View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0740_high_30 (Length: 425)

Name: NF0740_high_30
Description: NF0740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0740_high_30
NF0740_high_30
[»] chr8 (11 HSPs)
chr8 (7-397)||(25495927-25496317)
chr8 (16-199)||(25359682-25359865)
chr8 (16-199)||(25399715-25399898)
chr8 (221-397)||(25359923-25360105)
chr8 (221-397)||(25399956-25400138)
chr8 (16-203)||(25632017-25632203)
chr8 (259-397)||(25632577-25632716)
chr8 (271-389)||(24893713-24893830)
chr8 (263-397)||(25736196-25736328)
chr8 (221-273)||(25632522-25632574)
chr8 (221-264)||(25736136-25736179)
[»] scaffold1505 (2 HSPs)
scaffold1505 (264-397)||(232-364)
scaffold1505 (221-273)||(698-750)
[»] scaffold0070 (2 HSPs)
scaffold0070 (263-397)||(29793-29924)
scaffold0070 (221-264)||(29941-29984)
[»] chr7 (2 HSPs)
chr7 (137-183)||(12289985-12290031)
chr7 (27-71)||(29782265-29782309)
[»] chr5 (1 HSPs)
chr5 (25-68)||(10193057-10193100)


Alignment Details
Target: chr8 (Bit Score: 383; Significance: 0; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 7 - 397
Target Start/End: Original strand, 25495927 - 25496317
Alignment:
Q  7 tccaagaatatccatttgtaaaaatataaagaaaaattcattttttaaaaatctattacaaacggacccagtatcgaaagttgaataatgcaaccttctt 106  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  25495927 tccaaaaatatccatttgtaaaaatataaagaaaaattcattttttaaaaatctataacaaacggacccagtatcgaaagttgaataatgcaaccttctt 25496026  T
Q  107 aagtgattggataagagaaaggaaagcaggagagggggtaacgtctggaaaaggaagaaataggtccctcaaagtatatttaccgtcattcttcttatat 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25496027 aagtgattggataagagaaaggaaagcaggagagggggtaacgtctggaaaaggaagaaataggtccctcaaagtatatttaccgtcattcttcttatat 25496126  T
Q  207 gcagtgaccctccattagttaatgtttgataatcacatgttattgtttcatttgtatacaataatttcatattttgtgataggtcaattgtttaaccata 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25496127 gcagtgaccctccattagttaatgtttgataatcacatgttattgtttcatttgtatacaataatttcatattttgtgataggtcaattgtttaaccata 25496226  T
Q  307 ctgcttttgctttaatctggaggaataggaatagctaactatgcttatctattgaatagatgagattgcaagatgcacaaaaattataaat 397  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25496227 ctgcttttgctttaatctggaggaataggaatagctaactatgcttatctattgaatagatgagattgcaagatgcacaaaaattataaat 25496317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 16 - 199
Target Start/End: Original strand, 25359682 - 25359865
Alignment:
Q  16 atccatttgtaaaaatataaagaaaaattcattttttaaaaatctattacaaacggacccagtatcgaaagttgaataatgcaaccttcttaagtgattg 115  Q
    |||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||| ||||||||||||||||    
T  25359682 atccatttttaaaaatacaaagaaaaattcattttttaaaaatctataacaaacggacccagcatggaaagttgaataatgcagccttcttaagtgattg 25359781  T
Q  116 gataagagaaaggaaagcaggagagggggtaacgtctggaaaaggaagaaataggtccctcaaagtatatttaccgtcattctt 199  Q
     ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  25359782 tataagaggaaggaaagcaggagagggggtaacgtctggaaaaggaagaaataggtccctcaaagtatatgtaccgtcattctt 25359865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 16 - 199
Target Start/End: Original strand, 25399715 - 25399898
Alignment:
Q  16 atccatttgtaaaaatataaagaaaaattcattttttaaaaatctattacaaacggacccagtatcgaaagttgaataatgcaaccttcttaagtgattg 115  Q
    |||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||| ||||||||||||||||    
T  25399715 atccatttttaaaaatacaaagaaaaattcattttttaaaaatctataacaaacggacccagcatggaaagttgaataatgcagccttcttaagtgattg 25399814  T
Q  116 gataagagaaaggaaagcaggagagggggtaacgtctggaaaaggaagaaataggtccctcaaagtatatttaccgtcattctt 199  Q
     ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  25399815 tataagaggaaggaaagcaggagagggggtaacgtctggaaaaggaagaaataggtccctcaaagtatatgtaccgtcattctt 25399898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 221 - 397
Target Start/End: Original strand, 25359923 - 25360105
Alignment:
Q  221 ttagttaatgtttgataatcacatgttattgtttcatttgtatac-aataatttcatattttgtgataggtcaattgtttaaccatactgcttttgcttt 319  Q
    ||||||| ||||||||||||||||  |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25359923 ttagttagtgtttgataatcacattgtattgtttgatttgtataccaataatttcatattttgtgataggtcaattgtttaaccatactgcttttgcttt 25360022  T
Q  320 -----aatctggaggaataggaatagctaactatgcttatctattgaatagatgagattgcaagatgcacaaaaattataaat 397  Q
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  25360023 tttataatctggaggaataggaatagctaactatgcttatctattgaatagatgagattgcaaggtgcacaaaaattataaat 25360105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 221 - 397
Target Start/End: Original strand, 25399956 - 25400138
Alignment:
Q  221 ttagttaatgtttgataatcacatgttattgtttcatttgtatac-aataatttcatattttgtgataggtcaattgtttaaccatactgcttttgcttt 319  Q
    ||||||| ||||||||||||||||  |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25399956 ttagttagtgtttgataatcacattgtattgtttgatttgtataccaataatttcatattttgtgataggtcaattgtttaaccatactgcttttgcttt 25400055  T
Q  320 -----aatctggaggaataggaatagctaactatgcttatctattgaatagatgagattgcaagatgcacaaaaattataaat 397  Q
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  25400056 tttataatctggaggaataggaatagctaactatgcttatctattgaatagatgagattgcaaggtgcacaaaaattataaat 25400138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 16 - 203
Target Start/End: Original strand, 25632017 - 25632203
Alignment:
Q  16 atccatttgtaaaaatataaagaaaaattcattttttaaaaatctattacaaacggacccagtatcgaaagttgaataatgcaaccttcttaagtgattg 115  Q
    |||||||| |||||| | ||||||||||| ||||||||| ||||||| |||||||| || | |||| |||||||||||||||| ||||||||||||| ||    
T  25632017 atccatttttaaaaacacaaagaaaaatt-attttttaataatctataacaaacgggcctaatatctaaagttgaataatgcagccttcttaagtgagtg 25632115  T
Q  116 gataagagaaaggaaagcaggagagggggtaacgtctggaaaaggaagaaataggtccctcaaagtatatttaccgtcattcttctta 203  Q
    |||||||| |||||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||| |||||||||||||||||    
T  25632116 gataagaggaaggaaagcaggagagggagtaaggtctggaaaaggaacaaataggtccctcaaagtatatgtaccgtcattcttctta 25632203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 259 - 397
Target Start/End: Original strand, 25632577 - 25632716
Alignment:
Q  259 tgtatacaataatttcatattttgtgataggtcaattgtttaaccatactgcttttgctttaatctggaggaataggaatagctaactatgcttatcta- 357  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||  | |||| ||||| |||||||||||||||||||| |||||||     
T  25632577 tgtatacagtaatttcatattttgtggtaggtcaattgtttaaccatattgctttt-ttataatttggagcaataggaatagctaactatggttatctat 25632675  T
Q  358 -ttgaatagatgagattgcaagatgcacaaaaattataaat 397  Q
     ||||||||||||||||||||||||||||||||||||||||    
T  25632676 tttgaatagatgagattgcaagatgcacaaaaattataaat 25632716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 271 - 389
Target Start/End: Complemental strand, 24893830 - 24893713
Alignment:
Q  271 tttcatattttgtgataggtcaattgtttaaccatactgcttttgctttaatctggaggaataggaatagctaactatgcttatctattgaatagatgag 370  Q
    |||||||| ||||| |||||||||||||||||||||||||||||  | |||| |||||||||||||||||||||||||| || | |||||||||||||||    
T  24893830 tttcatatgttgtggtaggtcaattgtttaaccatactgcttttt-tataatttggaggaataggaatagctaactatggttctttattgaatagatgag 24893732  T
Q  371 attgcaagatgcacaaaaa 389  Q
    ||||| ||| |||||||||    
T  24893731 attgccagaagcacaaaaa 24893713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 263 - 397
Target Start/End: Original strand, 25736196 - 25736328
Alignment:
Q  263 tacaataatttcatattttgtga----taggtcaattgtttaaccatactgcttttgctttaatctggaggaataggaatagctaactatgcttatctat 358  Q
    |||||||||||||||||||||||    |||||||||||| ||||||| ||  ||||  | |||| |||||||||| ||||||||||||||| ||||  ||    
T  25736196 tacaataatttcatattttgtgaatgataggtcaattgtgtaaccatgct--tttt--tataatttggaggaatatgaatagctaactatggttat--at 25736289  T
Q  359 tgaatagatgagattgcaagatgcacaaaaattataaat 397  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  25736290 tgaatagatgagattgcaagatgcacagaaattataaat 25736328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 221 - 273
Target Start/End: Original strand, 25632522 - 25632574
Alignment:
Q  221 ttagttaatgtttgataatcacatgttattgtttcatttgtatacaataattt 273  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  25632522 ttagttagtgtttgataatcacatgttattgtttcatttgtatacaataattt 25632574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 221 - 264
Target Start/End: Original strand, 25736136 - 25736179
Alignment:
Q  221 ttagttaatgtttgataatcacatgttattgtttcatttgtata 264  Q
    ||||||| ||||||||||||||||| ||||||||||||||||||    
T  25736136 ttagttagtgtttgataatcacatgctattgtttcatttgtata 25736179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1505 (Bit Score: 102; Significance: 2e-50; HSPs: 2)
Name: scaffold1505
Description:

Target: scaffold1505; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 264 - 397
Target Start/End: Complemental strand, 364 - 232
Alignment:
Q  264 acaataatttcatattttgtgataggtcaattgtttaaccatactgcttttgctttaatctggaggaataggaatagctaactatgcttatctattgaat 363  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||| |  | |||| |||||||||||||||||||||||||| |||||||||||||    
T  364 acaataatttcatattttgtgataggtcaattatttaaccatactgcttctt-tataatttggaggaataggaatagctaactatggttatctattgaat 266  T
Q  364 agatgagattgcaagatgcacaaaaattataaat 397  Q
    ||||||||||||||||||||||||||||||||||    
T  265 agatgagattgcaagatgcacaaaaattataaat 232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1505; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 221 - 273
Target Start/End: Complemental strand, 750 - 698
Alignment:
Q  221 ttagttaatgtttgataatcacatgttattgtttcatttgtatacaataattt 273  Q
    ||||||| ||||||||||||||||| ||||||||||||| |||| ||||||||    
T  750 ttagttagtgtttgataatcacatgctattgtttcatttatatataataattt 698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 96; Significance: 6e-47; HSPs: 2)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 263 - 397
Target Start/End: Complemental strand, 29924 - 29793
Alignment:
Q  263 tacaataatttcatattttgtgataggtcaattgtttaaccatactgcttttgctttaatctggaggaataggaatagctaactatgcttatctattgaa 362  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  | |||| ||||||||||||||||| |||||||| |||  |||||||    
T  29924 tacaataatttcatattttgtgataggtcaattgtttaaccatactgctttt-ttataatttggaggaataggaataggtaactatggtta--tattgaa 29828  T
Q  363 tagatgagattgcaagatgcacaaaaattataaat 397  Q
    |||||||||||||||||||||||||||||||||||    
T  29827 tagatgagattgcaagatgcacaaaaattataaat 29793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 264
Target Start/End: Complemental strand, 29984 - 29941
Alignment:
Q  221 ttagttaatgtttgataatcacatgttattgtttcatttgtata 264  Q
    ||||||| ||||||||||||| ||| ||||||||||||||||||    
T  29984 ttagttagtgtttgataatcaaatgctattgtttcatttgtata 29941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 137 - 183
Target Start/End: Complemental strand, 12290031 - 12289985
Alignment:
Q  137 agagggggtaacgtctggaaaaggaagaaataggtccctcaaagtat 183  Q
    ||||||| ||| ||||||||| |||||||||||||||||||||||||    
T  12290031 agaggggataaggtctggaaagggaagaaataggtccctcaaagtat 12289985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 71
Target Start/End: Original strand, 29782265 - 29782309
Alignment:
Q  27 aaaatataaagaaaaattcattttttaaaaatctattacaaacgg 71  Q
    |||||| || |||||||||| ||||||||| ||||||||||||||    
T  29782265 aaaatacaaggaaaaattcaatttttaaaattctattacaaacgg 29782309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 68
Target Start/End: Original strand, 10193057 - 10193100
Alignment:
Q  25 taaaaatataaagaaaaattcattttttaaaaatctattacaaa 68  Q
    |||||||| ||||||||||||||||||| ||||||||| |||||    
T  10193057 taaaaataaaaagaaaaattcatttttttaaaatctataacaaa 10193100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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