View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0740_high_42 (Length: 391)

Name: NF0740_high_42
Description: NF0740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0740_high_42
NF0740_high_42
[»] scaffold0007 (1 HSPs)
scaffold0007 (160-305)||(182280-182425)
[»] chr4 (9 HSPs)
chr4 (160-305)||(20395747-20395892)
chr4 (40-164)||(34979273-34979397)
chr4 (162-307)||(42778387-42778532)
chr4 (162-312)||(53486799-53486949)
chr4 (162-313)||(53780188-53780339)
chr4 (162-312)||(18106402-18106552)
chr4 (162-312)||(34322165-34322315)
chr4 (186-305)||(10563179-10563298)
chr4 (208-312)||(30273704-30273808)
[»] chr8 (4 HSPs)
chr8 (162-312)||(23680306-23680456)
chr8 (162-307)||(17658980-17659125)
chr8 (162-305)||(45255675-45255817)
chr8 (162-302)||(36157311-36157451)
[»] chr5 (4 HSPs)
chr5 (162-305)||(20208565-20208708)
chr5 (162-313)||(6049366-6049517)
chr5 (162-307)||(4415546-4415691)
chr5 (162-307)||(7000611-7000756)
[»] chr3 (9 HSPs)
chr3 (162-313)||(47537411-47537562)
chr3 (162-305)||(26846018-26846161)
chr3 (162-312)||(48191943-48192093)
chr3 (165-305)||(50544375-50544515)
chr3 (234-312)||(33121235-33121313)
chr3 (162-272)||(43121512-43121622)
chr3 (170-270)||(23818763-23818863)
chr3 (250-289)||(19222260-19222299)
chr3 (171-239)||(27924921-27924989)
[»] chr6 (6 HSPs)
chr6 (162-312)||(17079037-17079187)
chr6 (162-305)||(17873664-17873807)
chr6 (162-305)||(18051295-18051438)
chr6 (162-307)||(9199098-9199243)
chr6 (162-305)||(11060708-11060848)
chr6 (162-250)||(649912-650000)
[»] chr1 (7 HSPs)
chr1 (162-312)||(17708123-17708273)
chr1 (162-307)||(10711007-10711152)
chr1 (162-313)||(47106527-47106677)
chr1 (162-312)||(30110771-30110921)
chr1 (196-305)||(26720812-26720921)
chr1 (162-303)||(21335216-21335357)
chr1 (162-269)||(28097809-28097916)
[»] chr2 (3 HSPs)
chr2 (162-307)||(1380231-1380376)
chr2 (162-312)||(2999594-2999744)
chr2 (162-263)||(11028063-11028164)
[»] scaffold0179 (2 HSPs)
scaffold0179 (162-305)||(7679-7822)
scaffold0179 (162-305)||(12613-12756)
[»] chr7 (4 HSPs)
chr7 (162-305)||(4077426-4077569)
chr7 (162-312)||(34231843-34231993)
chr7 (162-305)||(7458517-7458660)
chr7 (176-215)||(36228010-36228049)
[»] scaffold0912 (1 HSPs)
scaffold0912 (162-243)||(2719-2799)


Alignment Details
Target: scaffold0007 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 160 - 305
Target Start/End: Complemental strand, 182425 - 182280
Alignment:
Q  160 gtgtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggt 259  Q
    |||||||||||||| ||||||||||||||||| || |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  182425 gtgtggaggaggaggttgtgggcttgggaggaggaggagttagaggagtgtagggctttattgactgatgtttctttgcaagattttgtttcagacaggt 182326  T
Q  260 gggtgtggttgccagaccctgttgagggttacacagttcgcggttc 305  Q
    ||||||||||||| |||||||||||||||||||| ||||| |||||    
T  182325 gggtgtggttgcctgaccctgttgagggttacactgttcgtggttc 182280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 110; Significance: 2e-55; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 160 - 305
Target Start/End: Complemental strand, 20395892 - 20395747
Alignment:
Q  160 gtgtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggt 259  Q
    |||||||||||||| ||||||||||||||||| || |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  20395892 gtgtggaggaggaggttgtgggcttgggaggaggaggagttagaggagtgtagggctttattgactgatgtttctttgcaagattttgtttcagacaggt 20395793  T
Q  260 gggtgtggttgccagaccctgttgagggttacacagttcgcggttc 305  Q
    ||||||||||||| |||||||||||||||||||| ||||| |||||    
T  20395792 gggtgtggttgcctgaccctgttgagggttacactgttcgtggttc 20395747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 40 - 164
Target Start/End: Complemental strand, 34979397 - 34979273
Alignment:
Q  40 agaacctgtggtagttgactatcgttatgagttcatctttgacagtgtgaaaatgtggcagaaaatttgaacaatgtaaacaaattaataagacgctcta 139  Q
    |||||| | ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  34979397 agaaccagcggtagttaactatcgttatgagttcatctttaacagtgtgaaaatgtggcagaaaatttgaacaatgtaaacaaattaataagatgctcta 34979298  T
Q  140 cacgtttcttgatgtcaaatgtgtg 164  Q
    |||||||||||||||||||||||||    
T  34979297 cacgtttcttgatgtcaaatgtgtg 34979273  T

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Target: chr4; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 162 - 307
Target Start/End: Complemental strand, 42778532 - 42778387
Alignment:
Q  162 gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgg 261  Q
    |||||||||||| ||||||||||||||||| || |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  42778532 gtggaggaggaggttgtgggcttgggaggaggaggagttagaggagtgtagggccttattgactgatgtttctttgcaagattctgtttcagataggtgg 42778433  T
Q  262 gtgtggttgccagaccctgttgagggttacacagttcgcggttcat 307  Q
    || ||||||||||| ||| ||| ||||||| | |||||||||||||    
T  42778432 gtttggttgccagatcctattgtgggttactctgttcgcggttcat 42778387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 162 - 312
Target Start/End: Original strand, 53486799 - 53486949
Alignment:
Q  162 gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgg 261  Q
    |||||||||||| ||||||||||||||||| || |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||     
T  53486799 gtggaggaggaggttgtgggcttgggaggaggaggagttagaggagtgtagggccttattgactgatgtttctttgcgagattttgtttcagacaggtga 53486898  T
Q  262 gtgtggttgccagaccctgttgagggttacacagttcgcggttcatctcac 312  Q
    |||||||||||||||||| ||| ||||||| | ||||| ||||||| ||||    
T  53486899 gtgtggttgccagaccctattgtgggttactctgttcgtggttcatatcac 53486949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 162 - 313
Target Start/End: Complemental strand, 53780339 - 53780188
Alignment:
Q  162 gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgg 261  Q
    |||||||||||| |||||||| |||||||| || || ||| |||||| |||||| |||||||||||||||||| ||||||||||||||||||| ||||||    
T  53780339 gtggaggaggaggttgtgggcatgggaggaggaggaattataggagtatagggctttattgactgatgtttctctgcaagattttgtttcagacaggtgg 53780240  T
Q  262 gtgtggttgccagaccctgttgagggttacacagttcgcggttcatctcact 313  Q
    |||||||||||||| ||| || |||||||||| ||||||||||||| |||||    
T  53780239 gtgtggttgccagatcctattcagggttacactgttcgcggttcatatcact 53780188  T

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Target: chr4; HSP #6
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 162 - 312
Target Start/End: Original strand, 18106402 - 18106552
Alignment:
Q  162 gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgg 261  Q
    |||||||||||| |||||||| |||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  18106402 gtggaggaggaggttgtgggcctgggaggaggaggagttagaggagtgtagggccttattgactgatgtttctttgcaagattttgtttccgacaggtgg 18106501  T
Q  262 gtgtggttgccagaccctgttgagggttacacagttcgcggttcatctcac 312  Q
    |||||||||||||||||| | | ||||||| | ||||  ||||||| ||||    
T  18106502 gtgtggttgccagaccctttggtgggttactctgttcttggttcatatcac 18106552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 162 - 312
Target Start/End: Original strand, 34322165 - 34322315
Alignment:
Q  162 gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgg 261  Q
    |||||||||||| |||||||| |||||||| || |||||| |||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||    
T  34322165 gtggaggaggaggttgtgggcctgggaggaggaggagttagaggagtgtagagccttattgactgatgtttctttgcaagattttgtttccgacaggtgg 34322264  T
Q  262 gtgtggttgccagaccctgttgagggttacacagttcgcggttcatctcac 312  Q
    |||||||||||||||||| | | ||||||| | ||||| ||||||| ||||    
T  34322265 gtgtggttgccagaccctttggtgggttactctgttcgtggttcatatcac 34322315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 186 - 305
Target Start/End: Original strand, 10563179 - 10563298
Alignment:
Q  186 ggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgggtgtggttgccagaccctgttgag 285  Q
    |||||| || || ||| ||||||||||||| |||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||| ||| || ||    
T  10563179 ggaggaggaggaattagaggagtgtagggctttattgactgatgtttctctgcaagattttgttttagacaggtgggtgtggttgccagatcctattcag 10563278  T
Q  286 ggttacacagttcgcggttc 305  Q
    |||||||| |||||||||||    
T  10563279 ggttacactgttcgcggttc 10563298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 208 - 312
Target Start/End: Original strand, 30273704 - 30273808
Alignment:
Q  208 tgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgggtgtggttgccagaccctgttgagggttacacagttcgcggttcat 307  Q
    |||||||||||||||| |||| ||| ||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||| | ||||| |||||||    
T  30273704 tgtagggccttattgattgatatttttttgcaagattttgtttcagacaggtgggtgtggttgccagacccttttgtgggttactctgttcgtggttcat 30273803  T
Q  308 ctcac 312  Q
     ||||    
T  30273804 atcac 30273808  T

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Target: chr8 (Bit Score: 103; Significance: 4e-51; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 162 - 312
Target Start/End: Complemental strand, 23680456 - 23680306
Alignment:
Q  162 gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgg 261  Q
    |||||||||| | ||||||| ||||||||| || |||||| ||||||||||||| |||||||||||||||||||||| ||||| ||||||||| ||||||    
T  23680456 gtggaggagggggttgtgggtttgggaggaggaggagttagaggagtgtagggctttattgactgatgtttctttgctagattctgtttcagacaggtgg 23680357  T
Q  262 gtgtggttgccagaccctgttgagggttacacagttcgcggttcatctcac 312  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  23680356 gtgtggttgccagaccctgttgagggttacactgttcgcggttcatatcac 23680306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 162 - 307
Target Start/End: Complemental strand, 17659125 - 17658980
Alignment:
Q  162 gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgg 261  Q
    |||||||||||| ||||||||||||||||| || |||||| ||||||||||||  |||||||||||||||||| ||| |||||||||||| || ||||||    
T  17659125 gtggaggaggaggttgtgggcttgggaggaggaggagttagaggagtgtagggttttattgactgatgtttctctgctagattttgtttctgacaggtgg 17659026  T
Q  262 gtgtggttgccagaccctgttgagggttacacagttcgcggttcat 307  Q
    ||||||||||  |||||| ||||||||||||| ||| | |||||||    
T  17659025 gtgtggttgcttgaccctattgagggttacactgtttgtggttcat 17658980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 162 - 305
Target Start/End: Original strand, 45255675 - 45255817
Alignment:
Q  162 gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgg 261  Q
    |||||||||||| || |||||||||||||| || |||||| |||||| |||||  || ||| ||||||||||||||||||||||||||||||| ||||||    
T  45255675 gtggaggaggaggttatgggcttgggaggaggaggagttagaggagt-tagggttttgttggctgatgtttctttgcaagattttgtttcagacaggtgg 45255773  T
Q  262 gtgtggttgccagaccctgttgagggttacacagttcgcggttc 305  Q
    |||||||||||||||||| ||||||| || || |||||||||||    
T  45255774 gtgtggttgccagaccctattgagggctatactgttcgcggttc 45255817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 162 - 302
Target Start/End: Complemental strand, 36157451 - 36157311
Alignment:
Q  162 gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgg 261  Q
    |||||||||||| |||||||| ||||||||||| |||||| ||||||||||| | ||| ||  ||||||||||||| | | |  | ||||||| | ||||    
T  36157451 gtggaggaggagtttgtgggcgtgggaggaagaggagttagaggagtgtaggactttactgcttgatgtttctttgtatgctaatatttcagacaagtgg 36157352  T
Q  262 gtgtggttgccagaccctgttgagggttacacagttcgcgg 302  Q
    || ||||| || ||||||  ||| || ||| ||||||||||    
T  36157351 gtttggttaccggacccttctgaagggtactcagttcgcgg 36157311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 100; Significance: 2e-49; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 162 - 305
Target Start/End: Original strand, 20208565 - 20208708
Alignment:
Q  162 gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgg 261  Q
    |||||||||||| |||||||| |||||||| || |||||| ||||||||||||| |||||||||||||||||| |||||| || ||||||||| ||||||    
T  20208565 gtggaggaggaggttgtgggcatgggaggaggaggagttagaggagtgtagggctttattgactgatgtttctctgcaagtttatgtttcagacaggtgg 20208664  T
Q  262 gtgtggttgccagaccctgttgagggttacacagttcgcggttc 305  Q
    |||||||||||||||||||||||||||||||| |||||||||||    
T  20208665 gtgtggttgccagaccctgttgagggttacactgttcgcggttc 20208708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 162 - 313
Target Start/End: Complemental strand, 6049517 - 6049366
Alignment:
Q  162 gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgg 261  Q
    |||||||||||| || | |||||||||| | || |||||||||||||||||||| |||||||||||||||||||||||||||||| |||| || ||||||    
T  6049517 gtggaggaggaggttataggcttgggagaaggaggagttaaaggagtgtagggctttattgactgatgtttctttgcaagattttttttccgacaggtgg 6049418  T
Q  262 gtgtggttgccagaccctgttgagggttacacagttcgcggttcatctcact 313  Q
    ||||||||||||||||||||| ||||||| || ||||||||||||| |||||    
T  6049417 gtgtggttgccagaccctgttaagggttatactgttcgcggttcatatcact 6049366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 162 - 307
Target Start/End: Original strand, 4415546 - 4415691
Alignment:
Q  162 gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgg 261  Q
    |||||||||||| |||||||| |||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  4415546 gtggaggaggaggttgtgggcctgggaggaggaggagttagaggagtgtagggccttattgactgatgtttctttgcaagattttgtttccgacaggtgg 4415645  T
Q  262 gtgtggttgccagaccctgttgagggttacacagttcgcggttcat 307  Q
    |||||||||||||||||| | | ||||||| | ||||| |||||||    
T  4415646 gtgtggttgccagaccctttggtgggttactctgttcgtggttcat 4415691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 162 - 307
Target Start/End: Original strand, 7000611 - 7000756
Alignment:
Q  162 gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgg 261  Q
    ||||| |||||| |||||| |||||||| | || |||||| ||||||||||||| ||||||| |||||||||| ||| ||||| ||||||||| | ||||    
T  7000611 gtggaagaggaggttgtggtcttgggagaaggaggagttagaggagtgtagggctttattgattgatgtttctctgctagattctgtttcagacaagtgg 7000710  T
Q  262 gtgtggttgccagaccctgttgagggttacacagttcgcggttcat 307  Q
    |||||||||||||||||   |||||||||||| |||||||||||||    
T  7000711 gtgtggttgccagaccccactgagggttacactgttcgcggttcat 7000756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 100; Significance: 2e-49; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 162 - 313
Target Start/End: Complemental strand, 47537562 - 47537411
Alignment:
Q  162 gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgg 261  Q
    |||||||||||| ||||||||||||||||| || |||||| ||||||||||||| |||||||||||||||| | ||| ||||||||||| ||| ||||||    
T  47537562 gtggaggaggaggttgtgggcttgggaggaggaggagttagaggagtgtagggctttattgactgatgtttttctgctagattttgttttagacaggtgg 47537463  T
Q  262 gtgtggttgccagaccctgttgagggttacacagttcgcggttcatctcact 313  Q
    |||||||||||||||||||||||||||||||| ||||| ||||||| |||||    
T  47537462 gtgtggttgccagaccctgttgagggttacactgttcgtggttcatatcact 47537411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 162 - 305
Target Start/End: Complemental strand, 26846161 - 26846018
Alignment:
Q  162 gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgg 261  Q
    |||| ||||||| |||||||| |||||||| || |||||| ||||||||||||| |||||||||||||||||| |||||| || ||||||||| ||||||    
T  26846161 gtgggggaggaggttgtgggcatgggaggaggaggagttagaggagtgtagggctttattgactgatgtttctctgcaagtttctgtttcagacaggtgg 26846062  T
Q  262 gtgtggttgccagaccctgttgagggttacacagttcgcggttc 305  Q
    ||||||||||| |||||||||||||||||||| |||||||||||    
T  26846061 gtgtggttgcctgaccctgttgagggttacactgttcgcggttc 26846018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 162 - 312
Target Start/End: Complemental strand, 48192093 - 48191943
Alignment:
Q  162 gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgg 261  Q
    |||||||||||| |||||||| |||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  48192093 gtggaggaggaggttgtgggcctgggaggaggaggagttagaggagtgtagggccttattgactgatgtttctttgcaagattttgtttccgacaggtgg 48191994  T
Q  262 gtgtggttgccagaccctgttgagggttacacagttcgcggttcatctcac 312  Q
    |||||||| ||||||||| | | ||||||| | ||||| ||||||| ||||    
T  48191993 gtgtggtttccagaccctttggtgggttactctgttcgtggttcatatcac 48191943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 165 - 305
Target Start/End: Complemental strand, 50544515 - 50544375
Alignment:
Q  165 gaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgggtg 264  Q
    ||||||||| |||||||||||||||||||| |||||| ||||||||| | | |||||||||||||||||| ||||||| ||||||||||| || ||||||    
T  50544515 gaggaggaggttgtgggcttgggaggaagaggagttagaggagtgtatgactttattgactgatgtttctctgcaagaatttgtttcagacagatgggtg 50544416  T
Q  265 tggttgccagaccctgttgagggttacacagttcgcggttc 305  Q
    ||| |||||||||||| |||||||||| |||||||||||||    
T  50544415 tggctgccagaccctggtgagggttactcagttcgcggttc 50544375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 234 - 312
Target Start/End: Original strand, 33121235 - 33121313
Alignment:
Q  234 tttgcaagattttgtttcagataggtgggtgtggttgccagaccctgttgagggttacacagttcgcggttcatctcac 312  Q
    |||||||||||||||||| || |||||||||||||||||||||||| | | ||||||| | ||||| ||||||| ||||    
T  33121235 tttgcaagattttgtttccgacaggtgggtgtggttgccagaccctttggtgggttactctgttcgtggttcatatcac 33121313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 162 - 272
Target Start/End: Original strand, 43121512 - 43121622
Alignment:
Q  162 gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgg 261  Q
    ||||||| || |||||||||| |||||||| || ||||||||||| |||||| | ||||||  |||||||||| |||| | |  ||||||||| | ||||    
T  43121512 gtggaggcggggattgtgggcgtgggaggaggaggagttaaaggaatgtaggactttattgcttgatgtttctctgcatgctaatgtttcagacaagtgg 43121611  T
Q  262 gtgtggttgcc 272  Q
    || ||||||||    
T  43121612 gtttggttgcc 43121622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 170 - 270
Target Start/End: Complemental strand, 23818863 - 23818763
Alignment:
Q  170 ggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgggtgtggtt 269  Q
    ||||||||||||| |||||||| || |||||| |||| |||| | | ||||||  ||||||||||||||| | |  ||||||||| |||||||| |||||    
T  23818863 ggagattgtgggcgtgggaggaggaggagttagaggaatgtatgactttattgcttgatgtttctttgcatgttaatgtttcagacaggtgggtttggtt 23818764  T
Q  270 g 270  Q
    |    
T  23818763 g 23818763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 250 - 289
Target Start/End: Original strand, 19222260 - 19222299
Alignment:
Q  250 tcagataggtgggtgtggttgccagaccctgttgagggtt 289  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  19222260 tcagacaggtgggtgtggttgccagaccctgttgagggtt 19222299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 239
Target Start/End: Original strand, 27924921 - 27924989
Alignment:
Q  171 gagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgca 239  Q
    ||||||||||||||||||||| || | |||| ||||||||| | | ||||||  |||||||||||||||    
T  27924921 gagattgtgggcttgggaggaggaggtgttagaggagtgtaagactttattgcttgatgtttctttgca 27924989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 99; Significance: 9e-49; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 162 - 312
Target Start/End: Original strand, 17079037 - 17079187
Alignment:
Q  162 gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgg 261  Q
    |||||||||||| ||||||||||||||||| || |||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||| | ||||    
T  17079037 gtggaggaggaggttgtgggcttgggaggaggaggagttagaggagcgtagggctttattgactgatgtttctttgcaagattttgtttcagacaagtgg 17079136  T
Q  262 gtgtggttgccagaccctgttgagggttacacagttcgcggttcatctcac 312  Q
    |||||||||||||||| |||||||||||| || ||||| ||||||| ||||    
T  17079137 gtgtggttgccagaccttgttgagggttatactgttcgtggttcatatcac 17079187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 162 - 305
Target Start/End: Original strand, 17873664 - 17873807
Alignment:
Q  162 gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgg 261  Q
    |||||||||||| |||||||| |||||||| || || ||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||    
T  17873664 gtggaggaggaggttgtgggcatgggaggaggaggaattagaggagtgtagggctttattgactgatgtttctctgcaagattttgtttcagacaggtgg 17873763  T
Q  262 gtgtggttgccagaccctgttgagggttacacagttcgcggttc 305  Q
    |||||||||||||| ||| || |||||||||| |||||||||||    
T  17873764 gtgtggttgccagatcctattcagggttacactgttcgcggttc 17873807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 162 - 305
Target Start/End: Original strand, 18051295 - 18051438
Alignment:
Q  162 gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgg 261  Q
    |||||||||||| ||||||||||||||||| || |||||| ||||||||||||| ||||||||| |||||| ||||||||||||| ||||||| ||||||    
T  18051295 gtggaggaggaggttgtgggcttgggaggaggaggagttagaggagtgtagggctttattgactaatgtttatttgcaagattttatttcagacaggtgg 18051394  T
Q  262 gtgtggttgccagaccctgttgagggttacacagttcgcggttc 305  Q
    ||||||||| | |||||||||||||||||||| ||||| |||||    
T  18051395 gtgtggttgtctgaccctgttgagggttacactgttcgtggttc 18051438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 162 - 307
Target Start/End: Original strand, 9199098 - 9199243
Alignment:
Q  162 gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgg 261  Q
    |||||||||||| ||||||||||||||||| ||  ||||| ||||||||||||| |||||||||||||||||||||| ||||| ||||||||| ||||||    
T  9199098 gtggaggaggaggttgtgggcttgggaggaggagaagttagaggagtgtagggcattattgactgatgtttctttgcgagattctgtttcagacaggtgg 9199197  T
Q  262 gtgtggttgccagaccctgttgagggttacacagttcgcggttcat 307  Q
    || ||||||||||||| | ||| ||||||| | |||||||||||||    
T  9199198 gtttggttgccagaccatattgtgggttactctgttcgcggttcat 9199243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 162 - 305
Target Start/End: Original strand, 11060708 - 11060848
Alignment:
Q  162 gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgg 261  Q
    |||||||||||| ||||||||||||||||| ||   |||| ||||||||||||  |||||||||||| ||||| ||| ||||| |||||| || ||||||    
T  11060708 gtggaggaggaggttgtgggcttgggaggagga---gttagaggagtgtagggatttattgactgatatttctctgctagattatgtttctgacaggtgg 11060804  T
Q  262 gtgtggttgccagaccctgttgagggttacacagttcgcggttc 305  Q
    ||||||||||| |||||| ||||||||||||| |||||||||||    
T  11060805 gtgtggttgcctgacccttttgagggttacactgttcgcggttc 11060848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 162 - 250
Target Start/End: Original strand, 649912 - 650000
Alignment:
Q  162 gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgttt 250  Q
    |||||||||||| ||||||||||||||||| || |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  649912 gtggaggaggaggttgtgggcttgggaggaggaggagttagaggagtgtagggctttattgactgatgtttctttgcaagattttgttt 650000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 99; Significance: 9e-49; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 162 - 312
Target Start/End: Complemental strand, 17708273 - 17708123
Alignment:
Q  162 gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgg 261  Q
    |||||||||||| ||||||||||||||||| || |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||    
T  17708273 gtggaggaggaggttgtgggcttgggaggaggaggagttagaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagacagatgg 17708174  T
Q  262 gtgtggttgccagaccctgttgagggttacacagttcgcggttcatctcac 312  Q
    |||||||||||| ||||| ||| ||||||| | ||||| ||||||| ||||    
T  17708173 gtgtggttgccaaacccttttgtgggttactctgttcgtggttcatatcac 17708123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 162 - 307
Target Start/End: Original strand, 10711007 - 10711152
Alignment:
Q  162 gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgg 261  Q
    |||||||||||| |||||||||||||| || || |||||| ||||||||||| | ||||| |||||||||||||| ||||||||||||||||| ||||||    
T  10711007 gtggaggaggaggttgtgggcttgggaagaggaggagttagaggagtgtaggactttattaactgatgtttctttccaagattttgtttcagacaggtgg 10711106  T
Q  262 gtgtggttgccagaccctgttgagggttacacagttcgcggttcat 307  Q
    |||||||||||||||||||||||||||||||| ||||| |||||||    
T  10711107 gtgtggttgccagaccctgttgagggttacactgttcgtggttcat 10711152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 162 - 313
Target Start/End: Original strand, 47106527 - 47106677
Alignment:
Q  162 gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgg 261  Q
    |||||||||||| || |||||||||||||| || |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||    
T  47106527 gtggaggaggaggttatgggcttgggaggaggaggagttagaggagtgtagggctttattgactgatgtttctttgcaagattttgtttccgacaggtgg 47106626  T
Q  262 gtgtggttgccagaccctgttgagggttacacagttcgcggttcatctcact 313  Q
    |||||||||||||||||||||||||| |  || ||||||||||||| |||||    
T  47106627 gtgtggttgccagaccctgttgaggggt-tactgttcgcggttcatatcact 47106677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 162 - 312
Target Start/End: Original strand, 30110771 - 30110921
Alignment:
Q  162 gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgg 261  Q
    |||||||||||| ||||||||||||||||| || |||||| ||||||||||||| |  ||||||||||||||| | ||||||||||||||||||||||||    
T  30110771 gtggaggaggaggttgtgggcttgggaggaggaggagttagaggagtgtagggcttctttgactgatgtttctctacaagattttgtttcagataggtgg 30110870  T
Q  262 gtgtggttgccagaccctgttgagggttacacagttcgcggttcatctcac 312  Q
    |||||||| ||||||||| ||||||| ||||||||||| ||||||| ||||    
T  30110871 gtgtggttaccagacccttttgaggggtacacagttcggggttcatatcac 30110921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 196 - 305
Target Start/End: Complemental strand, 26720921 - 26720812
Alignment:
Q  196 gagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgggtgtggttgccagaccctgttgagggttacacag 295  Q
    |||||| ||||||||||||| |||||||||||||||||| |||||| |||||||||||| ||||||||||||| | |||||||||||||||||||||| |    
T  26720921 gagttagaggagtgtagggctttattgactgatgtttctctgcaagtttttgtttcagacaggtgggtgtggtcgtcagaccctgttgagggttacactg 26720822  T
Q  296 ttcgcggttc 305  Q
    ||||||||||    
T  26720821 ttcgcggttc 26720812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 162 - 303
Target Start/End: Original strand, 21335216 - 21335357
Alignment:
Q  162 gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgg 261  Q
    ||||||| ||||||||||||||||||||||||| |||||| ||||||||| | | ||||||  ||||||||||||||| | |  ||||||||| ||||||    
T  21335216 gtggaggcggagattgtgggcttgggaggaagaggagttagaggagtgtaagactttattgcttgatgtttctttgcaggctaatgtttcagacaggtgg 21335315  T
Q  262 gtgtggttgccagaccctgttgagggttacacagttcgcggt 303  Q
    || |||||||  |||||| |||| || ||| |||||||||||    
T  21335316 gtatggttgcaggacccttttgaagggtactcagttcgcggt 21335357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 162 - 269
Target Start/End: Original strand, 28097809 - 28097916
Alignment:
Q  162 gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgg 261  Q
    ||||||||||||| ||||||  ||||||||||| |||| | |||||||||||   ||||||  |||||||| |||| | | |  ||||||||||||||||    
T  28097809 gtggaggaggagactgtgggggtgggaggaagaggagtaagaggagtgtaggaatttattgcttgatgtttatttgtatgctaatgtttcagataggtgg 28097908  T
Q  262 gtgtggtt 269  Q
    || |||||    
T  28097909 gtttggtt 28097916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 98; Significance: 4e-48; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 162 - 307
Target Start/End: Complemental strand, 1380376 - 1380231
Alignment:
Q  162 gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgg 261  Q
    |||||||||||| ||||||||||||||||| || |||||| ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  1380376 gtggaggaggaggttgtgggcttgggaggaggaggagttagaggagtgtaaggccttattgactgatgtttctttgcaagattatgtttcagataggtgg 1380277  T
Q  262 gtgtggttgccagaccctgttgagggttacacagttcgcggttcat 307  Q
    || ||||||||||| ||| ||| ||||||| | |||||||||||||    
T  1380276 gtttggttgccagatcctattgtgggttactctgttcgcggttcat 1380231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 162 - 312
Target Start/End: Original strand, 2999594 - 2999744
Alignment:
Q  162 gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgg 261  Q
    |||||||||||| |||||||| |||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  2999594 gtggaggaggaggttgtgggcctgggaggaggaggagttagaggagtgtagggccttattgactgatgtttctttgcaagattttgtttccgacaggtgg 2999693  T
Q  262 gtgtggttgccagaccctgttgagggttacacagttcgcggttcatctcac 312  Q
    |||||||||||||||||| | | ||||||| | ||||  ||||||| ||||    
T  2999694 gtgtggttgccagaccctttggtgggttactctgttcttggttcatatcac 2999744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 162 - 263
Target Start/End: Complemental strand, 11028164 - 11028063
Alignment:
Q  162 gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgg 261  Q
    ||||||||||||| | | ||  ||||||||||| |||||| ||||||||||| | ||||||  ||||||||||||| | | |  ||||||||| ||||||    
T  11028164 gtggaggaggagactatcggtgtgggaggaagaggagttagaggagtgtaggactttattgcgtgatgtttctttgtatgctaatgtttcagacaggtgg 11028065  T
Q  262 gt 263  Q
    ||    
T  11028064 gt 11028063  T

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Target: scaffold0179 (Bit Score: 96; Significance: 6e-47; HSPs: 2)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 162 - 305
Target Start/End: Complemental strand, 7822 - 7679
Alignment:
Q  162 gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgg 261  Q
    |||||||||||| |||||||| |||||||| || |||||| ||||||||||||| |||||||||||||||||| |||||| || ||||||||| ||||||    
T  7822 gtggaggaggaggttgtgggcatgggaggaggaggagttagaggagtgtagggctttattgactgatgtttctctgcaagtttctgtttcagacaggtgg 7723  T
Q  262 gtgtggttgccagaccctgttgagggttacacagttcgcggttc 305  Q
    ||||||||||| |||||||||||||||||||| |||||||||||    
T  7722 gtgtggttgcctgaccctgttgagggttacactgttcgcggttc 7679  T

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Target: scaffold0179; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 162 - 305
Target Start/End: Complemental strand, 12756 - 12613
Alignment:
Q  162 gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgg 261  Q
    |||| ||||||| |||||||| |||||||| || |||||| ||||||||||||| |||||||||||||||||| |||||| || ||||||||| ||||||    
T  12756 gtggtggaggaggttgtgggcatgggaggaggaggagttagaggagtgtagggctttattgactgatgtttctctgcaagtttctgtttcagacaggtgg 12657  T
Q  262 gtgtggttgccagaccctgttgagggttacacagttcgcggttc 305  Q
    ||||||||||| |||||||||||||||||||| |||||||||||    
T  12656 gtgtggttgcctgaccctgttgagggttacactgttcgcggttc 12613  T

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Target: chr7 (Bit Score: 92; Significance: 1e-44; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 162 - 305
Target Start/End: Complemental strand, 4077569 - 4077426
Alignment:
Q  162 gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgg 261  Q
    |||||||||||| |||||||||||||||||||| |||||| ||||||||||||| ||||||  |||||| ||||||||||||||||| ||||| ||||||    
T  4077569 gtggaggaggaggttgtgggcttgggaggaagaggagttagaggagtgtagggctttattgtttgatgtgtctttgcaagattttgtgtcagacaggtgg 4077470  T
Q  262 gtgtggttgccagaccctgttgagggttacacagttcgcggttc 305  Q
    |||||||||| |||||||| |||||| || ||||||||||||||    
T  4077469 gtgtggttgctagaccctgctgagggctatacagttcgcggttc 4077426  T

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Target: chr7; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 162 - 312
Target Start/End: Complemental strand, 34231993 - 34231843
Alignment:
Q  162 gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgg 261  Q
    |||||| ||||| |||||||| |||||||| || |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| || ||||||    
T  34231993 gtggagtaggaggttgtgggcctgggaggaggaggagttagaggagtgtagggccttattgaatgatgtttctttgcaagattttgtttccgacaggtgg 34231894  T
Q  262 gtgtggttgccagaccctgttgagggttacacagttcgcggttcatctcac 312  Q
    |||||||||||||||||| | |  |||||| | ||||| ||||||| ||||    
T  34231893 gtgtggttgccagaccctttggtaggttactctgttcgtggttcatatcac 34231843  T

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Target: chr7; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 162 - 305
Target Start/End: Original strand, 7458517 - 7458660
Alignment:
Q  162 gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagattttgtttcagataggtgg 261  Q
    |||||||||||| |||||||| |||||||| || || ||| ||||||||||||| ||||| ||| |||||||| ||||||||| |||||| || ||||||    
T  7458517 gtggaggaggaggttgtgggcatgggaggaggaggaattagaggagtgtagggctttattaactaatgtttctctgcaagattctgtttccgacaggtgg 7458616  T
Q  262 gtgtggttgccagaccctgttgagggttacacagttcgcggttc 305  Q
    |||||||||||||| ||| || |||||||||| |||||||||||    
T  7458617 gtgtggttgccagatcctattcagggttacactgttcgcggttc 7458660  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 176 - 215
Target Start/End: Original strand, 36228010 - 36228049
Alignment:
Q  176 tgtgggcttgggaggaagatgagttaaaggagtgtagggc 215  Q
    ||||||| ||||||||||||| ||||||||||||||||||    
T  36228010 tgtgggcgtgggaggaagatgtgttaaaggagtgtagggc 36228049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0912 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0912
Description:

Target: scaffold0912; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 162 - 243
Target Start/End: Original strand, 2719 - 2799
Alignment:
Q  162 gtggaggaggagattgtgggcttgggaggaagatgagttaaaggagtgtagggccttattgactgatgtttctttgcaagat 243  Q
    |||||||||||| |||||||||||| |||| || |||||| |||||| |||||| |||||||||||||||||||||||||||    
T  2719 gtggaggaggaggttgtgggcttgg-aggaggaggagttagaggagtatagggctttattgactgatgtttctttgcaagat 2799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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