View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0740_high_44 (Length: 386)
Name: NF0740_high_44
Description: NF0740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0740_high_44 |
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Alignment Details
Target: chr5 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 29 - 381
Target Start/End: Complemental strand, 812710 - 812361
Alignment:
| Q |
29 |
aagtagcagccctttagttgcaacggaagagcttgcttggatgcacaaaccagctaagataataatattccactagcaagagtgctcaggatatataggg |
128 |
Q |
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| T |
812710 |
aagtagcagccctttagttgcaacggaagagcttgtttggatgcacaaaccagctaagataataatattccactagcaagagtgctcaggatatatatat |
812611 |
T |
|
| Q |
129 |
ctatgtgtgatgtgatgtagagttccaaactactttacattgtaattaactttaatcgataatttgagattagactgttaagattacacatcagttttag |
228 |
Q |
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| T |
812610 |
agttctatg-tgtgatgtagagttccaaactactttacattgtaattaattttaatcgataatttgagattagactgttaagattacacatcaattttag |
812512 |
T |
|
| Q |
229 |
tgaagctgtatgatctcagccgttaaaccaaatcggacagttgagagtagtaaatgtgccacacaagttaatgcaccaactccaaattcattgcggattc |
328 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
812511 |
tgaagctgtatgatctcagccgttaaaccaaatcggacagttgagagaagtaaatgtgccacacaagttaatgcaccaactccaaattcattgtggattc |
812412 |
T |
|
| Q |
329 |
tcttagtttgtgatataaactaatatttcatttcattttatattcatctcact |
381 |
Q |
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||||||||||||| ||||| | |||||||||||||||||||||||| ||||| |
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| T |
812411 |
tcttagtttgtgaaataaa--actatttcatttcattttatattcatttcact |
812361 |
T |
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