View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0740_high_41 (Length: 401)
Name: NF0740_high_41
Description: NF0740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0740_high_41 |
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Alignment Details
Target: chr8 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 6 - 372
Target Start/End: Original strand, 35983513 - 35983880
Alignment:
| Q |
6 |
aggagcacagagatgtgactacaacatatagataaatcactcttgtattgctattccattatatctatatatttttgaataaaaaactacaactagtcct |
105 |
Q |
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|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35983513 |
aggaccaccgagatgtgactacaacatatagataaatcactcttgtattgctattccattatatctatatatttttgaataaaaaactacaactagtcct |
35983612 |
T |
|
| Q |
106 |
ataaatataaattatttaagggatatagacgcagtagatgatccaaatccacatgaatttagacatggttggttgacnnnnnnnatccttaaaaattgat |
205 |
Q |
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| T |
35983613 |
ataaatataaattatttaagggatacagacgcagtagatgatccaaatccacatgaatttagacatggttggttgactttttttatccttaaaaattgat |
35983712 |
T |
|
| Q |
206 |
tggataacttcagacaataccacttgaaaat-nnnnnnntatattttcctttttaatttcaatattgcacttactctttctcactcaccatatttcaact |
304 |
Q |
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||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
35983713 |
tggataacttcagacaacaccacttgaaaataaaaaaaaaatattttcctttttaatttcaataatgcacttactctttctcactcaccatatttcaact |
35983812 |
T |
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| Q |
305 |
atttctattctttgactttggaattggaaaccaaaaactccatttccactttgttctgaccttaatct |
372 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35983813 |
atttctattctttgactttggaattggaaaccaaaaactccatttccactttgttctgaccttaatct |
35983880 |
T |
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