View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0740_high_27 (Length: 434)
Name: NF0740_high_27
Description: NF0740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0740_high_27 |
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Alignment Details
Target: chr5 (Bit Score: 171; Significance: 1e-91; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 183 - 406
Target Start/End: Complemental strand, 803304 - 803090
Alignment:
| Q |
183 |
cggcataccattcatcctttgctacctggactggacgaatcaaagtagtggacaaatttgactgcttcttttgtacacttttctatgccgtgcattacaa |
282 |
Q |
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| T |
803304 |
cggcataccattcatcctttgctacctggac-----gaatcaaagtagtggacaaatttgactgcttcttttgtaaacttttctatgccgtgcattacaa |
803210 |
T |
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| Q |
283 |
tttgcaacaaattcaagctagactagtcattttggacaattattaattatcttcttttctatcaccaccatcaattccaatgtctttagctatgtttcta |
382 |
Q |
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| T |
803209 |
tttgcaacaaattcaagctagactagtcattttggaccatt----attatcttcttttctatcaccaccatcaattcctatgtctttagctatgtttcta |
803114 |
T |
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| Q |
383 |
ccattcattattcttgtactaatt |
406 |
Q |
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|||| ||||||||||||||||||| |
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| T |
803113 |
ccatgcattattcttgtactaatt |
803090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 8 - 182
Target Start/End: Complemental strand, 803515 - 803349
Alignment:
| Q |
8 |
gagcagagaccttaatccgaggacacttatttgaatagacacaatatataaactgaaattaattttagatatcccactctccaattgagaattaatctca |
107 |
Q |
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| T |
803515 |
gagcagacaccttaatccgaggacacttatttgaatggacacaata----aactgaaattaattttagatatcccactctccaattgag----aatctca |
803424 |
T |
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| Q |
108 |
gttcctaatgacgtagtagatctctcatatgnnnnnnnaacttgactttgtcaaatggtaaagactttgctatgc |
182 |
Q |
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| T |
803423 |
gttcctaatgacgtagtagatctctcatatgtttttttaacttgactttgtcaaatggtaaagactatgctatgc |
803349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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