View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0740_high_49 (Length: 370)
Name: NF0740_high_49
Description: NF0740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0740_high_49 |
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Alignment Details
Target: chr1 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 30 - 365
Target Start/End: Original strand, 48630101 - 48630436
Alignment:
| Q |
30 |
attttttgaaacggtcaatgttcatatgttatgttaatggttaatttgttagtttttgatgaaagtgggaagcggacctgaaatcacccttatcaatcca |
129 |
Q |
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| T |
48630101 |
attttttgaaacggtcaatgttcgtatgttatgttaatggttaatttgttagtttttgatgaaggtgggaagcggacctgaaatcacccttatcaatcca |
48630200 |
T |
|
| Q |
130 |
catgttacctctttcaccacagccaccaaaccaatcatatcatataattgcaaacacaaattgttcactaggtaattaggatttttgctttacatcaata |
229 |
Q |
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| T |
48630201 |
catgttacctctttcaccacagccaccaaaccaatcatatcatataattgtaaacacaaattgttcactaggtaattaggatttttgctttacatcaata |
48630300 |
T |
|
| Q |
230 |
ttacttttataactatgaaacaaagttacgataaaataacagaaatgcctcaataattaatgatatatgctaacagtatggtaatggcaaagaaaatagt |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48630301 |
ttacttttataactatgaaacaaagttacgataaaataacagaaatgcctcaataattaatgatatatgctaacagtatggtaatggcaaagaaaatagt |
48630400 |
T |
|
| Q |
330 |
atataaaggtacagaagtaataaccttcatatcagt |
365 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
48630401 |
atataaaggtacagaagtaataaccttcatatcagt |
48630436 |
T |
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