:
Q  304 aatcttctatttgaattgaaaataacttccgtataatgatcattagccatcaaaatcaaaattagcaattattttttctaa 384  Q
    |||||||||||| |||||||||||||   |||||||| || ||| | ||  ||||||||||||| ||||||||||| ||||    
T  23688394 aatcttctatttaaattgaaaataacactcgtataataattatttgtcactaaaatcaaaattaacaattatttttactaa 23688474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 2e-21; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 297 - 390
Target Start/End: Original strand, 17535770 - 17535863
Alignment:
Q  297 aaagagcaatcttctatttgaattgaaaataacttccgtataatgatcattagccatcaaaatcaaaattagcaattattttttctaaggaaca 390  Q
    |||||| |||||| ||||| |||||||| |||| ||||||||||||  |||||||||| ||||||||||||||| |||||||| ||||||||||    
T  17535770 aaagagaaatcttttatttaaattgaaattaacatccgtataatgactattagccatcgaaatcaaaattagcagttatttttactaaggaaca 17535863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 308 - 384
Target Start/End: Complemental strand, 27246300 - 27246224
Alignment:
Q  308 ttctatttgaattgaaaataacttccgtataatgatcattagccatcaaaatcaaaattagcaattattttttctaa 384  Q
    |||||||| |||||||||||||   ||||||||||| |||||||||| ||||||||||||||||||| |||| ||||    
T  27246300 ttctatttaaattgaaaataacactcgtataatgattattagccatcgaaatcaaaattagcaattacttttactaa 27246224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 304 - 384
Target Start/End: Complemental strand, 11245471 - 11245391
Alignment:
Q  304 aatcttctatttgaattgaaaataacttccgtataatgatcattagccatcaaaatcaaaattagcaattattttttctaa 384  Q
    |||||||||||| |||||||||||||   ||||||||||| ||||||||   ||||||||||||||||||| |||| ||||    
T  11245471 aatcttctatttaaattgaaaataacactcgtataatgattattagccactgaaatcaaaattagcaattacttttactaa 11245391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 304 - 384
Target Start/End: Complemental strand, 22868123 - 22868043
Alignment:
Q  304 aatcttctatttgaattgaaaataacttccgtataatgatcattagccatcaaaatcaaaattagcaattattttttctaa 384  Q
    ||||||| |||| ||||||||| |||   ||||||||||| ||||||||   |||||| ||||||||||||||||| ||||    
T  22868123 aatcttccatttaaattgaaaaaaacactcgtataatgattattagccactgaaatcataattagcaattatttttactaa 22868043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 6e-18; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 308 - 379
Target Start/End: Complemental strand, 30707119 - 30707048
Alignment:
Q  308 ttctatttgaattgaaaataacttccgtataatgatcattagccatcaaaatcaaaattagcaattattttt 379  Q
    |||||||| |||||||||||||   ||||||||||| |||||||| ||||||||||||||||||||||||||    
T  30707119 ttctatttaaattgaaaataacactcgtataatgattattagccaccaaaatcaaaattagcaattattttt 30707048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 304 - 384
Target Start/End: Complemental strand, 26290505 - 26290425
Alignment:
Q  304 aatcttctatttgaattgaaaataacttccgtataatgatcattagccatcaaaatcaaaattagcaattattttttctaa 384  Q
    |||||||||||| |||||||||||||   ||||||||| | |||||||||| |||| ||||||||||||||||||| ||||    
T  26290505 aatcttctatttaaattgaaaataacactcgtataatggttattagccatcgaaattaaaattagcaattatttttactaa 26290425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 304 - 379
Target Start/End: Complemental strand, 2104171 - 2104096
Alignment:
Q  304 aatcttctatttgaattgaaaataacttccgtataatgatcattagccatcaaaatcaaaattagcaattattttt 379  Q
    |||||||||||| |||||||||||||    || ||||||| |||||||| ||||||||||||||||||||||||||    
T  2104171 aatcttctatttaaattgaaaataacactagtctaatgattattagccaccaaaatcaaaattagcaattattttt 2104096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 492 - 665
Target Start/End: Complemental strand, 29927883 - 29927711
Alignment:
Q  492 tgaggaaaattgcttttcacatttcactcaatgataagaaacactgtgaaatgacaattttaacctcaaattcaatcaatagttaaccatcgctgattaa 591  Q
    ||||||||||||| ||||||| ||||| ||||| ||| ||  ||  |||||||| || ||||||| ||||||  |||   ||||||| ||||  | ||||    
T  29927883 tgaggaaaattgcctttcacacttcacacaatgctaaaaattaccatgaaatgataaatttaaccccaaatttcatcgg-agttaactatcgtcggttaa 29927785  T
Q  592 aatacatcgacagataactgtcgatggggttatattgataattttgtgatgtttcgtagcaacctttgatgtgg 665  Q
    ||| ||||  ||| |||||| ||||| |||||||||| |||||| ||| |||||| || |||||||||||||||    
T  29927784 aatccatcagcagttaactgccgatgaggttatattggtaatttcgtggtgtttcctatcaacctttgatgtgg 29927711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 304 - 384
Target Start/End: Original strand, 5868993 - 5869073
Alignment:
Q  304 aatcttctatttgaattgaaaataacttccgtataatgatcattagccatcaaaatcaaaattagcaattattttttctaa 384  Q
    |||||||||||| |||||||||||||   ||||||||| | |||||||| |||||| |||||||| |||||||||| ||||    
T  5868993 aatcttctatttaaattgaaaataacactcgtataatggttattagccaccaaaattaaaattagaaattatttttactaa 5869073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 586 - 680
Target Start/End: Complemental strand, 32979063 - 32978969
Alignment:
Q  586 gattaaaatacatcgacagataactgtcgatggggttatattgataattttgtgatgtttcgtagcaacctttgatgtggaaatatcaattttct 680  Q
    ||||||||| ||||| ||| |||||  | ||| | ||||||||||||||||||| |||||| ||||||||| |||||||| || | |||||||||    
T  32979063 gattaaaattcatcggcagttaactaccaatgagtttatattgataattttgtggtgtttcctagcaacctatgatgtgggaacaacaattttct 32978969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 613 - 678
Target Start/End: Complemental strand, 3257031 - 3256966
Alignment:
Q  613 cgatggggttatattgataattttgtgatgtttcgtagcaacctttgatgtggaaatatcaatttt 678  Q
    ||||| |||||| ||| |||||||||| |||||||||||||||||| |||||| |||| |||||||    
T  3257031 cgatgaggttatgttggtaattttgtggtgtttcgtagcaacctttaatgtgggaataacaatttt 3256966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 304 - 384
Target Start/End: Original strand, 18242158 - 18242238
Alignment:
Q  304 aatcttctatttgaattgaaaataacttccgtataatgatcattagccatcaaaatcaaaattagcaattattttttctaa 384  Q
    |||||||||||| ||| |||||||||   ||||||||| | |||| ||| |||||| ||||||||||||||||||| ||||    
T  18242158 aatcttctatttaaatcgaaaataacactcgtataatggttattaaccaccaaaattaaaattagcaattatttttactaa 18242238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 620 - 679
Target Start/End: Complemental strand, 37210278 - 37210219
Alignment:
Q  620 gttatattgataattttgtgatgtttcgtagcaacctttgatgtggaaatatcaattttc 679  Q
    ||||||||| |||||| ||| |||||| |||||||||||||||||| || ||||||||||    
T  37210278 gttatattggtaatttcgtggtgtttcctagcaacctttgatgtgggaacatcaattttc 37210219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 494 - 680
Target Start/End: Complemental strand, 35426560 - 35426375
Alignment:
Q  494 aggaaaattgcttttcacatttcactcaatgataagaaacactgtgaaatgacaattttaacctcaaattcaatcaatagttaaccatcgctgattaaaa 593  Q
    ||||||||||||||||||| ||||||||||| |||||||||     ||||||||| ||||||   |||||  ||||| |||||||    |  | ||||||    
T  35426560 aggaaaattgcttttcacacttcactcaatgctaagaaacatcagaaaatgacaaatttaactctaaattttatcaacagttaactcctgtcggttaaaa 35426461  T
Q  594 tacatcgacagataactgtcgatggggttatattgataattttgtgatgtttcgtagcaacctttgatgtggaaatatcaattttct 680  Q
    | ||| ||||| ||| || ||||||| ||| |||| |||||| ||| |||||| |||||| |||| | |||| | ||||||||||||    
T  35426460 ttcattgacagttaattgccgatgggtttacattggtaatttcgtggtgtttcatagcaa-cttttacgtgggattatcaattttct 35426375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 304 - 384
Target Start/End: Original strand, 44259836 - 44259916
Alignment:
Q  304 aatcttctatttgaattgaaaataacttccgtataatgatcattagccatcaaaatcaaaattagcaattattttttctaa 384  Q
    ||||||||| || |||||||||| ||   |||||||| || ||||||||   |||||||||||||||||||||||| ||||    
T  44259836 aatcttctagttaaattgaaaattacactcgtataattattattagccactgaaatcaaaattagcaattatttttactaa 44259916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 539 - 645
Target Start/End: Original strand, 35494924 - 35495030
Alignment:
Q  539 gaaatgacaattttaacctcaaattcaatcaatagttaaccatcgctgattaaaatacatcgacagataactgtcgatggggttatattgataattttgt 638  Q
    |||||||||| ||||| ||||||||  ||| ||||||||  | |   | ||||||| ||||| ||| |||||| |||||| |||||||||||||||| ||    
T  35494924 gaaatgacaaatttaatctcaaatttcatcgatagttaattaccatcggttaaaattcatcggcagttaactgccgatggagttatattgataatttcgt 35495023  T
Q  639 gatgttt 645  Q
    | |||||    
T  35495024 ggtgttt 35495030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 2e-17; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 297 - 422
Target Start/End: Original strand, 16061457 - 16061583
Alignment:
Q  297 aaagagcaatcttctatttgaattgaaaataacttccgtataatgatcattagccatcaaaatcaaaattagcaattatttttt-ctaaggaacacattt 395  Q
    ||||| ||||||||||||| |||||||||||||    |||||||| | |||||||| | ||||||||||||||||||||||||| |||| ||     |||    
T  16061457 aaagatcaatcttctatttaaattgaaaataacacttgtataatggttattagccaccgaaatcaaaattagcaattattttttactaaagacgtgcttt 16061556  T
Q  396 tttcccttagaaatagaaacatggaac 422  Q
    |||  ||||||||||||||||||||||    
T  16061557 tttaacttagaaatagaaacatggaac 16061583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 304 - 384
Target Start/End: Complemental strand, 6132038 - 6131958
Alignment:
Q  304 aatcttctatttgaattgaaaataacttccgtataatgatcattagccatcaaaatcaaaattagcaattattttttctaa 384  Q
    |||||||||||| |||||||||||||   ||||||||||| |||||||| | |||| |||||||| |||||||||| ||||    
T  6132038 aatcttctatttaaattgaaaataacactcgtataatgattattagccaccgaaattaaaattagtaattatttttactaa 6131958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 498 - 658
Target Start/End: Original strand, 53711686 - 53711845
Alignment:
Q  498 aaattgcttttcacatttcactcaatgataagaaacactgtgaaatgacaattttaacctcaaattcaatcaatagttaaccatcgctgattaaaataca 597  Q
    |||||| |||||||| |||||||||   ||||||||||  ||||||||||| |||||||| |||||  ||   |||||||  ||||||| ||||||| ||    
T  53711686 aaattgtttttcacacttcactcaacactaagaaacaca-tgaaatgacaaatttaaccttaaatttcattgttagttaattatcgctggttaaaattca 53711784  T
Q  598 tcgacagataactgtcgatggggttatattgataattttgtgatgtttcgtagcaaccttt 658  Q
    || |||| |||||| | ||| | |||| ||| ||| |||||| |||||| |||||||||||    
T  53711785 tcaacagttaactgcccatgagattatgttggtaaatttgtggtgtttcatagcaaccttt 53711845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 496 - 663
Target Start/End: Complemental strand, 47533889 - 47533722
Alignment:
Q  496 gaaaattgcttttcacatttcactcaatgataagaaacactgtgaaatgacaattttaacctcaaattcaatcaatagttaaccatcgctgattaaaata 595  Q
    ||||||||| ||||||| ||||| ||||| ||||||||||  | |||||| || ||||||||||||||  |||  | |||||| | |||   | |||||     
T  47533889 gaaaattgcctttcacacttcacgcaatgctaagaaacacaattaaatgataaatttaacctcaaatttcatcggtcgttaactaccgccagtcaaaatt 47533790  T
Q  596 catcgacagataactgtcgatggggttatattgataattttgtgatgtttcgtagcaacctttgatgt 663  Q
    ||||| |||  |||||||||||  ||||||||| ||| |||||| |||||| || |||||||| ||||    
T  47533789 catcggcagtcaactgtcgatgaagttatattggtaaatttgtggtgtttcctaacaacctttaatgt 47533722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 495 - 564
Target Start/End: Complemental strand, 29010174 - 29010105
Alignment:
Q  495 ggaaaattgcttttcacatttcactcaatgataagaaacactgtgaaatgacaattttaacctcaaattc 564  Q
    |||||| ||||||||||| |||| |||||| ||||||||||  | ||||||||| |||||||||||||||    
T  29010174 ggaaaaatgcttttcacacttcattcaatgctaagaaacaccataaaatgacaaatttaacctcaaattc 29010105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 304 - 384
Target Start/End: Original strand, 6087060 - 6087140
Alignment:
Q  304 aatcttctatttgaattgaaaataacttccgtataatgatcattagccatcaaaatcaaaattagcaattattttttctaa 384  Q
    |||||| ||||| |||||||||||||   ||||||||| | |||||||| | |||| ||||||||||||||||||| ||||    
T  6087060 aatcttatatttaaattgaaaataacactcgtataatggttattagccaccgaaattaaaattagcaattatttttactaa 6087140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 304 - 380
Target Start/End: Complemental strand, 6166462 - 6166386
Alignment:
Q  304 aatcttctatttgaattgaaaataacttccgtataatgatcattagccatcaaaatcaaaattagcaattatttttt 380  Q
    |||||||||||| |||| ||||||||   ||||||||||| |||||||| | ||||||||||||  |||||||||||    
T  6166462 aatcttctatttaaatttaaaataacactcgtataatgattattagccaccgaaatcaaaattaaaaattatttttt 6166386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 304 - 384
Target Start/End: Original strand, 32727986 - 32728066
Alignment:
Q  304 aatcttctatttgaattgaaaataacttccgtataatgatcattagccatcaaaatcaaaattagcaattattttttctaa 384  Q
    |||||||||||| |||||||||||||   | ||||||| | |||||||| |||||| ||||||| ||||||||||| ||||    
T  32727986 aatcttctatttaaattgaaaataacactcctataatggttattagccaccaaaattaaaattaacaattatttttactaa 32728066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 304 - 374
Target Start/End: Complemental strand, 18886254 - 18886184
Alignment:
Q  304 aatcttctatttgaattgaaaataacttccgtataatgatcattagccatcaaaatcaaaattagcaatta 374  Q
    |||||||||||| |||||||||||||   ||||||||||| |||| ||| | |||| ||||||||||||||    
T  18886254 aatcttctatttaaattgaaaataacactcgtataatgattattatccaccgaaattaaaattagcaatta 18886184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 496 - 592
Target Start/End: Original strand, 22579232 - 22579328
Alignment:
Q  496 gaaaattgcttttcacatttcactcaatgataagaaacactgtgaaatgacaattttaacctcaaattcaatcaatagttaaccatcgctgattaaa 592  Q
    ||||||| ||||||| | ||||||||||| ||| ||||||| | |||||  || ||||||||||||||| ||||| ||| ||| | ||||| |||||    
T  22579232 gaaaattacttttcatacttcactcaatgctaaaaaacactataaaatggtaaatttaacctcaaattctatcaacagtgaactaccgctggttaaa 22579328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 496 - 564
Target Start/End: Complemental strand, 24894818 - 24894750
Alignment:
Q  496 gaaaattgcttttcacatttcactcaatgataagaaacactgtgaaatgacaattttaacctcaaattc 564  Q
    |||||||| ||||| || ||||| ||||| |||||||||| || |||| |||| |||||||||||||||    
T  24894818 gaaaattgtttttcccacttcacacaatgctaagaaacaccgtaaaatcacaagtttaacctcaaattc 24894750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 620 - 679
Target Start/End: Complemental strand, 24894721 - 24894662
Alignment:
Q  620 gttatattgataattttgtgatgtttcgtagcaacctttgatgtggaaatatcaattttc 679  Q
    ||||||||| |||||||||| |||||| |  ||||||||||||||| || ||||||||||    
T  24894721 gttatattggtaattttgtggtgtttcattacaacctttgatgtgggaacatcaattttc 24894662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 304 - 379
Target Start/End: Original strand, 36441099 - 36441173
Alignment:
Q  304 aatcttctatttgaattgaaaataacttccgtataatgatcattagccatcaaaatcaaaattagcaattattttt 379  Q
    |||||||||||| || ||||||||||   |||||||| || ||||||||   ||||||||||||||||||||||||    
T  36441099 aatcttctatttaaactgaaaataacactcgtataattat-attagccactgaaatcaaaattagcaattattttt 36441173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 497 - 623
Target Start/End: Original strand, 55520939 - 55521065
Alignment:
Q  497 aaaattgcttttcacatttcactcaatgataagaaacactgtgaaatgacaattttaacctcaaattcaatcaatagttaaccatcgctgattaaaatac 596  Q
    ||||||| ||||| || ||||| ||| | ||||||||||  ||||||||||| |||| || ||||||  ||||||||||||  | |||   ||||||| |    
T  55520939 aaaattgtttttcccacttcacacaaagctaagaaacaccatgaaatgacaagtttagccccaaattacatcaatagttaaataccgcaagttaaaattc 55521038  T
Q  597 atcgacagataactgtcgatggggtta 623  Q
    |||| ||| ||||| ||| ||||||||    
T  55521039 atcggcagttaactttcgttggggtta 55521065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 311 - 384
Target Start/End: Complemental strand, 38138839 - 38138766
Alignment:
Q  311 tatttgaattgaaaataacttccgtataatgatcattagccatcaaaatcaaaattagcaattattttttctaa 384  Q
    ||||| |||||||||||||   ||||||||||| |||| ||  |||||||||||| | ||||||||||| ||||    
T  38138839 tatttaaattgaaaataacactcgtataatgattattaacccccaaaatcaaaatcaacaattatttttactaa 38138766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 304 - 384
Target Start/End: Complemental strand, 54561188 - 54561108
Alignment:
Q  304 aatcttctatttgaattgaaaataacttccgtataatgatcattagccatcaaaatcaaaattagcaattattttttctaa 384  Q
    |||||||||||| |||||||||||||   | ||||||||| |||||| | ||||||||||||||||||||| |||| ||||    
T  54561188 aatcttctatttaaattgaaaataacactcatataatgattattagctaccaaaatcaaaattagcaattagttttactaa 54561108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 496 - 564
Target Start/End: Original strand, 1699932 - 1700000
Alignment:
Q  496 gaaaattgcttttcacatttcactcaatgataagaaacactgtgaaatgacaattttaacctcaaattc 564  Q
    ||||||||  ||||||| ||||| ||||| ||||||||||  |||||| |||| |||||||||||||||    
T  1699932 gaaaattgtctttcacacttcacacaatgctaagaaacaccatgaaataacaaatttaacctcaaattc 1700000  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 496 - 611
Target Start/End: Complemental strand, 40362140 - 40362025
Alignment:
Q  496 gaaaattgcttttcacatttcactcaatgataagaaacactgtgaaatgacaattttaacctcaaattcaatcaatagttaaccatcgctgattaaaata 595  Q
    ||||||||| ||||||||||||  ||||| ||||||||||  | |||||| || ||||||| ||||||  ||  ||||||||| | ||  | |||||||     
T  40362140 gaaaattgcctttcacatttcatacaatgctaagaaacaccataaaatgaaaaatttaaccccaaatttcattgatagttaactaccgtcggttaaaatc 40362041  T
Q  596 catcgacagataactg 611  Q
    ||||||||| ||||||    
T  40362040 catcgacagttaactg 40362025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 304 - 379
Target Start/End: Complemental strand, 42624843 - 42624768
Alignment:
Q  304 aatcttctatttgaattgaaaataacttccgtataatgatcattagccatcaaaatcaaaattagcaattattttt 379  Q
    |||||||||||| |||||| | ||||   ||||||||| | |||||||| | |||| |||||||||||||||||||    
T  42624843 aatcttctatttaaattgatattaacactcgtataatggttattagccaccgaaattaaaattagcaattattttt 42624768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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