View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0740_high_47 (Length: 377)
Name: NF0740_high_47
Description: NF0740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0740_high_47 |
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Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 29 - 328
Target Start/End: Complemental strand, 2524195 - 2523897
Alignment:
| Q |
29 |
atattataatatgaacaatttcactacaacatcaacaatataagtcaaacttttatttgatcgtaatatatttaataacattgaatacaacgatatacaa |
128 |
Q |
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| T |
2524195 |
atattataatatgaacaatttcactacaatatcaacaatataagtcaaacttttatttgatcgtactatatttaataacattgacaacaacgatatacaa |
2524096 |
T |
|
| Q |
129 |
tgataaaataaacatacatttgacatttcaactcatgagtttcaatgaaagagaatcattaacagaagaacatagaatctgcaactcgttcatgaagacg |
228 |
Q |
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| T |
2524095 |
tgataaaataaacatacatttgacatt-caactcatgagtttgaatgaaagagaatcattaacagaagaacatagaatctgcaactcgttcatgaagacg |
2523997 |
T |
|
| Q |
229 |
tggtaactcagtaggtatttgagatatgaattcattgtggctggaaagattctctgactcatcatattttataaattgtgctatctgagcaacagctagg |
328 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
2523996 |
tggtaactcagtaggtatttgagatatgaattcattgtggctggaaagattctctgactcatcatattttataaattgtgctatctgagcagcagctagg |
2523897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 89
Target Start/End: Complemental strand, 254846 - 254788
Alignment:
| Q |
31 |
attataatatgaacaatttcactacaacatcaacaatataagtcaaacttttatttgat |
89 |
Q |
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||||||||| |||||||| |||| |||||| |||||||||||| ||| |||||||||| |
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| T |
254846 |
attataataggaacaattccactgcaacatgaacaatataagttaaatctttatttgat |
254788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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