View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0740_high_3 (Length: 826)

Name: NF0740_high_3
Description: NF0740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0740_high_3
NF0740_high_3
[»] chr8 (19 HSPs)
chr8 (10-481)||(17067836-17068305)
chr8 (10-481)||(17580052-17580521)
chr8 (272-783)||(29054462-29054966)
chr8 (341-783)||(17630837-17631261)
chr8 (272-783)||(21075900-21076373)
chr8 (272-783)||(20289270-20289743)
chr8 (272-693)||(10861549-10861952)
chr8 (544-783)||(17068340-17068578)
chr8 (544-783)||(17579695-17579933)
chr8 (341-783)||(34964423-34964843)
chr8 (397-481)||(17579968-17580052)
chr8 (271-362)||(10786846-10786937)
chr8 (708-783)||(10861482-10861557)
chr8 (572-717)||(3046537-3046681)
chr8 (722-782)||(3046447-3046507)
chr8 (422-476)||(3046830-3046884)
chr8 (430-480)||(44718711-44718762)
chr8 (506-560)||(3046756-3046810)
chr8 (725-775)||(44718251-44718301)
[»] scaffold0017 (1 HSPs)
scaffold0017 (277-783)||(37725-38223)
[»] chr2 (7 HSPs)
chr2 (271-783)||(14811174-14811679)
chr2 (271-783)||(14314062-14314562)
chr2 (278-337)||(27709937-27709996)
chr2 (676-720)||(13043622-13043666)
chr2 (616-677)||(29081152-29081213)
chr2 (272-337)||(32751109-32751174)
chr2 (722-782)||(13043503-13043563)
[»] chr3 (20 HSPs)
chr3 (272-783)||(39579803-39580296)
chr3 (271-783)||(4533370-4533873)
chr3 (350-782)||(958813-959237)
chr3 (346-783)||(25041311-25041742)
chr3 (272-732)||(39674088-39674529)
chr3 (272-726)||(53330421-53330860)
chr3 (272-726)||(53334105-53334544)
chr3 (272-726)||(53337782-53338221)
chr3 (423-783)||(42864321-42864669)
chr3 (674-782)||(21869148-21869256)
chr3 (564-720)||(22976519-22976673)
chr3 (272-389)||(42864250-42864368)
chr3 (272-356)||(53363115-53363199)
chr3 (721-782)||(22976432-22976493)
chr3 (277-336)||(27391352-27391411)
chr3 (423-476)||(25041308-25041361)
chr3 (507-560)||(29359793-29359846)
chr3 (687-720)||(29360014-29360047)
chr3 (739-783)||(41530363-41530407)
chr3 (721-772)||(29360074-29360125)
[»] chr6 (3 HSPs)
chr6 (271-782)||(21111998-21112490)
chr6 (272-783)||(8861950-8862433)
chr6 (272-601)||(11382414-11382737)
[»] chr7 (31 HSPs)
chr7 (271-783)||(30947455-30947962)
chr7 (272-783)||(19927928-19928419)
chr7 (350-783)||(25443577-25444001)
chr7 (272-590)||(40819769-40820069)
chr7 (621-783)||(26279619-26279781)
chr7 (620-783)||(40819605-40819768)
chr7 (272-565)||(37245166-37245443)
chr7 (272-474)||(26279779-26279982)
chr7 (616-720)||(22293075-22293179)
chr7 (616-687)||(22205102-22205173)
chr7 (616-687)||(22229566-22229637)
chr7 (561-653)||(37243003-37243094)
chr7 (616-720)||(45280984-45281088)
chr7 (272-337)||(25443519-25443584)
chr7 (272-337)||(22205404-22205469)
chr7 (272-337)||(22229270-22229335)
chr7 (424-476)||(45280729-45280781)
chr7 (721-776)||(22205004-22205059)
chr7 (721-776)||(22229680-22229735)
chr7 (422-476)||(15043301-15043355)
chr7 (722-776)||(22293205-22293259)
chr7 (422-476)||(26279858-26279912)
chr7 (422-476)||(36630392-36630446)
chr7 (422-476)||(36630251-36630305)
chr7 (422-479)||(22205352-22205409)
chr7 (422-479)||(22229330-22229387)
chr7 (722-775)||(26244664-26244717)
chr7 (678-718)||(36630746-36630786)
chr7 (341-427)||(15043269-15043356)
chr7 (506-556)||(45280804-45280854)
chr7 (738-776)||(45281169-45281207)
[»] chr4 (6 HSPs)
chr4 (366-783)||(54260130-54260528)
chr4 (272-344)||(563343-563415)
chr4 (429-475)||(26261054-26261100)
chr4 (620-670)||(26261273-26261323)
chr4 (272-309)||(54260056-54260093)
chr4 (679-720)||(26261383-26261424)
[»] chr1 (7 HSPs)
chr1 (277-780)||(46397774-46398266)
chr1 (576-720)||(33368975-33369114)
chr1 (422-480)||(23206306-23206363)
chr1 (728-782)||(33369145-33369199)
chr1 (277-337)||(29096172-29096232)
chr1 (432-476)||(33368779-33368823)
chr1 (422-468)||(29096227-29096273)
[»] chr5 (12 HSPs)
chr5 (411-783)||(8871283-8871647)
chr5 (506-783)||(13854368-13854644)
chr5 (272-685)||(36606086-36606480)
chr5 (564-717)||(6665857-6666009)
chr5 (564-720)||(32659069-32659224)
chr5 (272-427)||(6665622-6665776)
chr5 (716-783)||(36606474-36606541)
chr5 (721-777)||(6666038-6666094)
chr5 (422-475)||(6665692-6665745)
chr5 (728-783)||(32659258-32659313)
chr5 (272-321)||(8871240-8871289)
chr5 (679-720)||(30131211-30131252)
[»] scaffold0274 (2 HSPs)
scaffold0274 (277-344)||(14430-14497)
scaffold0274 (422-455)||(14409-14442)


Alignment Details
Target: chr8 (Bit Score: 390; Significance: 0; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 10 - 481
Target Start/End: Original strand, 17067836 - 17068305
Alignment:
Q  10 aacaatatcaggatctgcaaccaaaagtcagttgaactcaaaaatgctaatatataaaacgtgtatgttattaagttattgagaaatgctgagatgtgct 109  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17067836 aacattatcaggatctgcaaccaaaagtcagttgaactcaaaaatgctaatatataaaacgtgtatgttattaagttattgagaaatgctgagatgtgct 17067935  T
Q  110 ttaattgaaagcaatatgttaattaccgtaccagcaatagcagtcgagtgaaaatgtaaagctgctctttgaacatttagtacagcccgaaacttttcct 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  17067936 ttaattgaaagcaatatgttaattaccgtaccagcaatagcagtcgggtgaaaatgtaaagctgctctttgaacatttagtgcagtccgaaacttttcct 17068035  T
Q  210 gtagttgtttataaggaaggaaacattaatcaaatgatcaaattggtagtgagctattctctctctcaagccccgatactccaaaaatggtgaagtatcg 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||   | |||||||||||||||||||||||||||||||||    
T  17068036 gtagttgtttataaggaaggaaacattaatcaaatgatcaaattggtaatgagctattctct---tgaagccccgatactccaaaaatggtgaagtatcg 17068132  T
Q  310 aatctgacacgtatccgataccgatacgcctcgatgcgtcccgatacaggtatcgg-aaagtatcgggcaattaatatttannnnnnngaaaaacaatga 408  Q
     ||||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||       ||||||||||||    
T  17068133 tatctgacacgtatccgataccaatacgcctcgatacgtcccgatacaggtatcggaaaagtatcgggcaattaatatttatttttttgaaaaacaatga 17068232  T
Q  409 ccgatacgtgtcggatacgtcccgatacgcgtatcggagaagtatcgaacaattaatatttattttttgaagg 481  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  17068233 ccgatacgtgtcggatacgtcccgatacgcgtatcggagaagtatcgaacagttaatatttattttttgaagg 17068305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 10 - 481
Target Start/End: Complemental strand, 17580521 - 17580052
Alignment:
Q  10 aacaatatcaggatctgcaaccaaaagtcagttgaactcaaaaatgctaatatataaaacgtgtatgttattaagttattgagaaatgctgagatgtgct 109  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17580521 aacattatcaggatctgcaaccaaaagtcagttgaactcaaaaatgctaatatataaaacgtgtatgttattaagttattgagaaatgctgagatgtgct 17580422  T
Q  110 ttaattgaaagcaatatgttaattaccgtaccagcaatagcagtcgagtgaaaatgtaaagctgctctttgaacatttagtacagcccgaaacttttcct 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  17580421 ttaattgaaagcaatatgttaattaccgtaccagcaatagcagtcgggtgaaaatgtaaagctgctctttgaacatttagtgcagtccgaaacttttcct 17580322  T
Q  210 gtagttgtttataaggaaggaaacattaatcaaatgatcaaattggtagtgagctattctctctctcaagccccgatactccaaaaatggtgaagtatcg 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||   | |||||||||||||||||||||||||||||||||    
T  17580321 gtagttgtttataaggaaggaaacattaatcaaatgatcaaattggtaatgagctattctct---tgaagccccgatactccaaaaatggtgaagtatcg 17580225  T
Q  310 aatctgacacgtatccgataccgatacgcctcgatgcgtcccgatacaggtatcgg-aaagtatcgggcaattaatatttannnnnnngaaaaacaatga 408  Q
     ||||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||       ||||||||||||    
T  17580224 tatctgacacgtatccgataccaatacgcctcgatacgtcccgatacaggtatcggaaaagtatcgggcaattaatatttatttttttgaaaaacaatga 17580125  T
Q  409 ccgatacgtgtcggatacgtcccgatacgcgtatcggagaagtatcgaacaattaatatttattttttgaagg 481  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  17580124 ccgatacgtgtcggatacgtcccgatacgcgtatcggagaagtatcgaacagttaatatttattttttgaagg 17580052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 297; E-Value: 1e-166
Query Start/End: Original strand, 272 - 783
Target Start/End: Original strand, 29054462 - 29054966
Alignment:
Q  272 ctctcaagccccgatactccaaaaatggtgaagtatcgaatctgacacgtatccgataccgatacgcctcgatgcgtcccgatacaggtatcggaaa-gt 370  Q
    |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||| ||||||||||| ||||||||||| ||    
T  29054462 ctctcaagccccgatactccaaaaatggtgaagtatcgtatccgacacgtatccgatac-gatacgcctcgatacgtcccgatacgggtatcggaaaagt 29054560  T
Q  371 atcgggcaattaatatttannnnnnngaaaaacaatgaccgatacgtgtcggatacgtcccgatacgcgtatcggagaagtatcgaacaattaatattta 470  Q
    |||||||||||||||||||       ||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||  ||| ||||||||||    
T  29054561 atcgggcaattaatatttatttttttgaaaaacaatgactgatacgtgtcggatacgtcccgatacgcgtattggtgaagtatcagacagttaatattta 29054660  T
Q  471 ttttttgaaggnnnnnnn-tgaccgatacgtgtcgccgtgtcggatacgactaacttgtactccgacagagcttacttatactccgacacctatcaagtc 569  Q
    ||| |||||||        ||||| ||||||||||        ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||     
T  29054661 tttattgaaggaaaaaaaatgacctatacgtgtcg--------gatacgactaacttgtactccgacacagcttacttatactccaacacctatcaagtt 29054752  T
Q  570 tcgcagcgctatcaaaatcatattatctcttctaacctnnnnnnnntagggtttctcgtcaccacatagcaa--tagctattctctcttctaaccattac 667  Q
    | |||||| ||||||||||||||| |||||||||||||        ||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  29054753 tggcagcgttatcaaaatcatattgtctcttctaacctaaaaaa--tagggtttctcgtcaccacatagcaaaatagctattctctcttctaaccattac 29054850  T
Q  668 cactgattgaattctactctgtttctcttctctctaatgttatgtttcttctgctgtttgttttctatataaattagtgttaactgttaagtagtcaaca 767  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||    
T  29054851 cactgattgaattctactatgtttctcttctctctaatgttatgtttcttctgctgtttgttttcgatataaattagtgttaacggttaagtagtcaaca 29054950  T
Q  768 ttagacaaagatgttc 783  Q
    ||||||||||||||||    
T  29054951 ttagacaaagatgttc 29054966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 341 - 783
Target Start/End: Complemental strand, 17631261 - 17630837
Alignment:
Q  341 cgatgcgtcccgatacaggtatcggaaa-gtatcgggcaattaatatttannnnnnngaaaaacaatgaccgatacgtgtcggatacgtcccgatacgcg 439  Q
    |||| ||||||||||| ||||||||||| ||||| |||||||||||||||       |||||||||||||||||||||||| |||||||||||||||| |    
T  17631261 cgatacgtcccgatacgggtatcggaaaagtatcaggcaattaatatttatttttttgaaaaacaatgaccgatacgtgtcagatacgtcccgatacgtg 17631162  T
Q  440 tatcggagaagtatcgaacaattaatatttattttttgaaggnnnnnnn-tgaccgatacgtgtcgccgtgtcggatacgactaacttgtactccgacag 538  Q
    |||||||           || |||||||||||||||||||||        ||||||||||||||||        |||||||||||||||||||||||||     
T  17631161 tatcgga-----------cagttaatatttattttttgaaggaaaaaaaatgaccgatacgtgtcg--------gatacgactaacttgtactccgacac 17631081  T
Q  539 agcttacttatactccgacacctatcaagtctcgcagcgctatcaaaatcatattatctcttctaacctnnnnnnnntagggtttctcgtcaccacatag 638  Q
    |||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||        |||||||||||||||||| ||||    
T  17631080 agcttacttatactccgacacctatcaagtctggcaacgctatcaaaatcatattgtctcttctaacctaaaaaaa-tagggtttctcgtcaccaaatag 17630982  T
Q  639 caatagctattctctcttctaaccattaccactgattgaattctactctgtttctcttctctctaatgttatgtttcttctgctgtttgttttctatata 738  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |||||    
T  17630981 caatagctattctctcttctaaccattaccactgattgaattctactctgtttctcttctctctaatgttatgtttattctgctgttagttttcgatata 17630882  T
Q  739 aattagtgttaactgttaagtagtcaacattagacaaagatgttc 783  Q
    |||||||||||||||||||||||||||||||||||||| ||||||    
T  17630881 aattagtgttaactgttaagtagtcaacattagacaaatatgttc 17630837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 272 - 783
Target Start/End: Original strand, 21075900 - 21076373
Alignment:
Q  272 ctctcaagccccgatactccaaaaatggtgaagtatcgaatctgacacgtatccgataccgatacgcctcgatgcgtcccgatacaggtatcggaaa-gt 370  Q
    |||| ||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||          ||||||||| | ||||||||| ||    
T  21075900 ctctgaagccccgatactccaaaaatggtgaagtatcgtatccgacacgtatcggataccgatacg----------tcccgatacggctatcggaaaagt 21075989  T
Q  371 atcgggcaattaatatttannnnnnngaaaaacaatgaccgatacgtgtcggatacgtcccgatacgcgtatcggagaagtatcgaacaattaatattta 470  Q
    |||||||||||||||||||       |||||||||||||||                     ||||||||||||||||||||||| ||| ||||||||||    
T  21075990 atcgggcaattaatatttatttttttgaaaaacaatgaccg---------------------atacgcgtatcggagaagtatcggacagttaatattta 21076068  T
Q  471 ttttttgaaggnnnnnnn-tgaccgatacgtgtcgccgtgtcggatacgactaacttgtactccgacagagcttacttatactccgacacctatcaagtc 569  Q
    |||||||||||        ||||||||||||||||        ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  21076069 ttttttgaaggaaaaaaaatgaccgatacgtgtcg--------gatacgactaacttgtactccgacacagcttacttatactccgacacctatcaagtc 21076160  T
Q  570 tcgcagcgctatcaaaatcatattatctcttctaacctnnnnnnnntagggtttctcgtcaccacatagcaatagctattctctcttctaaccattacca 669  Q
    | |||||||||||||||||||||| ||| |||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21076161 tggcagcgctatcaaaatcatattgtcttttctaacctaaaaaaa-tagggtttctcgtcaccacatagcaatagctattctctcttctaaccattacca 21076259  T
Q  670 ctgattgaattctactctgtttctcttctctctaatgttatgtttcttctgctgtttgttttctatataaattagtgttaactgttaagtagtcaacatt 769  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||| |||||||| | ||||||    
T  21076260 ctgattgaattctactctgtttctcttctctctaatgttatgtttcttatgttgtttgttttcgatataaattagtgttaaccgttaagtaattaacatt 21076359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 215; E-Value: 1e-117
Query Start/End: Original strand, 272 - 783
Target Start/End: Original strand, 20289270 - 20289743
Alignment:
Q  272 ctctcaagccccgatactccaaaaatggtgaagtatcgaatctgacacgtatccgataccgatacgcctcgatgcgtcccgatacaggtatcggaaa-gt 370  Q
    |||| ||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||          ||||||||| | ||||||||| ||    
T  20289270 ctctgaagccccgatactccaaaaatggtgaagtatcgtatccgacacgtatcggataccgatacg----------tcccgatacggctatcggaaaagt 20289359  T
Q  371 atcgggcaattaatatttannnnnnngaaaaacaatgaccgatacgtgtcggatacgtcccgatacgcgtatcggagaagtatcgaacaattaatattta 470  Q
    |||||||||||||||||||       |||||||||||||||                     ||||||||||||||||||||||| ||| ||||||||||    
T  20289360 atcgggcaattaatatttatttttttgaaaaacaatgaccg---------------------atacgcgtatcggagaagtatcggacagttaatattta 20289438  T
Q  471 ttttttgaaggnnnnnnn-tgaccgatacgtgtcgccgtgtcggatacgactaacttgtactccgacagagcttacttatactccgacacctatcaagtc 569  Q
    |||||||||||        ||||||||||||||||        ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  20289439 ttttttgaaggaaaaaaaatgaccgatacgtgtcg--------gatacgactaacttgtactccgacacagcttacttatactccgacacctatcaagtc 20289530  T
Q  570 tcgcagcgctatcaaaatcatattatctcttctaacctnnnnnnnntagggtttctcgtcaccacatagcaatagctattctctcttctaaccattacca 669  Q
    | |||||||||||||||||||||| ||| |||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  20289531 tggcagcgctatcaaaatcatattgtcttttctaacctaaaaaaa-tagggtttctcgtcaccacatagcaatagctattctctcttctaaccattaaca 20289629  T
Q  670 ctgattgaattctactctgtttctcttctctctaatgttatgtttcttctgctgtttgttttctatataaattagtgttaactgttaagtagtcaacatt 769  Q
    || ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||| |||||||| | ||||||    
T  20289630 ctaattgaattctactctgtttctcttctctctaatgttatgtttcttatgttgtttgttttcgatataaattagtgttaaccgttaagtaattaacatt 20289729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 272 - 693
Target Start/End: Complemental strand, 10861952 - 10861549
Alignment:
Q  272 ctctcaagccccgatactccaaaaatggtgaagtatcgaatctgacacgtatccgataccgatacgcctcgatgcgtcccgatacaggtatcggaaa-gt 370  Q
    |||| ||||||||||||||||||||||||||||||||| | | ||||| ||||||||||||||||           | ||||||| ||||||||||| ||    
T  10861952 ctctgaagccccgatactccaaaaatggtgaagtatcgtaaccgacacatatccgataccgataca----------ttccgatacgggtatcggaaaagt 10861863  T
Q  371 atcgggcaattaatatttannnnnnngaaaaacaatgaccgatacgtgtcggatacgtcccgatacgcgtatcggagaagtatcgaacaattaatattta 470  Q
    || ||||||||||||||||       |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  10861862 attgggcaattaatatttatttttttgaaaaacaatgaccgatacgtgtcggatacgtgccgatacgcgtatcggagaagtatcggacaattaatattta 10861763  T
Q  471 ttttttgaaggnnnnnnntgaccgatacgtgtcgccgtgtcggatacgactaacttgtactccgacagagcttacttatactccgacacctatcaagtct 570  Q
    |||||||||||       |||||||||        |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  10861762 ttttttgaaggaaaaaaatgaccgata--------cgtgtcggatacgactaacttgtactccgacacagcttacttatactccgacacctatcaggtct 10861671  T
Q  571 cgcagcgctatcaaaatcatattatctcttctaacctnnnnnnnntagggtttctcgtcaccacatagcaatagctattctctcttctaaccattaccac 670  Q
     |||||||| ||||||||||||| |||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10861670 ggcagcgctctcaaaatcatattctctcttctaacct-aaaaatatagggtttctcgtcaccacatagcaatagctattctctcttctaaccattaccac 10861572  T
Q  671 tgattgaattctactctgtttct 693  Q
    ||||||||||||||| |||||||    
T  10861571 tgattgaattctactatgtttct 10861549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 544 - 783
Target Start/End: Original strand, 17068340 - 17068578
Alignment:
Q  544 acttatactccgacacctatcaagtctcgcagcgctatcaaaatcatattatctcttctaacctnnnnnnnntagggtttctcgtcaccacatagcaata 643  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||    
T  17068340 acttgtactccgacacctatcaagtctcgcagcgctatcaaaatcatattatctcttctaacctaaaaaaa-tagggtttctcgtcaccacatagcaata 17068438  T
Q  644 gctattctctcttctaaccattaccactgattgaattctactctgtttctcttctctctaatgttatgtttcttctgctgtttgttttctatataaatta 743  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  17068439 gctattctctcttctaaccattaccactgattgaattttactctgtttctcttctctctaatgttatgtttcttctgctgtttgttttcgatataaatta 17068538  T
Q  744 gtgttaactgttaagtagtcaacattagacaaagatgttc 783  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  17068539 gtgttaactgttaagtagtcaacattagacaaagatgttc 17068578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 544 - 783
Target Start/End: Complemental strand, 17579933 - 17579695
Alignment:
Q  544 acttatactccgacacctatcaagtctcgcagcgctatcaaaatcatattatctcttctaacctnnnnnnnntagggtttctcgtcaccacatagcaata 643  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||    
T  17579933 acttgtactccgacacctatcaagtctcgcagcgctatcaaaatcatattatctcttctaacctaaaaaaa-tagggtttctcgtcaccacatagcaata 17579835  T
Q  644 gctattctctcttctaaccattaccactgattgaattctactctgtttctcttctctctaatgttatgtttcttctgctgtttgttttctatataaatta 743  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  17579834 gctattctctcttctaaccattaccactgattgaattttactctgtttctcttctctctaatgttatgtttcttctgctgtttgttttcgatataaatta 17579735  T
Q  744 gtgttaactgttaagtagtcaacattagacaaagatgttc 783  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  17579734 gtgttaactgttaagtagtcaacattagacaaagatgttc 17579695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 341 - 783
Target Start/End: Complemental strand, 34964843 - 34964423
Alignment:
Q  341 cgatgcgtcccgatacaggtatcggaaa-gtatcgggcaattaatatttannnnnnngaaaaacaatgaccgatacgtgtcggatacgtcccgatacgcg 439  Q
    |||| ||| ||||||| ||||||||||| |||||||||||||||||||||       ||||||||||||||||||||||||||||    ||||||| |||    
T  34964843 cgatacgttccgatacgggtatcggaaaagtatcgggcaattaatatttatttttttgaaaaacaatgaccgatacgtgtcggat----cccgatatgcg 34964748  T
Q  440 tatcggagaagtatcgaacaattaatatttattttttgaaggnnnnnnn-tgaccgatacgtgtcgccgtgtcggatacgactaacttgtactccgacag 538  Q
    |||||||||||||||| |   |||||||||||||||||||||        ||||||||| ||||||        |||||||||||||||||||||||||     
T  34964747 tatcggagaagtatcggatggttaatatttattttttgaaggaaaaaaaatgaccgatatgtgtcg--------gatacgactaacttgtactccgacac 34964656  T
Q  539 agcttacttatactccgacacctatcaagtctcgcagcgctatcaaaatcatattatctcttctaacctnnnnnnnntagggtttctcgtcaccacatag 638  Q
    |||||||||||||||||||||||||||||| | |||||||||||||           ||||||||||||        ||||||||||||||||| |||||    
T  34964655 agcttacttatactccgacacctatcaagtttggcagcgctatcaa-----------ctcttctaacctaaaaaaa-tagggtttctcgtcaccgcatag 34964568  T
Q  639 caatagctattctctcttctaaccattaccactgattgaattctactctgtttctcttctctctaatgttatgtttcttctgctgtttgttttctatata 738  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| || ||    
T  34964567 caatagctattctctcttctaaccattacctttgattgaattctactatgtttctcttctctctaatgttatgtttattctgctgtttgttttcgatgta 34964468  T
Q  739 aattagtgttaactgttaagtagtcaacattagacaaagatgttc 783  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  34964467 aattagtgttaactgttaagtagtcaacattagacaaagatgttc 34964423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 397 - 481
Target Start/End: Complemental strand, 17580052 - 17579968
Alignment:
Q  397 gaaaaacaatgaccgatacgtgtcggatacgtcccgatacgcgtatcggagaagtatcgaacaattaatatttattttttgaagg 481  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  17580052 gaaaaaaaatgaccgatacgtgtcggatacgtcccgatacgcgtatcggagaagtatcgaacagttaatatttattttttgaagg 17579968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 271 - 362
Target Start/End: Complemental strand, 10786937 - 10786846
Alignment:
Q  271 tctctcaagccccgatactccaaaaatggtgaagtatcgaatctgacacgtatccgataccgatacgcctcgatgcgtcccgatacaggtat 362  Q
    ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||| | || |||||||||||||||||    
T  10786937 tctctcaagccccgatactccaaaaatggtgaagtatcgtatccgacacgtatccgataccgagacgccccaatacgtcccgatacaggtat 10786846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 708 - 783
Target Start/End: Complemental strand, 10861557 - 10861482
Alignment:
Q  708 tatgtttcttctgctgtttgttttctatataaattagtgttaactgttaagtagtcaacattagacaaagatgttc 783  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  10861557 tatgtttcttctgctgtttgttttcgatataaattagtgttaactattaagtagtcaacattagacaaagatgttc 10861482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 572 - 717
Target Start/End: Complemental strand, 3046681 - 3046537
Alignment:
Q  572 gcagcgctatcaaaatcatattatctcttctaacctnnnnnnnntagggtttctcgtcaccacatagcaatagctattctctcttctaaccattaccact 671  Q
    ||||||||||||||| |||||| ||||||||||||         |||||||||||||||||||||| | ||| |||||| |||||||||||||||||||     
T  3046681 gcagcgctatcaaaaacatattgtctcttctaacc-caaaaaaatagggtttctcgtcaccacataacgataactattccctcttctaaccattaccacc 3046583  T
Q  672 gattgaattctactctgtttctcttctctctaatgttatgtttctt 717  Q
     ||||||||||||| ||||||||||  ||||||||  |||||||||    
T  3046582 aattgaattctactatgtttctctttgctctaatgccatgtttctt 3046537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 722 - 782
Target Start/End: Complemental strand, 3046507 - 3046447
Alignment:
Q  722 tgtttgttttctatataaattagtgttaactgttaagtagtcaacattagacaaagatgtt 782  Q
    ||||||||||  ||||||||||||||||| | |||||||||||||||||||||||| ||||    
T  3046507 tgtttgtttttgatataaattagtgttaaatattaagtagtcaacattagacaaaggtgtt 3046447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 422 - 476
Target Start/End: Complemental strand, 3046884 - 3046830
Alignment:
Q  422 gatacgtcccgatacgcgtatcggagaagtatcgaacaattaatatttatttttt 476  Q
    |||||||||||||||| ||||||||||||||| |  |||||||||||||||||||    
T  3046884 gatacgtcccgatacgtgtatcggagaagtattgggcaattaatatttatttttt 3046830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 430 - 480
Target Start/End: Complemental strand, 44718762 - 44718711
Alignment:
Q  430 ccgatacgcgtatcggagaagtatcgaacaattaatatttat-tttttgaag 480  Q
    |||||| |||||||||||||||||||| | |||||||||||| |||||||||    
T  44718762 ccgatatgcgtatcggagaagtatcgatcgattaatatttatctttttgaag 44718711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 506 - 560
Target Start/End: Complemental strand, 3046810 - 3046756
Alignment:
Q  506 cgtgtcggatacgactaacttgtactccgacagagcttacttatactccgacacc 560  Q
    |||||| |||||  |||||||||||||||||| |||| | |||||||||||||||    
T  3046810 cgtgtctgatacagctaacttgtactccgacacagctaatttatactccgacacc 3046756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 725 - 775
Target Start/End: Complemental strand, 44718301 - 44718251
Alignment:
Q  725 ttgttttctatataaattagtgttaactgttaagtagtcaacattagacaa 775  Q
    |||||||| || | || ||||||||||| ||||||||||||||||||||||    
T  44718301 ttgttttcaatttcaaatagtgttaactattaagtagtcaacattagacaa 44718251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 312; Significance: 1e-175; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 277 - 783
Target Start/End: Complemental strand, 38223 - 37725
Alignment:
Q  277 aagccccgatactccaaaaatggtgaagtatcgaatctgacacgtatccgataccgatacgcctcgatgcgtcccgatacaggtatcggaaa-gtatcgg 375  Q
    |||||||||||||||||||||| |||||||||| ||| |||||||||| |||||||||||||| |||| ||||||||||| |||||| |||| |||||||    
T  38223 aagccccgatactccaaaaatgatgaagtatcgtatccgacacgtatctgataccgatacgccccgatacgtcccgatacgggtatcagaaaagtatcgg 38124  T
Q  376 gcaattaatatttannnnnnngaaaaacaatgaccgatacgtgtcggatacgtcccgatacgcgtatcggagaagtatcgaacaattaatatttattttt 475  Q
    ||||||||||||||        |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||    
T  38123 gcaattaatatttatttcttaaaaaaacaatgaccgatacgtgtcggatacgtcccaatacgcgtatcggagaagtatcggacagttaatatttattttt 38024  T
Q  476 tgaaggnnnnnnntgaccgatacgtgtcgccgtgtcggatacgactaacttgtactccgacagagcttacttatactccgacacctatcaagtctcgcag 575  Q
    ||||||       ||||||||||||||||        ||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||| ||||    
T  38023 tgaaggaaaaaaatgaccgatacgtgtcg--------gatacgactaacttgtactccaacacagcttacttatactccgacacttatcaagtctggcag 37932  T
Q  576 cgctatcaaaatcatattatctcttctaacctnnnnnnnntagggtttctcgtcaccacatagcaatagctattctctcttctaaccattaccactgatt 675  Q
    |||||||||||||||||| |||||| ||||||        |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  37931 cgctatcaaaatcatattgtctcttttaacctaaaaaaa-tagggtttctcgtcaccacatagcaatagctattttctcttctaaccattaccgctgatt 37833  T
Q  676 gaattctactctgtttctcttctctctaatgttatgtttcttctgctgtttgttttctatataaattagtgttaactgttaagtagtcaacattagacaa 775  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||    
T  37832 gaattctactctgtttctcttctctctaatgttatgtttcttctgctgtttgttttcgatataaatttgtgttaactgttaagtagtcaacattagacaa 37733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 307; Significance: 1e-172; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 271 - 783
Target Start/End: Original strand, 14811174 - 14811679
Alignment:
Q  271 tctctcaagccccgatactccaaaaatggtgaagtatcgaatctgacacgtatccgataccgatacgcctcgatgcgtcccgatacaggtatcggaaa-g 369  Q
    ||||| ||||||||| ||| ||||||||||||||||||| ||| ||||||||||||||||||||||||| |||| |||||||||||  |||||||||| |    
T  14811174 tctctgaagccccgacacttcaaaaatggtgaagtatcgtatccgacacgtatccgataccgatacgccccgatacgtcccgatacgcgtatcggaaaag 14811273  T
Q  370 tatcgggcaattaatatttannnnnnngaaaaacaatgaccgatacgtgtcggatacgtcccgatacgcgtatcggagaagtatcgaacaattaatattt 469  Q
    ||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||    
T  14811274 tatcgggcaattaatatttatttttttgaaaaacaatgaccgatacgtgtcggatacgtcccgatacgtgtatcggagaaatatcggacaattaatattt 14811373  T
Q  470 attttttgaaggnnnnnnn-tgaccgatacgtgtcgccgtgtcggatacgactaacttgtactccgacagagcttacttatactccgacacctatcaagt 568  Q
    ||||||||||||        ||||||||||||||||        ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  14811374 attttttgaaggaaaaaaaatgaccgatacgtgtcg--------gatacgactaacttgtactccgacacagcttacttatactccgacacctattaagt 14811465  T
Q  569 ctcgcagcgctatcaaaatcatattatctcttctaacctnnnnnnnntagggtttctcgtcaccacatagcaatagctattctctcttctaaccattacc 668  Q
    || ||||| |||| ||||||||||| |||||||||||||        |||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  14811466 ctggcagcactattaaaatcatattgtctcttctaacctaaaaaaa-taggatttctcgtcaccacatagcaatagctattctctcttctaaccattacc 14811564  T
Q  669 actgattgaattctactctgtttctcttctctctaatgttatgtttcttctgctgtttgttttctatataaattagtgttaactgttaagtagtcaacat 768  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||  ||||||||||| |||||||||||||||||||||||||||||||||||    
T  14811565 actgattgaattctactctatttctcttctctctaatgttatgtttcttctattgtttgttttcgatataaattagtgttaactgttaagtagtcaacat 14811664  T
Q  769 tagacaaagatgttc 783  Q
    |||||||||||||||    
T  14811665 tagacaaagatgttc 14811679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 271 - 783
Target Start/End: Complemental strand, 14314562 - 14314062
Alignment:
Q  271 tctctcaagccccgatactccaaaaatggtgaagtatcgaatctgacacgtatccgataccgatacgcctcgatgcgtcccgatacaggtatcggaaa-g 369  Q
    ||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||| |||||||||||  |||||||||| |    
T  14314562 tctctaaagccccgatactccaaaaatggtgaagtatcgtatccgacacgtatccgataccgatacgccccgatacgtcccgatacgcgtatcggaaaag 14314463  T
Q  370 tatcgggcaattaatatttannnnnnngaaaaacaatgaccgatacgtgtcggatacgtcccgatacgcgtatcggagaagtatcgaacaattaatattt 469  Q
    ||||||||||||||||||||       |||||||||||||||||||||||||||||||          ||||||||||||||||||  ||||||||||||    
T  14314462 tatcgggcaattaatatttatttttttgaaaaacaatgaccgatacgtgtcggatacg----------cgtatcggagaagtatcgggcaattaatattt 14314373  T
Q  470 attttttgaaggnnnnnnntgaccgatacgtgtcgccgtgtcggatacgactaacttgtactccgacagagcttacttatactccgacacctatcaagtc 569  Q
    ||||||||||||       ||||||||||||||||        ||||||||||||||| ||||||||| |||||||||||||||| ||||||||||||||    
T  14314372 attttttgaaggaaaaaaatgaccgatacgtgtcg--------gatacgactaacttgcactccgacacagcttacttatactccaacacctatcaagtc 14314281  T
Q  570 tcgcagcgctatcaaaatcatattatctcttctaacctnnnnnnnntagggtttctcgtcaccacatagcaatagc-------tattctctcttctaacc 662  Q
    | || ||||||||||||||||||| |||||||||||||        ||||||||||||||||||||||||||||||       |||||||||||||||||    
T  14314280 tggctgcgctatcaaaatcatattgtctcttctaacctaaaaaaa-tagggtttctcgtcaccacatagcaatagccaatagttattctctcttctaacc 14314182  T
Q  663 attaccactgattgaattctactctgtttctcttctctctaatgttatgtttcttctgctgtttgttttctatataaattagtgttaactgttaagtagt 762  Q
    ||||||  ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||    
T  14314181 attaccggtgattgaattctactttgtttctcttctctctaatgttatgtttctt-tgctgtttgttttcgatataaattagtgttaactgttaagtagt 14314083  T
Q  763 caacattagacaaagatgttc 783  Q
    |||||||||||||| ||||||    
T  14314082 caacattagacaaaaatgttc 14314062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 278 - 337
Target Start/End: Complemental strand, 27709996 - 27709937
Alignment:
Q  278 agccccgatactccaaaaatggtgaagtatcgaatctgacacgtatccgataccgatacg 337  Q
    ||||||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||    
T  27709996 agccccgatactccaaaaatggtgaagaatcgtgtctgacacgtatccgataccgatacg 27709937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 676 - 720
Target Start/End: Complemental strand, 13043666 - 13043622
Alignment:
Q  676 gaattctactctgtttctcttctctctaatgttatgtttcttctg 720  Q
    |||||||||| ||||||||||||||||||||||||||||||||||    
T  13043666 gaattctactatgtttctcttctctctaatgttatgtttcttctg 13043622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 616 - 677
Target Start/End: Original strand, 29081152 - 29081213
Alignment:
Q  616 tagggtttctcgtcaccacatagcaatagctattctctcttctaaccattaccactgattga 677  Q
    ||||||| |||||||||||  |||||||| ||||| ||||||||||||||||||| ||||||    
T  29081152 tagggttcctcgtcaccaccgagcaatagttattccctcttctaaccattaccaccgattga 29081213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 272 - 337
Target Start/End: Complemental strand, 32751174 - 32751109
Alignment:
Q  272 ctctcaagccccgatactccaaaaatggtgaagtatcgaatctgacacgtatccgataccgatacg 337  Q
    |||| |||| ||||||||||||||||||||||| ||   ||| |||||||||||||||||||||||    
T  32751174 ctctgaagctccgatactccaaaaatggtgaagaattatatccgacacgtatccgataccgatacg 32751109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 722 - 782
Target Start/End: Complemental strand, 13043563 - 13043503
Alignment:
Q  722 tgtttgttttctatataaattagtgttaactgttaagtagtcaacattagacaaagatgtt 782  Q
    ||||||||||| || | |||||||||||| | |||||| ||||||||||||||| ||||||    
T  13043563 tgtttgttttcaatctcaattagtgttaagtattaagtggtcaacattagacaatgatgtt 13043503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 272 - 783
Target Start/End: Original strand, 39579803 - 39580296
Alignment:
Q  272 ctctcaagccccgatactccaaaaatggtgaagtatcgaatctgacacgtatccgataccgatacgcctcgatgcgtcccgatacaggtatcggaaa-gt 370  Q
    |||| ||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||          ||||||||| ||||||||||| ||    
T  39579803 ctctgaagccccgatactccaaaaatggtgaagtatcgtatctgacacgtatctgatactgatacg----------tcccgatacgggtatcggaaaagt 39579892  T
Q  371 atcgggcaattaatatttannnnnnngaaaaacaatgaccgatacgtgtcggatacgtcccgatacgcgtatcggagaagtatcgaacaattaatattta 470  Q
    |||||||||||||||||||       |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||    
T  39579893 atcgggcaattaatatttatttttttgaaaaacaatgaccaatacgtgtcggatacgtcccgatatgcgtatcggagaagtatcggacaattaatattta 39579992  T
Q  471 ttttttgaaggnnnnnnntgaccgatacgtgtcgccgtgtcggatacgactaacttgtactccgacagagcttacttatactccgacacctatcaagtct 570  Q
    ||||||||| |       ||||||||||||||||        |||||||||||||||||||||| || |||||||||||||||||||||||||||| |||    
T  39579993 ttttttgaaagaaaaaaatgaccgatacgtgtcg--------gatacgactaacttgtactccggcacagcttacttatactccgacacctatcaactct 39580084  T
Q  571 cgcagcgctatcaaaatcatattatctcttctaacctnnnnnnnntagggtttctcgtcaccacatagcaatagctattctctcttctaaccattaccac 670  Q
     |||||||||||||||||||| | |||||||||||||        |||||||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  39580085 ggcagcgctatcaaaatcataatgtctcttctaacctaaaaaaa-tagggtttctcgtcaccacatagcaatagctattctctctaccaaccattaccac 39580183  T
Q  671 tgattgaattctactctgtttctcttctctctaatgttatgtttcttctgctgtttgttttctatataaattagtgttaactgttaagtagtcaacatta 770  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  39580184 tgattgaattctactttgtttctcttctctctaatgttatgtttcttctgctgtttgttttcgatataaattagtgttaactgttaagtagtcaacatta 39580283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 271 - 783
Target Start/End: Original strand, 4533370 - 4533873
Alignment:
Q  271 tctctcaagccccgatactccaaaaatggtgaagtatcgaatctgacacgtatccgataccgatacgcctcgatgcgtcccgatacaggtatcggaaa-g 369  Q
    ||||| ||||| ||||||| | ||||||||||||||||| ||| |||||||||| |||||||||||||  |||| ||| ||||||| ||||||||||| |    
T  4533370 tctctgaagccgcgatacttcgaaaatggtgaagtatcgtatccgacacgtatctgataccgatacgctccgatacgttccgatacgggtatcggaaaag 4533469  T
Q  370 tatcgggcaattaatatttannnnnnngaaaaacaatgaccgatacgtgtcggatacgtcccgatacgcgtatcggagaagtatcgaacaattaatattt 469  Q
    ||||||||||||||||||||       |||||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||  ||||||| |||||    
T  4533470 tatcgggcaattaatatttatttttttgaaaaacaatgaccgatatgtgtcggatacgttccgatacgcgtatcg-agaagtatcagacaattattattt 4533568  T
Q  470 attttttgaaggnnnnnnntgaccgatacgtgtcgccgtgtcggatacgactaacttgtactccgacagagcttacttatactccgacacctatcaagtc 569  Q
    ||||||||||||       ||||||||||| |||         ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||     
T  4533569 attttttgaaggaaaaaaatgaccgatacgcgtca--------gatacgactaacttgtactccgacacagcttacttatactccgacacctatcaagtt 4533660  T
Q  570 tcgcagcgctatcaaaatcatattatctcttctaacctnnnnnnnntagggtttctcgtcaccacatagcaatagctattctctcttctaaccattacca 669  Q
    | ||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  4533661 tggcagcgctatcaaaatcatattatctcttctaacctaaaataa-tagggtttctcgtcaccacataacaatagctattctctcttctaaccattacca 4533759  T
Q  670 ctgattgaattctactctgtttctcttctctctaatgttatgtttcttctgctgtttgttttctatataaattagtgttaactgttaagtagtcaacatt 769  Q
    || ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||| |||||||||||    
T  4533760 cttattgaattctactctgtttctcttctctctaatgttatgtttcttttgctgtttgttttcgatataaattattgttaactgttaattagtcaacatt 4533859  T
Q  770 agacaaagatgttc 783  Q
    ||||||||||||||    
T  4533860 agacaaagatgttc 4533873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 350 - 782
Target Start/End: Original strand, 958813 - 959237
Alignment:
Q  350 ccgatacaggtatcggaaa-gtatcgggcaattaatatttannnnnnngaaaaacaatgaccgatacgtgtcggatacgtcccgatacgcgtatcggaga 448  Q
    ||||||| ||||||||||| |||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  958813 ccgatacgggtatcggaaaagtatcgggcaattaatatttatatttttgaaaaacaatgaccgatacgtgtcggatacgtcccgatacgcgtatcggaga 958912  T
Q  449 agtatcgaacaattaatatttattttttgaaggnnnnnnntgaccgatacgtgtcgccgtgtcggatacgactaacttgtactccgacagagcttactta 548  Q
    |||||| |||| |||||||||||||||||||||       |||| |||||||||||        ||||||||||||||||||||||||| ||||||||||    
T  958913 agtatcaaacatttaatatttattttttgaaggaaaaaaatgactgatacgtgtcg--------gatacgactaacttgtactccgacacagcttactta 959004  T
Q  549 tactccgacacctatcaagtctcgcagcgctatcaaaatcatattatctcttctaacctnnnnnnnntagggtttctcgtcaccacatagcaatagctat 648  Q
    ||||| |||||||||||||||| |||||||||||||||||||||| |||||||||||||        ||||||||||||||||||||||| |||||||||    
T  959005 tactctgacacctatcaagtctggcagcgctatcaaaatcatattgtctcttctaacctaaaaaaa-tagggtttctcgtcaccacatagaaatagctat 959103  T
Q  649 tctctcttctaaccattaccactgattgaattctactctgtttctcttctctctaatgttatgtttcttctgctgtttgttttctatataaattagtgtt 748  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |    
T  959104 tctctcttctaaccattaccactgattgaattctactctgtttctcttctctctaatgttatgtttcttctgctgtttgttttcgatataaattagtgat 959203  T
Q  749 aactgttaagtagtcaacattagacaaagatgtt 782  Q
    ||| ||||||||||||||||||||||||||||||    
T  959204 aaccgttaagtagtcaacattagacaaagatgtt 959237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 346 - 783
Target Start/End: Original strand, 25041311 - 25041742
Alignment:
Q  346 cgtcccgatacaggtatcggaaa-gtatcgggcaattaatatttannnnnnngaaaaacaatgaccgatacgtgtcggatacgtcccgatacgcgtatcg 444  Q
    |||||||||||  ||||| |||| |||||| ||||||||||||||       ||||||||||||||||||||||||||||||||||| |||||||||| |    
T  25041311 cgtcccgatacgagtatcagaaaagtatcgcgcaattaatatttatttttttgaaaaacaatgaccgatacgtgtcggatacgtcccaatacgcgtattg 25041410  T
Q  445 gagaagtatcgaacaattaatatttattttttgaaggnnnnnnn-tgaccgatacgtgtcgccgtgtcggatacgactaacttgtactccgacagagctt 543  Q
    ||||||||||| ||||||||||||||||||||||||         |||| |||||||||||        ||||||||||||||||||||||||| |||||    
T  25041411 gagaagtatcggacaattaatatttattttttgaagtaaataaaatgactgatacgtgtcg--------gatacgactaacttgtactccgacacagctt 25041502  T
Q  544 acttatactccgacacctatcaagtctcgcagcgctatcaaaatcatattatctcttctaacctnnnnnnnntagggtttctcgtcaccacatagcaata 643  Q
    ||||||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||        ||||||||||||||||||||||||||||    
T  25041503 acttatactccgacacctatcaagtctggctgcgctatcaaaatcatattgtctcttctaacctaaaaaaaatagggtttctcgtcaccacatagcaata 25041602  T
Q  644 gctattctctcttctaaccattaccactgattgaattctactctgtttctcttctctctaatgttatgtttcttctgctgtttgttttctatataaatta 743  Q
    |||||||||| || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  25041603 gctattctcttttttaaccattaccactgattaaattctactctgtttctcttctctctaatgttatgtttcttctgctgtttgttttcgatataaatta 25041702  T
Q  744 gtgttaactgttaagtagtcaacattagacaaagatgttc 783  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  25041703 gtgttaactgttaagtagtcaacattagacaaagatgttc 25041742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 272 - 732
Target Start/End: Original strand, 39674088 - 39674529
Alignment:
Q  272 ctctcaagccccgatactccaaaaatggtgaagtatcgaatctgacacgtatccgataccgatacgcctcgatgcgtcccgatacaggtatcggaaa-gt 370  Q
    |||| ||||||||||||| ||||||||||||||||||| ||| ||||||||| ||||||||||| |          ||||||||| |||||| |||| ||    
T  39674088 ctctgaagccccgatacttcaaaaatggtgaagtatcgtatccgacacgtattcgataccgatatg----------tcccgatacgggtatcagaaaagt 39674177  T
Q  371 atcgggcaattaatatttannnnnnngaaaaacaatgaccgatacgtgtcggatacgtcccgatacgcgtatcggagaagtatcgaacaattaatattta 470  Q
    |||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||| ||||||||||    
T  39674178 atcgggcaattaatatttatttttttaaaaaacaatgaccgatacgtgtcggatacgtcccgatacgcgtatcgcaaaagtatcggacagttaatattta 39674277  T
Q  471 ttttttgaaggnnnnnnnt-gaccgatacgtgtcgccgtgtcggatacgactaacttgtactccgacagagcttacttatactccgacacctatcaagtc 569  Q
    |||||||||||         |||||||||||||||        ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  39674278 ttttttgaaggaaaaaaaaagaccgatacgtgtcg--------gatacgactaacttgtactccgacacaacttacttatactccgacacctatcaagtc 39674369  T
Q  570 tcgcagcgctatcaaaatcatattatctcttctaacctnnnnnnnntagggtttctcgtcaccacatagcaatagctattctctcttctaaccattacca 669  Q
    |  ||||||||||||||||||||| |||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  39674370 tgacagcgctatcaaaatcatattgtctcttctaacctaaaaaaa-tagggtttctcgtcaccacatagcaatagctattctctcttcta--cattacca 39674466  T
Q  670 ctgattgaattctactctgtttctcttctctctaatgttatgtttcttctgctgtttgttttc 732  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  39674467 ctgattgaattctactccgtttctcttctctctaatgttatgtttcttctgctgtttgttttc 39674529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 200; E-Value: 1e-108
Query Start/End: Original strand, 272 - 726
Target Start/End: Complemental strand, 53330860 - 53330421
Alignment:
Q  272 ctctcaagccccgatactccaaaaatggtgaagtatcgaatctgacacgtatccgataccgatacgcctcgatgcgtcccgatacaggtatcggaaa-gt 370  Q
    |||| ||||||||||||||||||||||||||||||||| ||| |||| ||||| ||||||||||||||||||| ||           |||||||||| ||    
T  53330860 ctctgaagccccgatactccaaaaatggtgaagtatcgtatccgacatgtatctgataccgatacgcctcgatacgc----------gtatcggaaaagt 53330771  T
Q  371 atcgggcaattaatatttannnnnnngaaaaacaatgaccgatacgtgtcggatacgtcccgatacgcgtatcggagaagtatcgaacaattaatattta 470  Q
    ||||| |||||||||||||       |||||||||||||| |||||||||| ||||||||||||||||||||| || ||| ||||  || ||||||||||    
T  53330770 atcggacaattaatatttatttttttgaaaaacaatgaccaatacgtgtcgaatacgtcccgatacgcgtatcagaaaagcatcgggcagttaatattta 53330671  T
Q  471 ttttttgaaggnnnnnnn-tgaccgatacgtgtcgccgtgtcggatacgactaacttgtactccgacagagcttacttatactccgacacctatcaagtc 569  Q
    |||||||||||        || |||||||||||||        ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  53330670 ttttttgaaggaaaaaaaatgtccgatacgtgtcg--------gatacgactaacttgtactccgacacagcttacttatactcggacacctatcaagtc 53330579  T
Q  570 tcgcagcgctatcaaaatcatattatctcttctaacctnnnnnnnn-tagggtttctcgtcaccacatagcaatagctattctctcttctaaccattacc 668  Q
    | | ||||||| |||||||||||| |||||||||||           ||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  53330578 tggaagcgctaccaaaatcatattgtctcttctaacaaaaaaaaaaatagggtttctcgtcaccacatagcaatagctattctctcttctaaccattatc 53330479  T
Q  669 actgattgaattctactctgtttctcttctctctaatgttatgtttcttctgctgttt 726  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53330478 actgattgaattctactctgtttctcttctctctaatgttatgtttcttctgctgttt 53330421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 200; E-Value: 1e-108
Query Start/End: Original strand, 272 - 726
Target Start/End: Complemental strand, 53334544 - 53334105
Alignment:
Q  272 ctctcaagccccgatactccaaaaatggtgaagtatcgaatctgacacgtatccgataccgatacgcctcgatgcgtcccgatacaggtatcggaaa-gt 370  Q
    |||| ||||||||||||||||||||||||||||||||| ||| |||| ||||| ||||||||||||||||||| ||           |||||||||| ||    
T  53334544 ctctgaagccccgatactccaaaaatggtgaagtatcgtatccgacatgtatctgataccgatacgcctcgatacgc----------gtatcggaaaagt 53334455  T
Q  371 atcgggcaattaatatttannnnnnngaaaaacaatgaccgatacgtgtcggatacgtcccgatacgcgtatcggagaagtatcgaacaattaatattta 470  Q
    ||||| |||||||||||||       |||||||||||||| |||||||||| ||||||||||||||||||||| || ||| ||||  || ||||||||||    
T  53334454 atcggacaattaatatttatttttttgaaaaacaatgaccaatacgtgtcgaatacgtcccgatacgcgtatcagaaaagcatcgggcagttaatattta 53334355  T
Q  471 ttttttgaaggnnnnnnn-tgaccgatacgtgtcgccgtgtcggatacgactaacttgtactccgacagagcttacttatactccgacacctatcaagtc 569  Q
    |||||||||||        || |||||||||||||        ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  53334354 ttttttgaaggaaaaaaaatgtccgatacgtgtcg--------gatacgactaacttgtactccgacacagcttacttatactcggacacctatcaagtc 53334263  T
Q  570 tcgcagcgctatcaaaatcatattatctcttctaacctnnnnnnnn-tagggtttctcgtcaccacatagcaatagctattctctcttctaaccattacc 668  Q
    | | ||||||| |||||||||||| |||||||||||           ||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  53334262 tggaagcgctaccaaaatcatattgtctcttctaacaaaaaaaaaaatagggtttctcgtcaccacatagcaatagctattctctcttctaaccattatc 53334163  T
Q  669 actgattgaattctactctgtttctcttctctctaatgttatgtttcttctgctgttt 726  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53334162 actgattgaattctactctgtttctcttctctctaatgttatgtttcttctgctgttt 53334105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 200; E-Value: 1e-108
Query Start/End: Original strand, 272 - 726
Target Start/End: Complemental strand, 53338221 - 53337782
Alignment:
Q  272 ctctcaagccccgatactccaaaaatggtgaagtatcgaatctgacacgtatccgataccgatacgcctcgatgcgtcccgatacaggtatcggaaa-gt 370  Q
    |||| ||||||||||||||||||||||||||||||||| ||| |||| ||||| ||||||||||||||||||| ||           |||||||||| ||    
T  53338221 ctctgaagccccgatactccaaaaatggtgaagtatcgtatccgacatgtatctgataccgatacgcctcgatacgc----------gtatcggaaaagt 53338132  T
Q  371 atcgggcaattaatatttannnnnnngaaaaacaatgaccgatacgtgtcggatacgtcccgatacgcgtatcggagaagtatcgaacaattaatattta 470  Q
    ||||| |||||||||||||       |||||||||||||| |||||||||| ||||||||||||||||||||| || ||| ||||  || ||||||||||    
T  53338131 atcggacaattaatatttatttttttgaaaaacaatgaccaatacgtgtcgaatacgtcccgatacgcgtatcagaaaagcatcgggcagttaatattta 53338032  T
Q  471 ttttttgaaggnnnnnnn-tgaccgatacgtgtcgccgtgtcggatacgactaacttgtactccgacagagcttacttatactccgacacctatcaagtc 569  Q
    |||||||||||        || |||||||||||||        ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  53338031 ttttttgaaggaaaaaaaatgtccgatacgtgtcg--------gatacgactaacttgtactccgacacagcttacttatactcggacacctatcaagtc 53337940  T
Q  570 tcgcagcgctatcaaaatcatattatctcttctaacctnnnnnnnn-tagggtttctcgtcaccacatagcaatagctattctctcttctaaccattacc 668  Q
    | | ||||||| |||||||||||| |||||||||||           ||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  53337939 tggaagcgctaccaaaatcatattgtctcttctaacaaaaaaaaaaatagggtttctcgtcaccacatagcaatagctattctctcttctaaccattatc 53337840  T
Q  669 actgattgaattctactctgtttctcttctctctaatgttatgtttcttctgctgttt 726  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53337839 actgattgaattctactctgtttctcttctctctaatgttatgtttcttctgctgttt 53337782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 423 - 783
Target Start/End: Original strand, 42864321 - 42864669
Alignment:
Q  423 atacgtcccgatacgcgtatcggagaagtatcgaacaattaatatttattttttgaaggnnnnnnn-tgaccgatacgtgtcgccgtgtcggatacgact 521  Q
    ||||||||||| ||  ||||||||||||||||| ||| |||||||||||||||||||||        |||||||||| |||||        |||||||||    
T  42864321 atacgtcccgacacttgtatcggagaagtatcggacagttaatatttattttttgaaggaaaaaaaatgaccgatacatgtcg--------gatacgact 42864412  T
Q  522 aacttgtactccgacagagcttacttatactccgacacctatcaagtctcgcagcgctatcaaaatcatattatctcttctaacctnnnnnnnntagggt 621  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||        ||||||    
T  42864413 aacttgtactccgacacagcttacttatactccgacacctatcaagtctggcagcgctatcaaaatcatattgtctcttctaacctaaaaaaa-tagggt 42864511  T
Q  622 ttctcgtcaccacatagcaatagctattctctcttctaaccattaccactgattgaattctactctgtttctcttctctctaatgttatgtttcttctgc 721  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  42864512 ttctcgtcaccacatagcaatagctattctctcttctaaccattaccactaattgaattctactatgtttctcttctctctaatgttatgtttcttctgc 42864611  T
Q  722 tgtttgttttctatataaattagtgttaactgttaagtagtcaacattagacaaagatgttc 783  Q
    ||||||||||| |||||||||| ||     ||||||||||||| ||||||||||||||||||    
T  42864612 tgtttgttttcgatataaattactg----atgttaagtagtcaccattagacaaagatgttc 42864669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 674 - 782
Target Start/End: Original strand, 21869148 - 21869256
Alignment:
Q  674 ttgaattctactctgtttctcttctctctaatgttatgtttcttctgctgtttgttttctatataaattagtgttaactgttaagtagtcaacattagac 773  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  21869148 ttgaattctactatgtttctcttctctctaatgttatgtttcttctgctgtttgttttcaatataaattagtgttaactgttaagtagtcaacattagac 21869247  T
Q  774 aaagatgtt 782  Q
    |||||||||    
T  21869248 aaagatgtt 21869256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 564 - 720
Target Start/End: Complemental strand, 22976673 - 22976519
Alignment:
Q  564 caagtctcgcagcgctatcaaaatcatattatctcttctaacctnnnnnnnntagggtttctcgtcaccacatagcaatagctattctctcttctaacca 663  Q
    ||||||| ||||||||||||||| |||||| |||||| |||||         |||||||||||||||||||||||| |||||||||  ||||||||||||    
T  22976673 caagtctagcagcgctatcaaaaacatattgtctcttttaacc--caaaaaatagggtttctcgtcaccacatagcgatagctatttcctcttctaacca 22976576  T
Q  664 ttaccactgattgaattctactctgtttctcttctctctaatgttatgtttcttctg 720  Q
    ||||||| |||||||||||||| ||||||| ||||||||||||  ||||||||||||    
T  22976575 ttaccaccgattgaattctactatgtttcttttctctctaatgccatgtttcttctg 22976519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 272 - 389
Target Start/End: Original strand, 42864250 - 42864368
Alignment:
Q  272 ctctcaagccccgatactccaaaaatggtgaagtatcgaatctgacacgtatccgataccgatacgcctcgatgcgtcccgatacaggtatcgga-aagt 370  Q
    |||| ||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||| | || |||||||| ||  |||||||| ||||    
T  42864250 ctctgaagccccgaaactccaaaaatggtgaagtatcgtatccgacacgtatccgataccgatacgccccaatacgtcccgacacttgtatcggagaagt 42864349  T
Q  371 atcgggcaattaatattta 389  Q
    ||||| || ||||||||||    
T  42864350 atcggacagttaatattta 42864368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 272 - 356
Target Start/End: Complemental strand, 53363199 - 53363115
Alignment:
Q  272 ctctcaagccccgatactccaaaaatggtgaagtatcgaatctgacacgtatccgataccgatacgcctcgatgcgtcccgatac 356  Q
    |||| ||||||||||||||||||||||||||||||||| ||| |||| ||||| ||||||||||| || |||| |||||||||||    
T  53363199 ctctgaagccccgatactccaaaaatggtgaagtatcgtatccgacatgtatctgataccgatacaccccgatacgtcccgatac 53363115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 721 - 782
Target Start/End: Complemental strand, 22976493 - 22976432
Alignment:
Q  721 ctgtttgttttctatataaattagtgttaactgttaagtagtcaacattagacaaagatgtt 782  Q
    |||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||    
T  22976493 ctgtttattttcgatataaattagtgttaactattaagtagtcaacattagacaaaggtgtt 22976432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 277 - 336
Target Start/End: Complemental strand, 27391411 - 27391352
Alignment:
Q  277 aagccccgatactccaaaaatggtgaagtatcgaatctgacacgtatccgataccgatac 336  Q
    ||||||| |||||||||||||||||||| ||||  |||||||||||||||||||||||||    
T  27391411 aagcccctatactccaaaaatggtgaagaatcgtgtctgacacgtatccgataccgatac 27391352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 423 - 476
Target Start/End: Original strand, 25041308 - 25041361
Alignment:
Q  423 atacgtcccgatacgcgtatcggagaagtatcgaacaattaatatttatttttt 476  Q
    ||||||||||||||| ||||| || ||||||||  |||||||||||||||||||    
T  25041308 atacgtcccgatacgagtatcagaaaagtatcgcgcaattaatatttatttttt 25041361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 507 - 560
Target Start/End: Original strand, 29359793 - 29359846
Alignment:
Q  507 gtgtcggatacgactaacttgtactccgacagagcttacttatactccgacacc 560  Q
    |||||||||||| ||||||||||||||||||  | | |||||||||||||||||    
T  29359793 gtgtcggatacggctaacttgtactccgacacgggtaacttatactccgacacc 29359846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 687 - 720
Target Start/End: Original strand, 29360014 - 29360047
Alignment:
Q  687 tgtttctcttctctctaatgttatgtttcttctg 720  Q
    ||||||||||||||||||||||||||||||||||    
T  29360014 tgtttctcttctctctaatgttatgtttcttctg 29360047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 739 - 783
Target Start/End: Complemental strand, 41530407 - 41530363
Alignment:
Q  739 aattagtgttaactgttaagtagtcaacattagacaaagatgttc 783  Q
    |||||||||||||| | |||||||||||||||||||| |||||||    
T  41530407 aattagtgttaactataaagtagtcaacattagacaatgatgttc 41530363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 721 - 772
Target Start/End: Original strand, 29360074 - 29360125
Alignment:
Q  721 ctgtttgttttctatataaattagtgttaactgttaagtagtcaacattaga 772  Q
    |||||||||||| || |||||||||||||||| | ||| |||||||||||||    
T  29360074 ctgtttgttttcgatctaaattagtgttaactatcaagcagtcaacattaga 29360125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 291; Significance: 1e-163; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 271 - 782
Target Start/End: Original strand, 21111998 - 21112490
Alignment:
Q  271 tctctcaagccccgatactccaaaaatggtgaagtatcgaatctgacacgtatccgataccgatacgcctcgatgcgtcccgatacaggtatcggaaa-g 369  Q
    ||||| ||| ||||||||||||||||||||||||||||| ||| || ||||||| |||| ||||||||||||||  |||||||||| ||||||||||| |    
T  21111998 tctctaaagtcccgatactccaaaaatggtgaagtatcgtatccgatacgtatcggatatcgatacgcctcgatatgtcccgatacgggtatcggaaaag 21112097  T
Q  370 tatcgggcaattaatatttannnnnnngaaaaacaatgaccgatacgtgtcggatacgtcccgatacgcgtatcggagaagtatcgaacaattaatattt 469  Q
    ||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||           || |||||||||    
T  21112098 tatcgggcaattaatatttatttttttgaaaaacaatgaccgatacgtgtcggatacgtcccgatacgcgtatcgga-----------cagttaatattt 21112186  T
Q  470 attttttgaaggnnnnnnntgaccgatacgtgtcgccgtgtcggatacgactaacttgtactccgacagagcttacttatactccgacacctatcaagtc 569  Q
    ||||||||||||       |||| |||||||||||        ||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||    
T  21112187 attttttgaaggaaaaaaatgactgatacgtgtcg--------gatacgactaacttgtactccgacacaacttacttatactctgacacctatcaagtc 21112278  T
Q  570 tcgcagcgctatcaaaatcatattatctcttctaacctnnnnnnnntagggtttctcgtcaccacatagcaatagctattctctcttctaaccattacca 669  Q
    | |||||||||||||||||||||| |||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21112279 tggcagcgctatcaaaatcatattgtctcttctaacctaaaaaaa-tagggtttctcgtcaccacatagcaatagctattctctcttctaaccattacca 21112377  T
Q  670 ctgattgaattctactctgtttctcttctctctaatgttatgtttcttctgctgtttgttttctatataaattagtgttaactgttaagtagtcaacatt 769  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  21112378 ctgattgaattctactctgtttctcttctctctaatgttatgtttcttctgctgtttgtttttgatataaattagtgttaactgttaagtagtcaacatt 21112477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 272 - 783
Target Start/End: Original strand, 8861950 - 8862433
Alignment:
Q  272 ctctcaagccccgatactccaaaaatggtgaagtatcgaatctgacacgtatccgataccgatacgcctcgatgcgtcccgatacaggtatcggaaag-t 370  Q
    |||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||          || |||| |||||||||||  |    
T  8861950 ctctgaagccccgatactccaaaaatggtgaagtatcgtatccgacacgtatccgataccgatacgcc----------ccaatacgggtatcggaaaaat 8862039  T
Q  371 atcgggcaattaatatttannnnnnngaaaaacaatgaccgatacgtgtcggatacgtcccgatacgcgtatcggagaagtatcgaacaattaatattta 470  Q
    |||||||||||||||||||       |||||||||||||||||||||           ||||||||||||||||||||||||||| | | ||||||||||    
T  8862040 atcgggcaattaatatttatttttttgaaaaacaatgaccgatacgt-----------cccgatacgcgtatcggagaagtatcggatagttaatattta 8862128  T
Q  471 ttttttgaaggnnnnnnn-tgaccgatacgtgtcgccgtgtcggatacgactaacttgtactccgacagagcttacttatactccgacacctatcaagtc 569  Q
    |||||||||||        | | ||||||||||||        |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  8862129 ttttttgaaggaaaaaaaataatcgatacgtgtcg--------gatacgactaacttatactccgacacagcttacttatactccgacacctatcaagtc 8862220  T
Q  570 tcgcagcgctatcaaaatcatattatctcttctaacctnnnnnnnntagggtttctcgtcaccacatagcaatagctattctctcttctaaccattacca 669  Q
    | |||||||||||||||||||||| |||||||||||||        ||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  8862221 tagcagcgctatcaaaatcatattgtctcttctaacctaaaaaaa-tagggtttctcgtcaccgcatagcaatagctattctctcttctaaccattacca 8862319  T
Q  670 ctgattgaattctactctgtttctcttctctctaatgttatgtttcttctgctgtttgttttctatataaattagtgttaactgttaagtagtcaacatt 769  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||||| |||||||||||| |||||||||    
T  8862320 ctgattgaattctactctgtttctcttctctataatgttatgtttcttctactgtttgttttcgatataaattagtgataactgttaagtggtcaacatt 8862419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 177; E-Value: 6e-95
Query Start/End: Original strand, 272 - 601
Target Start/End: Original strand, 11382414 - 11382737
Alignment:
Q  272 ctctcaagccccgatactccaaaaatggtgaagtatcgaatctgacacgtatccgataccgatacgcctcgatgcgtcccgatacaggtatcggaaa-gt 370  Q
    |||| ||| ||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||| |||| | ||||||||| |||||| |||| ||    
T  11382414 ctctaaagtcccgatactccaaaaatggtgaagtatcgtatcagacacgtatccgatatcgatacgccccgatacatcccgatacgggtatcagaaaagt 11382513  T
Q  371 atcgggcaattaatatttannnnnnngaaaaacaatgaccgatacgtgtcggatacgtcccgatacgcgtatcggagaagtatcgaacaattaatattta 470  Q
    ||||| |||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  11382514 atcggacaattaatatttatttttttgaaaaacaatgaccgatacgtgtcggatacgtcccgatacgcgtatcgaagaagtatcggacaattaatattta 11382613  T
Q  471 ttttttgaagg-nnnnnnntgaccgatacgtgtcgccgtgtcggatacgactaacttgtactccgacagagcttacttatactccgacacctatcaagtc 569  Q
    |||||||||||        ||| |||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11382614 ttttttgaaggaaaaaaaatgagcgata--------cgtgtcggatacgactaacttgtactccgacagagcttacttatactccgacacctatcaagtc 11382705  T
Q  570 tcgcagcgctatcaaaatcatattatctcttc 601  Q
    |  ||||||||||||||||||||| |||||||    
T  11382706 tgacagcgctatcaaaatcatattgtctcttc 11382737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 289; Significance: 1e-162; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 271 - 783
Target Start/End: Original strand, 30947455 - 30947962
Alignment:
Q  271 tctctcaagccccgatactccaaaaatggtgaagtatcgaatctgacacgtatccgataccgatacgcctcgatgcgtcccgatacaggtatcggaaa-g 369  Q
    ||||| ||||||||||||| ||||||||||||||||||| ||| ||||||||| ||||||||||||||| |||| ||| ||||||| ||||||| ||| |    
T  30947455 tctctgaagccccgatactacaaaaatggtgaagtatcgtatccgacacgtattcgataccgatacgccccgatacgttccgatacgggtatcgaaaaag 30947554  T
Q  370 tatcgggcaattaatatttannnnnnngaaaaacaatgaccgatacgtgtcggatacgtcccgatacgcgtatcggagaagtatcgaacaattaatattt 469  Q
    ||||||||||||||||||||       ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  30947555 tatcgggcaattaatatttatttttttgaaaaacaatgactgatacgtgtcggatacgtcccgatacgcgtatcggagaagtatcagacaattaatattt 30947654  T
Q  470 attttttgaaggnnnnnnntgaccgatacgtgtcgccgtgtcggatacgactaact----tgtactccgacagagcttacttatactccgacacctatca 565  Q
    ||||||||||||       |||| |||||||||||        |||||||||||||    |||||||||||| |||||||||||||||||||||||||||    
T  30947655 attttttgaaggaaaaaaatgactgatacgtgtcg--------gatacgactaactaacttgtactccgacacagcttacttatactccgacacctatca 30947746  T
Q  566 agtctcgcagcgctatcaaaatcatattatctcttctaacctnnnnnnnntagggtttctcgtcaccacatagcaatagctattctctcttctaaccatt 665  Q
    ||||| |||||||||||||||||||||| |||||||||| ||        ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30947747 agtctggcagcgctatcaaaatcatattgtctcttctaatctaaaaaaa-tagggtttctcgtcaccacatagcaatagctattctctcttctaaccatt 30947845  T
Q  666 accactgattgaattctactctgtttctcttctctctaatgttatgtttcttctgctgtttgttttctatataaattagtgttaactgttaagtagtcaa 765  Q
    ||||| |||||||||||||| |||||||||||||||  |||||||||||||||||| |||||||||| |||||||||||||||||||||||| |||||||    
T  30947846 accaccgattgaattctactatgtttctcttctctc-gatgttatgtttcttctgccgtttgttttcgatataaattagtgttaactgttaaatagtcaa 30947944  T
Q  766 cattagacaaagatgttc 783  Q
    ||||||||||||||||||    
T  30947945 cattagacaaagatgttc 30947962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 272 - 783
Target Start/End: Complemental strand, 19928419 - 19927928
Alignment:
Q  272 ctctcaagccccgatactccaaaaatggtgaagtatcgaatctgacacgtatccgataccgatacgcctcgatgcgtcccgatacaggtatcggaaagta 371  Q
    |||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||  |||| | ||||||||| ||||||||          
T  19928419 ctctaaagccccgatactccaaaaatggtgaagtatcgtatccgacacgtatccgataccgatacgctccgatacatcccgatacgggtatcgg------ 19928326  T
Q  372 tcgggcaattaatatttannnnnnngaaaaacaatgaccgatacgtgtcggatacgtcccgatacgcgtatcggagaagtatcgaacaattaatatttat 471  Q
        ||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||    
T  19928325 ----gcaattaatatttatttttttgaaaaacaatgaccgatacgtgtcggatacgtcccgatacgcgtatcggagaagtatcagacagttaatatttat 19928230  T
Q  472 tttttgaaggnnnnnnn-tgaccgatacgtgtcgccgtgtcggatacgactaacttgtactccgacagagcttacttatactccgacacctatcaagtct 570  Q
    ||||||||||        |||||||||||||| |         |||||||||||||||||||||||| |||||||||||||   ||||| ||||||||||    
T  19928229 tttttgaaggaaaaaaaatgaccgatacgtgttga--------atacgactaacttgtactccgacacagcttacttataccttgacacttatcaagtct 19928138  T
Q  571 cgcagcgctatcaaaatcatattatctcttctaacctnnnnnnnntagggtttctcgtcaccacatagcaatagctattctctcttctaaccattaccac 670  Q
     |||||||||||||||||||| |  ||||||||||||        || ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19928137 ggcagcgctatcaaaatcatagt--ctcttctaacctaaaaaaa-tatggtttctcgtcaccacatagcaatagctattctctcttctaaccattaccac 19928041  T
Q  671 tgattgaattctactctgtttctcttctctctaatgttatgtttcttctgctgtttgttttctatataaattagtgttaactgttaagtagtcaacatta 770  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||    
T  19928040 tgattgaattctactctgtttctcttctctctaatgttatgtttcttctgctgtttgttttcgatataaattagtgataactgttaagtagtcaacatta 19927941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 350 - 783
Target Start/End: Original strand, 25443577 - 25444001
Alignment:
Q  350 ccgatacaggtatcggaaa-gtatcgggcaattaatatttannnnnnn-gaaaaacaatgaccgatacgtgtcggatacgtcccgatacgcgtatcggag 447  Q
    ||||||| ||||||||||| |||||| ||||||||||||||        | |||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  25443577 ccgatacgggtatcggaaaagtatcgagcaattaatatttattttttttgtaaaacaatgaccgatacgtgtcagatacatcccgatacgcgtatcggag 25443676  T
Q  448 aagtatcgaacaattaatatttattttttgaaggnnnnnnntgaccgatacgtgtcgccgtgtcggatacgactaacttgtactccgacagagcttactt 547  Q
    |||||||| |||||||||||||||||||||||||       ||||||||||||||||        ||||| | ||||||||||||| ||| | |||||||    
T  25443677 aagtatcggacaattaatatttattttttgaaggaaaaaa-tgaccgatacgtgtcg--------gatacaattaacttgtactcc-acacatcttactt 25443766  T
Q  548 atactccgacacctatcaagtctcgcagcgctatcaaaatcatattatctcttctaacctnnnnnnnntagggtttctcgtcaccacatagcaatagcta 647  Q
    ||| ||||||||||||||||||| |||||||||||||||||||||| | |||||||||||         |||||||||| |||||||||| |||||||||    
T  25443767 atattccgacacctatcaagtctggcagcgctatcaaaatcatattgtttcttctaacctaaaaaata-agggtttctcatcaccacatatcaatagcta 25443865  T
Q  648 ttctctcttctaaccattaccactgattgaattctactctgtttctcttctctctaatgttatgtttcttctgctgtttgttttctatataaattagtgt 747  Q
    |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  25443866 ttctcttttctaaccattaccacagattgaattctactctgtttctcttctctctaatgttatgtttcttctgctatttgttttcgatataaattagtgt 25443965  T
Q  748 taactgttaagtagtcaacattagacaaagatgttc 783  Q
    ||||||||||||||||||||||||||||||||||||    
T  25443966 taactgttaagtagtcaacattagacaaagatgttc 25444001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 150; E-Value: 7e-79
Query Start/End: Original strand, 272 - 590
Target Start/End: Complemental strand, 40820069 - 40819769
Alignment:
Q  272 ctctcaagccccgatactccaaaaatggtgaagtatcgaatctgacacgtatccgataccgatacgcctcgatgcgtcccgatacaggtatcggaaa-gt 370  Q
    |||| ||||||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||||          ||||||||| ||||||||||| ||    
T  40820069 ctctaaagccccgatactccaaaaatggtgaagtatcgtatccgacacgtatgcgataccgatacg----------tcccgatacgggtatcggaaaagt 40819980  T
Q  371 atcgggcaattaatatttannnnnnngaaaaacaatgaccgatacgtgtcggatacgtcccgatacgcgtatcggagaagtatcgaacaattaatattta 470  Q
    |||||| ||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  40819979 atcgggaaattaatatttatttttttgaaaaacaatgaccgatacgtgtcggatacgtcccgatacgcgtatcggagaagtatcggacagttaatattta 40819880  T
Q  471 ttttttgaaggnnnnnnntgaccgatacgtgtcgccgtgtcggatacgactaacttgtactccgacagagcttacttatactccgacacctatcaagtct 570  Q
    ||||||||| |       |||||||||        |||||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||    
T  40819879 ttttttgaa-gaaaaaaatgaccgata--------cgtgtcggatacgactaacttgtactccaacacagcttacttatactccgacacttatcaagtct 40819789  T
Q  571 cgcagcgctatcaaaatcat 590  Q
     |||||||||||||||||||    
T  40819788 ggcagcgctatcaaaatcat 40819769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 147; E-Value: 4e-77
Query Start/End: Original strand, 621 - 783
Target Start/End: Complemental strand, 26279781 - 26279619
Alignment:
Q  621 tttctcgtcaccacatagcaatagctattctctcttctaaccattaccactgattgaattctactctgtttctcttctctctaatgttatgtttcttctg 720  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26279781 tttctcgtcaccacataacaatagctattctctcttctaaccattaccactgattgaattctactctgtttctcttctctctaatgttatgtttcttctg 26279682  T
Q  721 ctgtttgttttctatataaattagtgttaactgttaagtagtcaacattagacaaagatgttc 783  Q
    |||||||||||| |||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  26279681 ctgtttgttttcgatataaattaatgttaactgttaagtagtcaacattggacaaagatgttc 26279619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 144; E-Value: 3e-75
Query Start/End: Original strand, 620 - 783
Target Start/End: Complemental strand, 40819768 - 40819605
Alignment:
Q  620 gtttctcgtcaccacatagcaatagctattctctcttctaaccattaccactgattgaattctactctgtttctcttctctctaatgttatgtttcttct 719  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  40819768 gtttctcgtcaccacatagcaatagctattctctcttctaaccattaccacttattgaattctactctgtttctcttctctctaatgttatgtttcttct 40819669  T
Q  720 gctgtttgttttctatataaattagtgttaactgttaagtagtcaacattagacaaagatgttc 783  Q
    ||||||||||||| ||||||||||||| |||| |||||||||||||||||||| ||||||||||    
T  40819668 gctgtttgttttcgatataaattagtgataacagttaagtagtcaacattagataaagatgttc 40819605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 272 - 565
Target Start/End: Complemental strand, 37245443 - 37245166
Alignment:
Q  272 ctctcaagccccgatactccaaaaatggtgaagtatcgaatctgacacgtatccgataccgatacgcctcgatgcgtcccgatacaggtatcggaaa-gt 370  Q
    |||| ||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||          ||| ||||| ||||||||||| ||    
T  37245443 ctctgaagccccgatactccaaaaatggtgaagtatcgtatccgacacgtatctgataccgatacg----------tcctgatacgggtatcggaaaagt 37245354  T
Q  371 atcgggcaattaatatttannnnnnngaaaaacaatgaccgatacgtgtcggatacgtcccgatacgcgtatcggagaagtatcgaacaattaatattta 470  Q
    |||||||||||||| ||||       |||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||  ||||||||||||||    
T  37245353 atcgggcaattaatgtttatttttttgaaaaacaatgaccgatacgtgtcagatacgtcgcgatacgcgtatcggaaaagtatcagacaattaatattta 37245254  T
Q  471 ttttttgaagg-nnnnnnntgaccgatacgtgtcgccgtgtcggatacgactaacttgtactccgacagagcttacttatactccgacacctatca 565  Q
    |||||||||||        |||||||||        |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  37245253 ttttttgaaggaaaaaaaatgaccgata--------cgtgtcggatacgactaacttgtactccgacacagcttacttatactccgacacctatca 37245166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 115; E-Value: 6e-58
Query Start/End: Original strand, 272 - 474
Target Start/End: Complemental strand, 26279982 - 26279779
Alignment:
Q  272 ctctcaagccccgatactccaaaaatggtgaagtatcgaatctgacacgtatccgataccgatacgcctcgatgcgtcccgatacaggtatcggaaa-gt 370  Q
    |||| |||||||||||||| |||||||||||||||||| ||| |||||||||| |||||||||| ||  |||| |||||||||||| |||||||||| ||    
T  26279982 ctctgaagccccgatactctaaaaatggtgaagtatcgtatccgacacgtatcagataccgatatgctccgatacgtcccgatacacgtatcggaaaagt 26279883  T
Q  371 atcgggcaattaatatttannnnnnngaaaaacaatgaccgatacgtgtcggatacgtcccgatacgcgtatcggagaagtatcgaacaattaatattta 470  Q
    |||||||||||||||||||       ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||   | ||||||||||    
T  26279882 atcgggcaattaatatttatttttttgaaaaacaatgactgatacgtgtcggatacgtcccgatacgcgtatcggagaagtatcgggaagttaatattta 26279783  T
Q  471 tttt 474  Q
    ||||    
T  26279782 tttt 26279779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 616 - 720
Target Start/End: Original strand, 22293075 - 22293179
Alignment:
Q  616 tagggtttctcgtcaccacatagcaatagctattctctcttctaaccattaccactgattgaattctactctgtttctcttctctctaatgttatgtttc 715  Q
    |||||||||||||||||| ||| | |||| ||||| ||||||||||||||||||| |||  ||||||||| |||||||||||||||||||  ||||||||    
T  22293075 tagggtttctcgtcaccatataacgatagttattccctcttctaaccattaccaccgatcaaattctactatgtttctcttctctctaatactatgtttc 22293174  T
Q  716 ttctg 720  Q
     ||||    
T  22293175 ctctg 22293179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 616 - 687
Target Start/End: Complemental strand, 22205173 - 22205102
Alignment:
Q  616 tagggtttctcgtcaccacatagcaatagctattctctcttctaaccattaccactgattgaattctactct 687  Q
    |||||||||||||||||| ||||| |||||||||| ||||||||||||||||| | ||||||||||||||||    
T  22205173 tagggtttctcgtcaccaaatagcgatagctattccctcttctaaccattaccgccgattgaattctactct 22205102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 616 - 687
Target Start/End: Original strand, 22229566 - 22229637
Alignment:
Q  616 tagggtttctcgtcaccacatagcaatagctattctctcttctaaccattaccactgattgaattctactct 687  Q
    |||||||||||||||||| ||||| |||||||||| ||||||||||||||||| | ||||||||||||||||    
T  22229566 tagggtttctcgtcaccaaatagcgatagctattccctcttctaaccattaccgccgattgaattctactct 22229637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 561 - 653
Target Start/End: Complemental strand, 37243094 - 37243003
Alignment:
Q  561 tatcaagtctcgcagcgctatcaaaatcatattatctcttctaacctnnnnnnnntagggtttctcgtcaccacatagcaatagctattctct 653  Q
    |||||||||| |||||||||||||||||||||| |||||||||||||        |||||||||||||||||||||||||||| |||||||||    
T  37243094 tatcaagtctggcagcgctatcaaaatcatattgtctcttctaacct-aaaaaaatagggtttctcgtcaccacatagcaataactattctct 37243003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 616 - 720
Target Start/End: Original strand, 45280984 - 45281088
Alignment:
Q  616 tagggtttctcgtcaccacatagcaatagctattctctcttctaaccattaccactgattgaattctactctgtttctcttctctctaatgttatgtttc 715  Q
    ||||||||||| |||||||| ||| |||| ||||| |||||||||||| || |||  |||| |||||||| ||||||||||  ||||||||| |||||||    
T  45280984 tagggtttctcatcaccacacagcgatagttattccctcttctaaccaatatcaccaattgtattctactatgtttctctttgctctaatgtcatgtttc 45281083  T
Q  716 ttctg 720  Q
    |||||    
T  45281084 ttctg 45281088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 272 - 337
Target Start/End: Original strand, 25443519 - 25443584
Alignment:
Q  272 ctctcaagccccgatactccaaaaatggtgaagtatcgaatctgacacgtatccgataccgatacg 337  Q
    |||| |||||| ||||||| |||||||||||||||||| ||| |||||||||||||||||||||||    
T  25443519 ctctgaagccctgatactcaaaaaatggtgaagtatcgtatccgacacgtatccgataccgatacg 25443584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 272 - 337
Target Start/End: Complemental strand, 22205469 - 22205404
Alignment:
Q  272 ctctcaagccccgatactccaaaaatggtgaagtatcgaatctgacacgtatccgataccgatacg 337  Q
    |||| |||||||||||||||||||||||||||| ||||  || || ||||||||||||||||||||    
T  22205469 ctctaaagccccgatactccaaaaatggtgaagaatcgtgtccgatacgtatccgataccgatacg 22205404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 272 - 337
Target Start/End: Original strand, 22229270 - 22229335
Alignment:
Q  272 ctctcaagccccgatactccaaaaatggtgaagtatcgaatctgacacgtatccgataccgatacg 337  Q
    |||| |||||||||||||||||||||||||||| ||||  || || ||||||||||||||||||||    
T  22229270 ctctaaagccccgatactccaaaaatggtgaagaatcgtgtccgatacgtatccgataccgatacg 22229335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 424 - 476
Target Start/End: Original strand, 45280729 - 45280781
Alignment:
Q  424 tacgtcccgatacgcgtatcggagaagtatcgaacaattaatatttatttttt 476  Q
    ||||||||||||||||||| ||||||||||||  |||||||||||||||||||    
T  45280729 tacgtcccgatacgcgtattggagaagtatcggtcaattaatatttatttttt 45280781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 721 - 776
Target Start/End: Complemental strand, 22205059 - 22205004
Alignment:
Q  721 ctgtttgttttctatataaattagtgttaactgttaagtagtcaacattagacaaa 776  Q
    |||||| ||||| ||||||||||||||||||| ||| |||||||||||||||||||    
T  22205059 ctgtttcttttcgatataaattagtgttaactattaggtagtcaacattagacaaa 22205004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 721 - 776
Target Start/End: Original strand, 22229680 - 22229735
Alignment:
Q  721 ctgtttgttttctatataaattagtgttaactgttaagtagtcaacattagacaaa 776  Q
    |||||| ||||| ||||||||||||||||||| ||| |||||||||||||||||||    
T  22229680 ctgtttcttttcgatataaattagtgttaactattaggtagtcaacattagacaaa 22229735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 422 - 476
Target Start/End: Complemental strand, 15043355 - 15043301
Alignment:
Q  422 gatacgtcccgatacgcgtatcggagaagtatcgaacaattaatatttatttttt 476  Q
    |||||||||||||||| ||||||| |||||||||  |||||||||||||||||||    
T  15043355 gatacgtcccgatacgtgtatcggtgaagtatcggccaattaatatttatttttt 15043301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 722 - 776
Target Start/End: Original strand, 22293205 - 22293259
Alignment:
Q  722 tgtttgttttctatataaattagtgttaactgttaagtagtcaacattagacaaa 776  Q
    ||||||||||  || |||||||||||||||| |||||||||||||||||||||||    
T  22293205 tgtttgtttttgatctaaattagtgttaactattaagtagtcaacattagacaaa 22293259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 422 - 476
Target Start/End: Complemental strand, 26279912 - 26279858
Alignment:
Q  422 gatacgtcccgatacgcgtatcggagaagtatcgaacaattaatatttatttttt 476  Q
    ||||||||||||||| ||||||||| ||||||||  |||||||||||||||||||    
T  26279912 gatacgtcccgatacacgtatcggaaaagtatcgggcaattaatatttatttttt 26279858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 422 - 476
Target Start/End: Original strand, 36630392 - 36630446
Alignment:
Q  422 gatacgtcccgatacgcgtatcggagaagtatcgaacaattaatatttatttttt 476  Q
    |||| ||||||||||| ||||||||||||||||  ||||||||||||||||||||    
T  36630392 gatatgtcccgatacgtgtatcggagaagtatctgacaattaatatttatttttt 36630446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 422 - 476
Target Start/End: Original strand, 36630251 - 36630305
Alignment:
Q  422 gatacgtcccgatacgcgtatcggagaagtatcgaacaattaatatttatttttt 476  Q
    |||| ||||||||| | |||||||||||||||| | |||||||||||||||||||    
T  36630251 gatatgtcccgatatgtgtatcggagaagtatcaagcaattaatatttatttttt 36630305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 422 - 479
Target Start/End: Complemental strand, 22205409 - 22205352
Alignment:
Q  422 gatacgtcccgatacgcgtatcggagaagtatcgaacaattaatatttattttttgaa 479  Q
    ||||||| ||||||||||||||||| ||||||||  |||||||||||  |||||||||    
T  22205409 gatacgttccgatacgcgtatcggaaaagtatcgggcaattaatattatttttttgaa 22205352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 422 - 479
Target Start/End: Original strand, 22229330 - 22229387
Alignment:
Q  422 gatacgtcccgatacgcgtatcggagaagtatcgaacaattaatatttattttttgaa 479  Q
    ||||||| ||||||||||||||||| ||||||||  |||||||||||  |||||||||    
T  22229330 gatacgttccgatacgcgtatcggaaaagtatcgggcaattaatattatttttttgaa 22229387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 722 - 775
Target Start/End: Complemental strand, 26244717 - 26244664
Alignment:
Q  722 tgtttgttttctatataaattagtgttaactgttaagtagtcaacattagacaa 775  Q
    ||||||||||| || | |||||||||||| | ||||||||||||||||||||||    
T  26244717 tgtttgttttcaatctcaattagtgttaattattaagtagtcaacattagacaa 26244664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 678 - 718
Target Start/End: Original strand, 36630746 - 36630786
Alignment:
Q  678 attctactctgtttctcttctctctaatgttatgtttcttc 718  Q
    |||||||| |||||||||||| |||||||||||||||||||    
T  36630746 attctactatgtttctcttctttctaatgttatgtttcttc 36630786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 341 - 427
Target Start/End: Complemental strand, 15043356 - 15043269
Alignment:
Q  341 cgatgcgtcccgatacaggtatcgga-aagtatcgggcaattaatatttannnnnnngaaaaacaatgaccgatacgtgtcggatacg 427  Q
    |||| |||||||||||  |||||||  ||||||||| |||||||||||||       |||||| ||||||||||| ||||||||||||    
T  15043356 cgatacgtcccgatacgtgtatcggtgaagtatcggccaattaatatttatttttttgaaaaaaaatgaccgatatgtgtcggatacg 15043269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 506 - 556
Target Start/End: Original strand, 45280804 - 45280854
Alignment:
Q  506 cgtgtcggatacgactaacttgtactccgacagagcttacttatactccga 556  Q
    |||||| |||||||||||||||||||| ||||  ||| |||||||||||||    
T  45280804 cgtgtcagatacgactaacttgtactctgacacggctaacttatactccga 45280854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 738 - 776
Target Start/End: Original strand, 45281169 - 45281207
Alignment:
Q  738 aaattagtgttaactgttaagtagtcaacattagacaaa 776  Q
    ||||||||||||||| ||||| |||||||||||||||||    
T  45281169 aaattagtgttaactattaagcagtcaacattagacaaa 45281207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 245; Significance: 1e-135; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 366 - 783
Target Start/End: Original strand, 54260130 - 54260528
Alignment:
Q  366 aaagtatcgggcaattaatatttannnnnnn-gaaaaacaatgaccgatacgtgtcggatacgtcccgatacgcgtatcggagaagtatcgaacaattaa 464  Q
    ||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||           |||||||    
T  54260130 aaagtatcgggcaattaatatttattttttttgaaaaacaatgaccgatacgtgtcggatacgtcccgatacgcgtatcgga-----------caattaa 54260218  T
Q  465 tatttattttttgaaggnnnnnnntgaccgatacgtgtcgccgtgtcggatacgactaacttgtactccgacagagcttacttatactccgacacctatc 564  Q
    |||||||||||||||||       ||||||||||||||||        ||||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  54260219 tatttattttttgaaggaaaaaaatgaccgatacgtgtcg--------gatacgactaacttgtactccgacacaacttacttatactccgacacctatc 54260310  T
Q  565 aagtctcgcagcgctatcaaaatcatattatctcttctaacctnnnnnnnntagggtttctcgtcaccacatagcaatagctattctctcttctaaccat 664  Q
    |||||| |||||||||||||||||||||| |||||||||||||        |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  54260311 aagtctggcagcgctatcaaaatcatattgtctcttctaacctaaaaaaa-taggttttctcgtcaccacatagcaatagctattctctcttctaaccat 54260409  T
Q  665 taccactgattgaattctactctgtttctcttctctctaatgttatgtttcttctgctgtttgttttctatataaattagtgttaactgttaagtagtca 764  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  54260410 taccactgattgaattctactctgtttctcttctctctaatgttatgtttcttctgctgtttgttttcgatataaattagtgttaactattaagtagtca 54260509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 272 - 344
Target Start/End: Complemental strand, 563415 - 563343
Alignment:
Q  272 ctctcaagccccgatactccaaaaatggtgaagtatcgaatctgacacgtatccgataccgatacgcctcgat 344  Q
    |||| ||||||||||||||||||||| | |||| |||| ||||||||| ||||||||||||||||||| ||||    
T  563415 ctctaaagccccgatactccaaaaatcgcgaagaatcgtatctgacacatatccgataccgatacgccccgat 563343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 429 - 475
Target Start/End: Original strand, 26261054 - 26261100
Alignment:
Q  429 cccgatacgcgtatcggagaagtatcgaacaattaatatttattttt 475  Q
    |||||||||| ||||||||||||||||  ||||||||||||||||||    
T  26261054 cccgatacgcatatcggagaagtatcgggcaattaatatttattttt 26261100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 620 - 670
Target Start/End: Original strand, 26261273 - 26261323
Alignment:
Q  620 gtttctcgtcaccacatagcaatagctattctctcttctaaccattaccac 670  Q
    |||||||||||||||  ||| |||||||||| |||||||||||||||||||    
T  26261273 gtttctcgtcaccaccgagctatagctattccctcttctaaccattaccac 26261323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 272 - 309
Target Start/End: Original strand, 54260056 - 54260093
Alignment:
Q  272 ctctcaagccccgatactccaaaaatggtgaagtatcg 309  Q
    |||| |||||||||||||||||||||||||||||||||    
T  54260056 ctctgaagccccgatactccaaaaatggtgaagtatcg 54260093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 679 - 720
Target Start/End: Original strand, 26261383 - 26261424
Alignment:
Q  679 ttctactctgtttctcttctctctaatgttatgtttcttctg 720  Q
    |||| |||| |||||||||||||||||| |||||||||||||    
T  26261383 ttctgctctctttctcttctctctaatgctatgtttcttctg 26261424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 240; Significance: 1e-132; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 277 - 780
Target Start/End: Complemental strand, 46398266 - 46397774
Alignment:
Q  277 aagccccgatactccaaaaatggtgaagtatcgaatctgacacgtatccgataccgatacgcctcgatgcgtcccgatacaggtatcggaaa-gtatcgg 375  Q
    ||||||||||||||||||||||||| ||||||| |||  ||||||||| |||||||||||||  |||| ||| ||||||| |||||| |||| || ||||    
T  46398266 aagccccgatactccaaaaatggtgtagtatcgtatccaacacgtatctgataccgatacgctccgatacgttccgatacgggtatcagaaaagtgtcgg 46398167  T
Q  376 gcaattaatatttannnnnnngaaaaacaatgaccgatacgtgtcggatacgtcccgatacgcgtatcggagaagtatcgaacaattaatatttattttt 475  Q
    ||||||||||||||       |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||    
T  46398166 gcaattaatatttatttttttgaaaaacaatgaccgatacgtgtcggatacgtcccgatacacgtatcggagaagtatcggacaattaatatttattttt 46398067  T
Q  476 tgaag-gnnnnnnntgaccgatacgtgtcgccgtgtcggatacgactaacttgtactccgacagagcttacttatactccgacacctatcaagtctcgca 574  Q
    |||||         |||||||||        |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||  ||    
T  46398066 tgaagaaaaaaaaatgaccgata--------cgtgtcggatacgactaacttgtactcccacacagcttacttatactccgacacctatcaagtctgaca 46397975  T
Q  575 gcgctatcaaaatcatattatctcttctaacctnnnnnnnntagggtttctcgtcaccacatagcaatagctattctctcttctaaccattaccactgat 674  Q
    |||||||||||||||||   ||| |||||||||        |||||||||||||||||||||| ||| || |||||||||||| || ||||||||| |||    
T  46397974 gcgctatcaaaatcata--gtcttttctaacct-aaaaaaatagggtttctcgtcaccacatatcaacagttattctctcttccaatcattaccaccgat 46397878  T
Q  675 tgaattctactctgtttctcttctctctaatgttatgtttcttctgctgtttgttttctatataaattagtgttaactgttaagtagtcaacattagaca 774  Q
    |||||||||  ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||||| ||||||| |||||||||||||    
T  46397877 tgaattcta--ctgtttctcttctctctaatgttatgtttcttctgttgtttgttttcgatataaattattgttaactattaagtaatcaacattagaca 46397780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 576 - 720
Target Start/End: Original strand, 33368975 - 33369114
Alignment:
Q  576 cgctatcaaaatcatattatctcttctaacctnnnnnnnntagggtttctcgtcaccacatagcaatagctattctctcttctaaccattaccactgatt 675  Q
    ||||||||||| |||||||||||||||||||         | |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||    
T  33368975 cgctatcaaaaacatattatctcttctaacc--caaaaaattgggtttctcgtcaccacatagcgatagctattccctcttctaaccattaccactgatt 33369072  T
Q  676 gaattctactctgtttctcttctctctaatgttatgtttcttctg 720  Q
    |||||||||||||||||   ||||||||||| |||||||||||||    
T  33369073 gaattctactctgtttc---tctctctaatgctatgtttcttctg 33369114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 422 - 480
Target Start/End: Complemental strand, 23206363 - 23206306
Alignment:
Q  422 gatacgtcccgatacgcgtatcggagaagtatcgaacaattaatatttattttttgaag 480  Q
    |||| |||||||||| ||||| ||||||||||| |||||||||||||||||||||||||    
T  23206363 gatatgtcccgatacacgtattggagaagtatc-aacaattaatatttattttttgaag 23206306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 728 - 782
Target Start/End: Original strand, 33369145 - 33369199
Alignment:
Q  728 ttttctatataaattagtgttaactgttaagtagtcaacattagacaaagatgtt 782  Q
    ||||| || |||| ||||||||||| |||||||||||||||||||||||| ||||    
T  33369145 ttttcaatctaaaatagtgttaactattaagtagtcaacattagacaaaggtgtt 33369199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 277 - 337
Target Start/End: Original strand, 29096172 - 29096232
Alignment:
Q  277 aagccccgatactccaaaaatggtgaagtatcgaatctgacacgtatccgataccgatacg 337  Q
    ||||||||||||| |||||||| ||||| ||||  ||| ||||||||||||||| ||||||    
T  29096172 aagccccgatacttcaaaaatgatgaagaatcgtgtctaacacgtatccgatactgatacg 29096232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 432 - 476
Target Start/End: Original strand, 33368779 - 33368823
Alignment:
Q  432 gatacgcgtatcggagaagtatcgaacaattaatatttatttttt 476  Q
    |||||||||||||||||||||||   |||||||||||||||||||    
T  33368779 gatacgcgtatcggagaagtatcaggcaattaatatttatttttt 33368823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 422 - 468
Target Start/End: Original strand, 29096227 - 29096273
Alignment:
Q  422 gatacgtcccgatacgcgtatcggagaagtatcgaacaattaatatt 468  Q
    ||||||| |||||| |||||||||||||||||||  |||||||||||    
T  29096227 gatacgttccgatatgcgtatcggagaagtatcggccaattaatatt 29096273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 235; Significance: 1e-129; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 411 - 783
Target Start/End: Original strand, 8871283 - 8871647
Alignment:
Q  411 gatacgtgtcggatacgtcccgatacgcgtatcggagaagtatcgaacaattaatatttattttttgaaggnnnnnnn-tgaccgatacgtgtcgccgtg 509  Q
    ||||||||||||  ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||        ||||||||||||||||         
T  8871283 gatacgtgtcgggcacgtcccgatacgcgtatcagagaagtatcggacaattaatatttattttttgaaggaaaaaaaatgaccgatacgtgtcg----- 8871377  T
Q  510 tcggatacgactaacttgtactccgacagagcttacttatactccgacacctatcaagtctcgcagcgctatcaaaatcatattatctcttctaacctnn 609  Q
       ||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||      
T  8871378 ---gatacgactaacttgtactccgacacatcttagttatactccgacacctatcaagtctggcagcgctatcaaaatcatattgtctcttctaacctaa 8871474  T
Q  610 nnnnnntagggtttctcgtcaccacatagcaatagctattctctcttctaaccattaccactgattgaattctactctgtttctcttctctctaatgtta 709  Q
          |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||    
T  8871475 aaaaa-tagggtttctcgtcaccacatagcaatagctattctctcttctaaccattaccactaattgaattctactatgtttctcttctctctaatgtta 8871573  T
Q  710 tgtttcttctgctgtttgttttctatataaattagtgttaactgttaagtagtcaacattagacaaagatgttc 783  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  8871574 tgtttcttctgctgtttgttttcgatataaattagtgttaactgttaagtagtcaacattagacaaaaatgttc 8871647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 210; E-Value: 1e-114
Query Start/End: Original strand, 506 - 783
Target Start/End: Complemental strand, 13854644 - 13854368
Alignment:
Q  506 cgtgtcggatacgactaacttgtactccgacagagcttacttatactccgacacctatcaagtctcgcagcgctatcaaaatcatattatctcttctaac 605  Q
    |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||    
T  13854644 cgtgtcggatacgactaacttgtactccgacacaacttacttatactccgacacctatcaagtctggcagcgctatcaaaatcatattgtctctcctaac 13854545  T
Q  606 ctnnnnnnnntagggtttctcgtcaccacatagcaatagctattctctcttctaaccattaccactgattgaattctactctgtttctcttctctctaat 705  Q
    ||        |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13854544 ctaaaaaaaatagggtttctcgtcaccacatagcaataactattatctcttctaaccattaccactgattgaattctactctgtttctcttctctctaat 13854445  T
Q  706 gttatgtttcttctgctgtttgttttctatataaattagtgttaactgttaagtagtcaacattagacaaagatgttc 783  Q
    ||||||||||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13854444 gttatgtttcttctgctatttg-tttcgatataaattagtgttaactgttaagtagtcaacattagacaaagatgttc 13854368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 272 - 685
Target Start/End: Original strand, 36606086 - 36606480
Alignment:
Q  272 ctctcaagccccgatactccaaaaatggtgaagtatcgaatctgacacgtatccgataccgatacgcctcgatgcgtcccgatacaggtatcggaaag-t 370  Q
    |||||||||||| ||| ||||||||||||||||||||| |||  |||||||||||||| |||||||          ||||||||| |||||||||||  |    
T  36606086 ctctcaagccccaatattccaaaaatggtgaagtatcgtatcctacacgtatccgatatcgatacg----------tcccgatacgggtatcggaaaaat 36606175  T
Q  371 atcgggcaattaatatttannnnnnngaaaaacaatgaccgatacgtgtcggatacgtcccgatacgcgtatcggagaagtatcgaacaattaatattta 470  Q
    ||| || ||||||||||||       ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||    
T  36606176 atcaggaaattaatatttatttttttgaaaaacaatgaccgatacgtgtcggatacgtcccgatatgcgtgtcggagaagtatcggacaattaatattta 36606275  T
Q  471 ttttttgaaggnnnnnnntgaccgatacgtgtcgccgtgtcggatacgactaacttgtactccgacagagcttacttatactccgacacctatcaagtct 570  Q
    |||||| ||||       ||||||| |||||        |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||    
T  36606276 tttttttaaggaaaaaa-tgaccgacacgtg--------tcggatacgactaacttgtactccgacacagcttacttatactctgacacctatcaagtct 36606366  T
Q  571 cgcagcgctatcaaaatcatattatctcttctaacctnnnnnnnntagggtttctcgtcaccacatagcaatagctattctctcttctaaccattaccac 670  Q
     |||||||||||||||||||||| |||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  36606367 ggcagcgctatcaaaatcatattgtctcttctaacct-aaaaaaatagggtttctcgtcaccacatagcaatagctattctctcttctaaccattatcac 36606465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 564 - 717
Target Start/End: Original strand, 6665857 - 6666009
Alignment:
Q  564 caagtctcgcagcgctatcaaaatcatattatctcttctaacctnnnnnnnntagggtttctcgtcaccacatagcaatagctattctctcttctaacca 663  Q
    ||||||| ||||||||||||||| |||||| ||||||||||||         |||||||||||||||||||||||| ||| |||||| ||||||||||||    
T  6665857 caagtctggcagcgctatcaaaaacatattgtctcttctaacc-caaaaaaatagggtttctcgtcaccacatagcgataactattccctcttctaacca 6665955  T
Q  664 ttaccactgattgaattctactctgtttctcttctctctaatgttatgtttctt 717  Q
    |||||||  ||||||||||||| ||||||||||  ||||||||  |||||||||    
T  6665956 ttaccaccaattgaattctactatgtttctctttgctctaatgccatgtttctt 6666009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 564 - 720
Target Start/End: Original strand, 32659069 - 32659224
Alignment:
Q  564 caagtctcgcagcgctatcaaaatcatattatctcttctaacctnnnnnnnntagggtttctcgtcaccacatagcaatagctattctctcttctaacca 663  Q
    ||||||| ||| ||||||||||| |||||| ||||||||||||         |||||||||||||||||||||||| ||||||||||  ||||||| |||    
T  32659069 caagtctggcaacgctatcaaaaacatattgtctcttctaacc-ccaaaatatagggtttctcgtcaccacatagcgatagctattccatcttctaccca 32659167  T
Q  664 ttaccactgattgaattctactctgtttctcttctctctaatgttatgtttcttctg 720  Q
    ||||   |||||||||||||||  ||||||| || ||||||||||||||||||||||    
T  32659168 ttacttatgattgaattctactaagtttctcctccctctaatgttatgtttcttctg 32659224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 272 - 427
Target Start/End: Original strand, 6665622 - 6665776
Alignment:
Q  272 ctctcaagccccgatactccaaaaatggtgaagtatcgaatctgacacgtatccgataccgatacgcctcgatgcgtcccgatacaggtatcgga-aagt 370  Q
    |||| ||||||||||||||| |||||||||||| ||||  || ||||||||| ||||||||||||||| |||| |||||| ||||  |||||||| ||||    
T  6665622 ctctgaagccccgatactccgaaaatggtgaaggatcgtgtccgacacgtattcgataccgatacgccccgatacgtcccaatacgcgtatcggagaagt 6665721  T
Q  371 atcgggcaattaatatttannnnnnngaaaaacaatgaccgatacgtgtcggatacg 427  Q
    |||| |||||||||||||        |||||| ||| ||||||||||||||||||||    
T  6665722 atcgagcaattaatattt--ttttttgaaaaaaaattaccgatacgtgtcggatacg 6665776  T

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Target: chr5; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 716 - 783
Target Start/End: Original strand, 36606474 - 36606541
Alignment:
Q  716 ttctgctgtttgttttctatataaattagtgttaactgttaagtagtcaacattagacaaagatgttc 783  Q
    |||| |||||||||||  |||||||||||| |||||||||||||||||||||||||||||||||||||    
T  36606474 ttctactgtttgtttttaatataaattagtattaactgttaagtagtcaacattagacaaagatgttc 36606541  T

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Target: chr5; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 721 - 777
Target Start/End: Original strand, 6666038 - 6666094
Alignment:
Q  721 ctgtttgttttctatataaattagtgttaactgttaagtagtcaacattagacaaag 777  Q
    |||||||||||| |||||||||||||||||||  |||||||||||||||||||||||    
T  6666038 ctgtttgttttcgatataaattagtgttaactagtaagtagtcaacattagacaaag 6666094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 422 - 475
Target Start/End: Original strand, 6665692 - 6665745
Alignment:
Q  422 gatacgtcccgatacgcgtatcggagaagtatcgaacaattaatatttattttt 475  Q
    |||||||||| |||||||||||||||||||||||| |||||||||||| |||||    
T  6665692 gatacgtcccaatacgcgtatcggagaagtatcgagcaattaatattttttttt 6665745  T

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Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 728 - 783
Target Start/End: Original strand, 32659258 - 32659313
Alignment:
Q  728 ttttctatataaattagtgttaactgttaagtagtcaacattagacaaagatgttc 783  Q
    |||| ||| |||||||||||||||| |||||||||||||||||||||||| |||||    
T  32659258 ttttttatctaaattagtgttaactattaagtagtcaacattagacaaaggtgttc 32659313  T

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Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 272 - 321
Target Start/End: Original strand, 8871240 - 8871289
Alignment:
Q  272 ctctcaagccccgatactccaaaaatggtgaagtatcgaatctgacacgt 321  Q
    |||||||||||||||||||||||||| ||||||||||  |||||| ||||    
T  8871240 ctctcaagccccgatactccaaaaattgtgaagtatcatatctgatacgt 8871289  T

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Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 679 - 720
Target Start/End: Complemental strand, 30131252 - 30131211
Alignment:
Q  679 ttctactctgtttctcttctctctaatgttatgtttcttctg 720  Q
    ||||||| | |||||||||||||||||| |||||||||||||    
T  30131252 ttctactttatttctcttctctctaatgctatgtttcttctg 30131211  T

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Target: scaffold0274 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: scaffold0274
Description:

Target: scaffold0274; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 277 - 344
Target Start/End: Complemental strand, 14497 - 14430
Alignment:
Q  277 aagccccgatactccaaaaatggtgaagtatcgaatctgacacgtatccgataccgatacgcctcgat 344  Q
    |||||||  ||||||||||||||||||| ||||   ||||| ||||||| ||||||||||||| ||||    
T  14497 aagccccactactccaaaaatggtgaagaatcgtgcctgacgcgtatccaataccgatacgccccgat 14430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0274; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 422 - 455
Target Start/End: Complemental strand, 14442 - 14409
Alignment:
Q  422 gatacgtcccgatacgcgtatcggagaagtatcg 455  Q
    |||||| |||||||||||||||||||||||||||    
T  14442 gatacgccccgatacgcgtatcggagaagtatcg 14409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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