View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0740_high_5 (Length: 617)
Name: NF0740_high_5
Description: NF0740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0740_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 370; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 8 - 414
Target Start/End: Original strand, 14581833 - 14582243
Alignment:
| Q |
8 |
ccaacaatatgttcaaattttgtggataaaaaatgctagtgaaagagaagatcctactaaagattgttagcgaaatttcttaccaaaaattaattatcaa |
107 |
Q |
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| T |
14581833 |
ccaacattatgttcaaattttgtggataaaaaatgctagtaaaagagaagatcctactaaagattgttagcgaaatttcttatcaaaaattaattatcaa |
14581932 |
T |
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| Q |
108 |
caaagtcgataaatgctcacatgtaactttattctcatgtaaacggttcgaagaaaaataaaagggtaacaaatccaa----ctaggttaggtatatctt |
203 |
Q |
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| T |
14581933 |
caaagtcgataaatgctcgcatgtaactttattctcatgtaaacggttcgaagataaataaaagggtaacaaatccaaccaactaggttaggtatatctt |
14582032 |
T |
|
| Q |
204 |
ggctatgatgagattgatatcaaaaaaggttaggccattaggttgagattaagattgaattaatcaaacaaacatctttatccattataattattttaat |
303 |
Q |
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| T |
14582033 |
ggctatgatgagattgatatcaaaaaaggttaggccattaggttgagattaagattgaattaatcaaacaaacatctttatccattataattattttaat |
14582132 |
T |
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| Q |
304 |
ggacacacagtaatactattttcttttatgtgagtgcttatacattgcaacttttgatggtgttaaatagtcattttagataatgaaaaagaatgataca |
403 |
Q |
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| T |
14582133 |
ggacacacagtagtactattttcttttatgtgagtgcttatacattgcaacttttgatggtgttaaatagtcattttagataatgaaaaagaatgataca |
14582232 |
T |
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| Q |
404 |
cacaccacttt |
414 |
Q |
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| T |
14582233 |
cacaccacttt |
14582243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 407 - 462
Target Start/End: Complemental strand, 12522533 - 12522478
Alignment:
| Q |
407 |
accactttgtcccactaaggcaacacttttgcctgaaggaactcttagactaaaat |
462 |
Q |
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| T |
12522533 |
accactttgtcccactaaggcaacacttttgcctgaaggaactcttagactaaaat |
12522478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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