View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0740_high_52 (Length: 360)
Name: NF0740_high_52
Description: NF0740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0740_high_52 |
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Alignment Details
Target: chr7 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 334
Target Start/End: Original strand, 42861705 - 42862039
Alignment:
| Q |
1 |
atctacctgctcctctagtgccctgtctcaaaactcgaatgcccaaaaaatttcagaaattatgcaataactgaaacctttggtgagcaaggatcttgac |
100 |
Q |
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| T |
42861705 |
atctacctgctcctctagtgccctgtctcaaaactcgaatgcccaaaaaatttcagaaattatgcaaaaactgaaacctttggtgagcaaggatcttgac |
42861804 |
T |
|
| Q |
101 |
tcaatcatgtccatcactggagttgtcgaagaaatatcttcgttggtgaaagatttaaatgaaatcaaagatcacctcagttttgctgattttgggacgt |
200 |
Q |
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| T |
42861805 |
tcaatcatgtccaccactggagttgtcgaagaaatatcttcgttggtgaaagatttaaatgaaatcaaagatcacctcagttttgccgattttgggacgt |
42861904 |
T |
|
| Q |
201 |
tttctgcagttcagatggctattggtcg-tttgagaacatcaaacttgctctatccaattatcatggtgtgcatcaagaacaacaggaagtttgtgggtg |
299 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42861905 |
tttctgcagttcagatggctattggtcgttttgagaacatcaaacttgctctatccaattatcatggtgtgcatcaagaacaacaggaagtttgtgggtg |
42862004 |
T |
|
| Q |
300 |
tattcaagaattgatacagcatcgaacaaatgtga |
334 |
Q |
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| T |
42862005 |
tattcaagaattgatacagcatcgaacaaatgtga |
42862039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 11 - 334
Target Start/End: Original strand, 27574488 - 27574824
Alignment:
| Q |
11 |
tcctctagtgccctgtctcaaaactcgaatgcccaaaaaatttcagaaattatgcaataactgaaacctttggtgagcaaggatcttgactcaatcatgt |
110 |
Q |
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| T |
27574488 |
tcctctagtgctctttctcaaaacccgaatgtccaaaatatttcagaagttatgcaaaaattgaaagtcttggtgggcaaggatcttgactcaatcatgt |
27574587 |
T |
|
| Q |
111 |
ccatcactggagttgtcgaagaaatatcttcgttggtgaaagatttaaatgaaatcaaagatcacctcagttttgctgattttgggacgttttctgcagt |
210 |
Q |
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||| |||||| ||||| | || |||||||| ||| ||||| ||||| ||||||||||||| || ||||| || ||||||||| || ||||||| ||| |
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| T |
27574588 |
ccaccactggtgttgttggggagatatcttcattgttgaaaaatttagatgaaatcaaagaccatctcagccctgttgattttggaaccttttctgtagt |
27574687 |
T |
|
| Q |
211 |
tcagatggctattggtcg-tttga------------gaacatcaaacttgctctatccaattatcatggtgtgcatcaagaacaacaggaagtttgtggg |
297 |
Q |
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|||||||| | ||||||| ||||| |||||||||||||| ||||||| ||||||| |||||||||||||||||| | |||| |||| |
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| T |
27574688 |
tcagatggttgttggtcgttttgaaagtgacttcccaaacatcaaacttgccctatccacctatcatgatgtgcatcaagaacaacaaggagttcttggg |
27574787 |
T |
|
| Q |
298 |
tgtattcaagaattgatacagcatcgaacaaatgtga |
334 |
Q |
| |
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||| ||||||| |||||||| | ||||||| |||||| |
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| T |
27574788 |
tgtcttcaagagttgatacaacgtcgaacagatgtga |
27574824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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