View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0740_high_34 (Length: 409)
Name: NF0740_high_34
Description: NF0740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0740_high_34 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 304; Significance: 1e-171; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 60 - 396
Target Start/End: Complemental strand, 29817108 - 29816772
Alignment:
| Q |
60 |
aaaatgagatgaatttgaccagcaaaatgctacacaagcaaacaacttccataagcagtatcagatgtaggcaaaatcttcaatattcgaaacttgtttg |
159 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29817108 |
aaaatgagatgaatttgaccagcaaaatgctgcactagcaaacaacttccataagcagtatcagatgtaggcaaaatcttcaatattcgaaacttgtttg |
29817009 |
T |
|
| Q |
160 |
agtggccactgttttaaagaagccgggcttgaggaagattttcaagttatgctacggtgactacagtttatattggtgagattcagtcaaagaaaatctc |
259 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29817008 |
agtggccactgttttaaagaagctgggcttgaggaagattttcaagttatgctacggtgactacagtttatattggtgagattcagtcaaagaaaatctc |
29816909 |
T |
|
| Q |
260 |
tgatacttagtgtggtttcaattcgaatttgatgtacaagannnnnnngatctatgtataaattcataaaccctgttcttctaatattccatctatattt |
359 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29816908 |
tgatacttagtgtggtttcaattcgaatttgatgtacaagatttttttgatctatgtataaattcataaaccctgttcttctaatattccatctatattt |
29816809 |
T |
|
| Q |
360 |
atagataaatttgagatgaactcctttttacttttct |
396 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29816808 |
atagataaatttgagatgaactcctttttacttttct |
29816772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 61 - 193
Target Start/End: Complemental strand, 29825371 - 29825239
Alignment:
| Q |
61 |
aaatgagatgaatttgaccagcaaaatgctacacaagcaaacaacttccataagcagtatcagatgtaggcaaaatcttcaatattcgaaacttgtttga |
160 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| |||||||| || ||||||||||||||| ||||||||||||||||||| ||||||| ||||| |
|
|
| T |
29825371 |
aaatgagatgaacttgaccagcaaaatgctacacaagccaacaacttacagaagcagtatcagatgcaggcaaaatcttcaatatttgaaacttatttga |
29825272 |
T |
|
| Q |
161 |
gtggccactgttttaaagaagccgggcttgagg |
193 |
Q |
| |
|
||||||| |||||||||||||| |||||||||| |
|
|
| T |
29825271 |
gtggccattgttttaaagaagctgggcttgagg |
29825239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 236 - 396
Target Start/End: Complemental strand, 29825243 - 29825081
Alignment:
| Q |
236 |
tgagattcagtcaaagaaaatctctgatacttagtgtggtttcaattcgaatttgatgtacaagannnnnnngatctatgtataaattcataaaccctgt |
335 |
Q |
| |
|
|||| ||||||||||||||| ||||| ||||||||||||||||||||| | |||||||| |||| |||||| |||||||| ||||| ||||| |
|
|
| T |
29825243 |
tgaggttcagtcaaagaaaacctctgttacttagtgtggtttcaattcatacttgatgtataagattgtttgaatctatctataaatttataaatcctgt |
29825144 |
T |
|
| Q |
336 |
tct--tctaatattccatctatatttatagataaatttgagatgaactcctttttacttttct |
396 |
Q |
| |
|
| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
29825143 |
tatcatctaatattccatctatatttatagataaatttgagatgaactcctttttaattttct |
29825081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 4479 times since January 2019
Visitors: 4835