View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0740_high_53 (Length: 357)
Name: NF0740_high_53
Description: NF0740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0740_high_53 |
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Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 5 - 289
Target Start/End: Original strand, 42861444 - 42861728
Alignment:
| Q |
5 |
tctccaaaaatataacttgattaaagcttataactctttcctccttcnnnnnnnnnnnnnnnncagaaagcttataactatttcccttctttactaggaa |
104 |
Q |
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| T |
42861444 |
tctccaaaagtataacttgattaaagcttataactctttcctccttcaaaaaaaaaaaaaaaacagaaagcttataactatttcccttctttactaggaa |
42861543 |
T |
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| Q |
105 |
ctgacaattcattgtgtcnnnnnnnngcaggtgttacaattatctactgaaactcccaaggattctgatatggacactgttagtgggagcatttattcga |
204 |
Q |
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| T |
42861544 |
ctgacaattcattgtgtcttttttttgcaggtgttacaattatctactgaaactcccaaggattctgatatggacactgttagtgggagcatttattcga |
42861643 |
T |
|
| Q |
205 |
ctgatcaactagaagagtttgtgtcaaaactcgctgcccacagtcacttgaattcgttggtatctacctgctcctctagtgccct |
289 |
Q |
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| T |
42861644 |
ctgatcaactagaagagtttgtgtcaaaactcgctgcccacagtcacttgaattcgttggtatctacctgctcctctagtgccct |
42861728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 77 - 118
Target Start/End: Original strand, 42857176 - 42857217
Alignment:
| Q |
77 |
tataactatttcccttctttactaggaactgacaattcattg |
118 |
Q |
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| T |
42857176 |
tataactatttcccttctttactaggaattgtcaattcattg |
42857217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 118
Target Start/End: Original strand, 42855597 - 42855641
Alignment:
| Q |
74 |
gcttataactatttcccttctttactaggaactgacaattcattg |
118 |
Q |
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| T |
42855597 |
gcttataactctttcccttctttactaggaattgtcaattcattg |
42855641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 118
Target Start/End: Original strand, 42848954 - 42848998
Alignment:
| Q |
74 |
gcttataactatttcccttctttactaggaactgacaattcattg |
118 |
Q |
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| T |
42848954 |
gcttataattctttcccttctttactaggaattgtcaattcattg |
42848998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 292 - 340
Target Start/End: Original strand, 48767473 - 48767521
Alignment:
| Q |
292 |
ctgttgccggcaaattggttggagctactatgagaagaagtgccatggt |
340 |
Q |
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| T |
48767473 |
ctgtggccggcaaattggttggagctactatgagaagaagtgccttggt |
48767521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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